BS12471.complete Sequence
1778 bp assembled on 2007-12-11
GenBank Submission: FJ637197
> BS12471.complete
GAAGTTATCAGTCGACATGTATGCCGCCTCGATCCTGATCCTGCACCTGA
CTTGGGCCGTGGCCACGATCGCGGCCAACGGTGCCGGCCATAATGGCCCG
GTGGCATCCGGAGCAGGGCCTAACGGATTGCAGTGCCAGCCCATCGCCGT
GTCCGCCTGCCAAGGCCTCGGCTACAACATGACCGCACTGCCCAACCTGG
CAGGTCACACCAATCAGCTGGAGGCTGAGCTCCAGATTGCCAAACTGGTG
CCACTAATAGAATCCGGCTGCTCGCGTCGCGCCCGCTTTTTGCTCTGCTC
GTCTCTGTTTCCGCTGTGCACGCCGGATGTGCCACGCCCCGTTGCCGCCT
GCAAATTGCTGTGCGAGACTGTTAGGGGCGAGTGTATGGAAAACGCTCCG
CCGGAACTGATGGAGCTGTGGCCTTCGTTCCTTAACTGCGACGGACTGCC
GCAGCCGGAGAAGCACGAGTTGTGCATGCAGATTCCACAGGAGGTGGCTG
TGCCAGGCGGGAGTCCAAGTGGTCCGCCCACCACTGGTTCACCTGGCGTC
GAAGATCACCCGCAGACGTACCGCTTTTGGAAAAGCGGAGCATCTCCCAC
CTCTGACTTGGCTGGCGTCTTGTGCCCGCAAAACTTTAGCGGCAGTCCCT
TTAATCCGGAGGAGTGCGTGCCCCAGTGTCAGCGGGACGCCTTCCACACG
AGCTCTCAGAAGAAGACGTCTGAGACCCTCATTCTAGGCCTCTCGGCCGT
CTGCTTCGTCCTGACACTGTTCGCCTTGGTGACCTTCTGGGCGGAGCCCA
CCAGGTTTGGCTACCCCGAGAGACCAGTGCTCTTCCTGTGCCTGTGCTAC
AACCTCTTCAGCGTGTGCTATCTGGAGCGAATCGTGTTCCACAATCAAGC
AAGGATGCATGACGTCGAGCTGCAATGGCGGCTGATGCGACCGGGTTGCT
TGCTGACGCCCCCTTGCCTGGCCTCCTACATAACCACCTCCTATTTAAGC
CTGTGTGCAGCCAGCTGGTGGCTGATATTTGCCCTGTGCTTCTACCTGTC
CTCCCACAAAAAGTGGTCCAGCGAGGCGCTGGAAAAGAGGTCCGGGCTGT
TCCACGTTCTGGCCTGGGTGCCACCGCTGGCGCCCCCCATTGCCGCCCTG
CTGCTGGAGAAGGTGCGTCCGAGTGAGCTGACTGGGATGTGCTACGCACC
GGGATTTGTGGAGCTGCCAGCACTGGTCCTGCTCCTGCTTGGGCTGTACT
TCACCCTGAGAGCCTCCAGGTCTCTGCTCTCCCTGCAGCAACAGTTGCAG
CCCACCCTGGCCCACCACCGATTCGGGCAGATCCGGAAGCGCTTTGTGCT
CTTCTCCCTGCTGTACTTCGCACCCACGACCGCCGGCGTCGTGGCGGCTC
TTTGCGAGCGGTACGCGGATTCAGTGCCCAGCTGCTCCACACCCGATGAC
TGCCTCTCACCCACTCCGCTCAGTGCCTGGCCAGCGTTGGTCCGGATCTT
CTTCCAGCTGGTGGGCGGAACGTTGACAGGGTTGTGGGTGTGGTCGCGCA
AAACCTGCGAGAGCTACAGAAATCGGCTGGGTGCCAGCGGCACACCCACC
TCATCCCTGATGAATCAAAGCAAGGCGGCCGGGGCTTTGCCCAAAAAGCA
TTTGTATACGAGTGGGAAATCCATGCTGCCCACGGGGGGAATCACTCCTC
TATATGCTGGTATTAGTTTTCACAATGTGCCCGTCTACAACCCCAACCAA
TCGAGAGTTTAGAAGCTTTCTAGACCAT
BS12471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz3-RC | 1746 | CG16785-PC | 1..1746 | 17..1762 | 8730 | 100 | Plus |
| fz3-RA | 1746 | CG16785-PA | 1..1746 | 17..1762 | 8730 | 100 | Plus |
| fz3-RB | 1941 | CG16785-PB | 411..1941 | 232..1762 | 7655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz3-RC | 3250 | CG16785-RC | 285..2030 | 17..1762 | 8730 | 100 | Plus |
| fz3-RA | 2249 | CG16785-RA | 204..1949 | 17..1762 | 8730 | 100 | Plus |
| fz3-RB | 2304 | CG16785-RB | 474..2004 | 232..1762 | 7655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 781473..783002 | 233..1762 | 7650 | 100 | Plus |
| X | 23542271 | X | 770229..770447 | 17..235 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:40:11 has no hits.
BS12471.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:04 Download gff for
BS12471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz3-RA | 1..1746 | 17..1762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:56 Download gff for
BS12471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz3-RA | 195..1947 | 9..1762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:30 Download gff for
BS12471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz3-RA | 204..1949 | 17..1762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:29 Download gff for
BS12471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz3-RA | 202..1947 | 17..1762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:36 Download gff for
BS12471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz3-RA | 204..1949 | 17..1762 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:36 Download gff for
BS12471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 781476..783002 | 236..1762 | 100 | | Plus |
| X | 770229..770447 | 17..235 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:30 Download gff for
BS12471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 664262..664480 | 17..235 | 100 | -> | Plus |
| arm_X | 675509..677035 | 236..1762 | 100 | | Plus |
BS12471.pep Sequence
Translation from 16 to 1761
> BS12471.pep
MYAASILILHLTWAVATIAANGAGHNGPVASGAGPNGLQCQPIAVSACQG
LGYNMTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPL
CTPDVPRPVAACKLLCETVRGECMENAPPELMELWPSFLNCDGLPQPEKH
ELCMQIPQEVAVPGGSPSGPPTTGSPGVEDHPQTYRFWKSGASPTSDLAG
VLCPQNFSGSPFNPEECVPQCQRDAFHTSSQKKTSETLILGLSAVCFVLT
LFALVTFWAEPTRFGYPERPVLFLCLCYNLFSVCYLERIVFHNQARMHDV
ELQWRLMRPGCLLTPPCLASYITTSYLSLCAASWWLIFALCFYLSSHKKW
SSEALEKRSGLFHVLAWVPPLAPPIAALLLEKVRPSELTGMCYAPGFVEL
PALVLLLLGLYFTLRASRSLLSLQQQLQPTLAHHRFGQIRKRFVLFSLLY
FAPTTAGVVAALCERYADSVPSCSTPDDCLSPTPLSAWPALVRIFFQLVG
GTLTGLWVWSRKTCESYRNRLGASGTPTSSLMNQSKAAGALPKKHLYTSG
KSMLPTGGITPLYAGISFHNVPVYNPNQSRV*
BS12471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz3-PC | 581 | CG16785-PC | 1..581 | 1..581 | 3118 | 100 | Plus |
| fz3-PA | 581 | CG16785-PA | 1..581 | 1..581 | 3118 | 100 | Plus |
| fz3-PB | 646 | CG16785-PB | 138..646 | 73..581 | 2741 | 100 | Plus |
| fz2-PG | 694 | CG9739-PG | 45..654 | 19..557 | 550 | 27.5 | Plus |
| fz2-PE | 694 | CG9739-PE | 45..654 | 19..557 | 550 | 27.5 | Plus |
