BS12469.complete Sequence
1016 bp assembled on 2007-10-17
GenBank Submission: FJ637195
> BS12469.complete
GAAGTTATCAGTCGACATGGCAAGCATAGTACTTATAGCTTGCTTGGCTA
TATTGGGATTAATTATTACAATCGCTCTTTTTCTGGCTGGAGGATACTTG
TGGTGGAGGCATAAAAGATCACAGTTACAGTTTATTGAACCAAATGAAGA
TGAGGAATCTAGTAGTTATAGTCTTCGGGCTGCTCAGGATATTGTTGACT
CTGGTAATCCACCTACAAAACCGCAAGTGCCGGTGGCACATGCTATCACG
ACTCCTCTCCAAAATAATATTAACAGGAAATTAAATGGATTTTTAAGTCT
TAGAACTCCTTTGATTGGCGGGTCGGGGGCCTCTCAAACAAAACCGCAAA
TCATTTCTTCAGTTGGAAATCCTGGAGATGGGACTACGAAAGATTCTGCA
AATAAAAGTATCTCAATGACAGACATGTATTTGGATAGCACCGATCCAAG
TGAAAATGTTGGGCAAATACATTTCTCCTTGGAGTATGATTTCCAAAACA
CAACATTAATTTTGAAAGTTCTTCAAGGAAAAGAGCTTCCAGCAAAAGAT
TTGAGTGGTACTTCCGATCCATATGTTCGTGTAACGCTGTTACCAGATAA
AAAGCATAGATTGGAAACCAAAATAAAACGGCGAACCCTTAATCCACGAT
GGAATGAAACATTTTATTTTGAAGGTTTTCCAATTCAAAAACTTCAATCA
CGTGTTTTACACTTACATGTTTTTGATTACGATCGGTTTTCAAGAGATGA
CTCCATAGGGGAAGTATTTCTTCCTTTATGTCAGGTTGACTTTGCTGGAA
AACAATCTTTTTGGAAGGCTTTAAAGCCCCCTGCAAAGGATAAATGCGGA
GAACTTCTCTCCTCCCTTTGCTATCACCCGTCGAACTCAATTTTGACTTT
AACACTAATTAAAGCGAGAAATTTGAAAGCCAAAGATATCAACGGAAAAT
CTGATCCATACGTAAAGGTGTGGCTACAGTTTGGCGATAAAAGGTTTTAA
AAGCTTTCTAGACCAT
BS12469.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt7-RB | 984 | CG2381-PB | 1..984 | 17..1000 | 4920 | 100 | Plus |
| Syt7-RM | 1251 | CG2381-PM | 1..978 | 17..994 | 4890 | 100 | Plus |
| Syt7-RA | 1251 | CG2381-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt7-RB | 2684 | CG2381-RB | 43..1028 | 15..1000 | 4930 | 100 | Plus |
| Syt7-RM | 2830 | CG2381-RM | 123..1103 | 14..994 | 4905 | 100 | Plus |
| Syt7-RA | 2794 | CG2381-RA | 88..1067 | 15..994 | 4900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 282434..282738 | 705..401 | 1525 | 100 | Minus |
| 4 | 1348131 | 4 | 281724..281894 | 953..783 | 855 | 100 | Minus |
| 4 | 1348131 | 4 | 305015..305179 | 178..14 | 825 | 100 | Minus |
| 4 | 1348131 | 4 | 302386..302527 | 318..177 | 710 | 100 | Minus |
| 4 | 1348131 | 4 | 281946..282028 | 786..704 | 415 | 100 | Minus |
| 4 | 1348131 | 4 | 302242..302324 | 400..318 | 415 | 100 | Minus |
| 4 | 1348131 | 4 | 280497..280538 | 994..953 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:25:47 has no hits.
BS12469.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:03 Download gff for
BS12469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RH | 1..984 | 17..1000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:34:37 Download gff for
BS12469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RH | 105..1086 | 17..998 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:52 Download gff for
BS12469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RB | 45..1026 | 17..998 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:07 Download gff for
BS12469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RH | 105..1086 | 17..998 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:02 Download gff for
BS12469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RB | 45..1026 | 17..998 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:02 Download gff for
BS12469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 280493..280537 | 954..998 | 93 | <- | Minus |
| 4 | 281724..281892 | 785..953 | 100 | <- | Minus |
| 4 | 281948..282028 | 704..784 | 100 | <- | Minus |
| 4 | 282436..282738 | 401..703 | 100 | <- | Minus |
| 4 | 302242..302323 | 319..400 | 100 | <- | Minus |
| 4 | 302386..302526 | 178..318 | 100 | <- | Minus |
| 4 | 305016..305176 | 17..177 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:52 Download gff for
BS12469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 323012..323152 | 178..318 | 100 | <- | Minus |
| arm_4 | 325642..325802 | 17..177 | 100 | | Minus |
| arm_4 | 301119..301163 | 954..998 | 93 | <- | Minus |
| arm_4 | 302350..302518 | 785..953 | 100 | <- | Minus |
| arm_4 | 302574..302654 | 704..784 | 100 | <- | Minus |
| arm_4 | 303062..303364 | 401..703 | 100 | <- | Minus |
| arm_4 | 322868..322949 | 319..400 | 100 | <- | Minus |
BS12469.pep Sequence
Translation from 16 to 999
> BS12469.pep
MASIVLIACLAILGLIITIALFLAGGYLWWRHKRSQLQFIEPNEDEESSS
YSLRAAQDIVDSGNPPTKPQVPVAHAITTPLQNNINRKLNGFLSLRTPLI
GGSGASQTKPQIISSVGNPGDGTTKDSANKSISMTDMYLDSTDPSENVGQ
IHFSLEYDFQNTTLILKVLQGKELPAKDLSGTSDPYVRVTLLPDKKHRLE
TKIKRRTLNPRWNETFYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEV
FLPLCQVDFAGKQSFWKALKPPAKDKCGELLSSLCYHPSNSILTLTLIKA
RNLKAKDINGKSDPYVKVWLQFGDKRF*
BS12469.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt7-PB | 327 | CG2381-PB | 1..327 | 1..327 | 1709 | 100 | Plus |
| Syt7-PM | 416 | CG2381-PM | 1..326 | 1..326 | 1703 | 100 | Plus |
| Syt7-PA | 416 | CG2381-PA | 1..326 | 1..326 | 1703 | 100 | Plus |
| Syt7-PI | 345 | CG2381-PI | 1..312 | 1..312 | 1622 | 100 | Plus |
| Syt7-PF | 283 | CG2381-PF | 1..193 | 134..326 | 1026 | 100 | Plus |
| Syt7-PM | 416 | CG2381-PM | 275..397 | 146..267 | 164 | 34.7 | Plus |
| Syt7-PA | 416 | CG2381-PA | 275..397 | 146..267 | 164 | 34.7 | Plus |
