BS12470.complete Sequence
1619 bp assembled on 2006-11-01
GenBank Submission: FJ637196
> BS12470.complete
GAAGTTATCAGTCGACATGATGGCCCATGCCCAGCGGGAGATCGAGGAAC
GCAAGCGGGCCCTGAGTAATCTAAGAGACAAGGATCCGCTGCTGGCGTCA
GTTCCATCGATCGGAATGCCAGTTGCCTTAGCCACTCAAGCGCTGGCGAA
GAAGCCCACGCCCGAGGACTCGGAGAAGGCCAGGAAGATTGCCGAGTTGC
AGGCACAGATCAGGGCCAAGCTTACTGGCAATTTGGCTAGTTTGATTCAG
CCCACTGCGGTAGCGGCCGCCGCTGCAGCTGCTGCTCAAGCGCAGGAGCG
ACCCAAACCCCTGATTCTGGACGATGAAGGACGCACTGTGGACAAGAGCG
GACGTACCATTAATATTCCCACGGTGACACCTACATTGAAAGCCAACATA
CGCGCCAAGAAACGGGAGGTGTTCCAACGCCAAACGGGTTTGGGTGAACG
GAGTGAATCGGGCACTTCGGCCCAGGAAGAAGCTATTAAGTACTTTGACG
ACCGCATAGCCCTGAAGCCCACTGTTAGAACCAAGAGGACGTTGAGATTC
CACGAGCCCGGAAAGTTCCAGCAGCTGGCCGAACGAATGCGCATGAAAAG
CCAGCTGGAGCGACTACAGAATGAGATTTCGCAAATAGCCCGGAAAACGG
GCATCTCGTCGGCCACCAAACTGGCATTGATTGCCCCCAAGCAGGACATG
CCGGACGATGTGCCTGCCATGGAGTGGTGGGACTCAGTTATACTGACCCA
GGATCTGGAGACGGTAGACGACGCAAGCGGTAAGATAAGCATACGCCAAA
CAGCCATAACCAACCTTATAGAGCATCCCACACAAATGAAGCCGCCAAAT
GAGCCCTTGAAACCAGTGTATCTGCCGGTTTTCCTCACAAAGAAAGAGCG
CAAAAAGCTTCGTCGCCAGAACCGTCGCGAGGCCTGGAAGGAGGAGCAGG
AGAAGATCCGACTGGGTTTGGTGGCCCCACCAGAGCCGAAACTGCGCATA
TCCAACCTGATGCGTGTGCTTGGCTCGGAGGCCGTACAAGATCCGACCAA
AATGGAGCAGCATGTGCGCGACCAGATGGCCAAGCGGCAGAAGGCGCACG
AAGATGCCAACAATGCGCGCAAGCTGACCAGCGAGCAGAAGAGCGAAAAG
AAGCAGCGCAAGCTGAGGGAAGACACCAGCTGCGGTGTACATGTCAGCGT
CTATCGCATACGAGATCTGCAGGACAACCAGAGCAAGAAATTCAAGGTGG
AGACCAATGCCAAGCAGCTGCAGATGACCGGCAGCGTGGTGTTGTTCCGG
GATTGCTGTGTGGTTGTCGTGGAGGGTGGGCCCAAGCAGCAGAAAAAGTA
TCGCAGGCTCATGCTAACGCGCATTAAGTGGGAGGAGGACAACGCCAAGG
GCAATGACGGCCAGGACGTGCCGAACTCATGCGTACTCGTCTGGGAGGGG
ACTAGTCAGCGACGGCACTTTGGCGAGATCAAGTTTAAGATCTTTCCAAT
GGAAAAAATGGCCCGTGAGTTTTTTCAGAAGCACCAGGTCGAACACTACT
GGGATCTGGCCTACTCCGGAGCCGTGCTTGAGGCCTCCACGGATCAGCAG
TAGAAGCTTTCTAGACCAT
BS12470.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp3-RB | 1587 | CG7757-PB | 1..1587 | 17..1603 | 7935 | 100 | Plus |
| Prp3-RA | 1797 | CG7757-PA | 211..1797 | 17..1603 | 7935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp3-RB | 2082 | CG7757-RB | 320..1907 | 17..1604 | 7940 | 100 | Plus |
| Prp3-RA | 2148 | CG7757-RA | 386..1973 | 17..1604 | 7940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19910688..19911519 | 17..848 | 4160 | 100 | Plus |
| 3L | 28110227 | 3L | 19911574..19912329 | 849..1604 | 3780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:03:44 has no hits.
BS12470.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:16 Download gff for
BS12470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7757-RB | 1..1587 | 17..1603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:53 Download gff for
BS12470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7757-RB | 275..1862 | 17..1604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:31 Download gff for
BS12470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp3-RA | 386..1972 | 17..1603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:16 Download gff for
BS12470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7757-RB | 275..1862 | 17..1604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:22 Download gff for
BS12470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp3-RA | 386..1972 | 17..1603 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:22 Download gff for
BS12470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19910688..19911519 | 17..848 | 100 | -> | Plus |
| 3L | 19911574..19912328 | 849..1603 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:31 Download gff for
BS12470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19903788..19904619 | 17..848 | 100 | -> | Plus |
| arm_3L | 19904674..19905428 | 849..1603 | 100 | | Plus |
BS12470.pep Sequence
Translation from 16 to 1602
> BS12470.pep
MMAHAQREIEERKRALSNLRDKDPLLASVPSIGMPVALATQALAKKPTPE
DSEKARKIAELQAQIRAKLTGNLASLIQPTAVAAAAAAAAQAQERPKPLI
LDDEGRTVDKSGRTINIPTVTPTLKANIRAKKREVFQRQTGLGERSESGT
SAQEEAIKYFDDRIALKPTVRTKRTLRFHEPGKFQQLAERMRMKSQLERL
QNEISQIARKTGISSATKLALIAPKQDMPDDVPAMEWWDSVILTQDLETV
DDASGKISIRQTAITNLIEHPTQMKPPNEPLKPVYLPVFLTKKERKKLRR
QNRREAWKEEQEKIRLGLVAPPEPKLRISNLMRVLGSEAVQDPTKMEQHV
RDQMAKRQKAHEDANNARKLTSEQKSEKKQRKLREDTSCGVHVSVYRIRD
LQDNQSKKFKVETNAKQLQMTGSVVLFRDCCVVVVEGGPKQQKKYRRLML
TRIKWEEDNAKGNDGQDVPNSCVLVWEGTSQRRHFGEIKFKIFPMEKMAR
EFFQKHQVEHYWDLAYSGAVLEASTDQQ*
BS12470.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp3-PB | 528 | CG7757-PB | 1..528 | 1..528 | 2686 | 100 | Plus |
| Prp3-PA | 598 | CG7757-PA | 71..598 | 1..528 | 2686 | 100 | Plus |
