BS12478.complete Sequence
1037 bp assembled on 2006-11-01
GenBank Submission: FJ637198
> BS12478.complete
GAAGTTATCAGTCGACATGCGGCGCCTGGTGCGAAATTGGAATTGCCGAT
TGTTATTTAACGCCAAATCCGGCCAAGAAATTGTCAGCCATGCCGGAATT
CACCAGGAGGCCAAGACCAATGCGATTCCCAGGGAAAAGAAAGTGATTGA
GGCGGACAAGAATGGATACGGGGCCAAACATTGCATGAGTCTAGTGGAGA
AATACGACTACGAGAACTACCTGTGCACCTTGCTCCTACCACGGGAACTG
CGACGTGCTGCCTTCGCCCTACGGGCATTCAATGTGGAGGTCTCCAGATC
GGTTAGCGGCCATCAAATTGAGCCGCAAATAGCCAAAATGCGCCTTAAGT
TCTGGCACGACTCCATAGACAAGTGCTTTGAGCCGGATTCCCAAAGATCG
TACGTGGAGGACCAGCCTGTCCTGCGCGAACTGAAGCACACGGTGGGCAG
TCGCAAGCTAAATAAGGTATATTTGCGCCGTCTGGTCACAGCACGGGAAC
GTCCGCCCACGCATGCATTTGAGTCGATACGCGAGCTGGAGGAGTACACG
GAACAGACCTTCTCTTCGCTATTGCTCCTGCTGTTGGAGGTGGGCGGAGT
GCGTGACCTAAATGCTGATCATGCCGCCTCCCACTTGGGCAAGGCCCAAG
GCATCGCCACCCTGCTGCGATCGATACCGCTGGCAGGACGTCAGCAGGCG
CCCTGCATTCCGCTCGAGGTGCTGGTGCTGCATGGCGTCAGCCAGGAGCG
CATCATTCGCTCTAAGAGCGACGACAAGGGTGTCGAGGACTGTATATTCG
ATGTGGCCAGTGCCGCCAATACGCACCTAAAGCTCGCCAGGCAGCTGCAC
GATAAGGTGCCGCCGCAGGTGCGCAAGATCTTCCTCTCCGCCGTGGCCAC
GGATGCATATTTGGAGCGCCTCCGCCGTGCCAACTTCCTGCTAACCCACA
AGAGCTGCGTAGGCCGCGACACCTTACTGCCAGCACGTTTATTCTGGAAG
TCGCTGCTTAATCGGTTCTGAAAGCTTTCTAGACCAT
BS12478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sicily-RB | 1005 | CG15738-PB | 1..1005 | 17..1021 | 5025 | 100 | Plus |
| sicily-RA | 1005 | CG15738-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sicily-RB | 1385 | CG15738-RB | 307..1315 | 17..1025 | 5030 | 99.9 | Plus |
| sicily-RA | 1110 | CG15738-RA | 32..1040 | 17..1025 | 5030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11892730..11893356 | 314..940 | 3135 | 100 | Plus |
| X | 23542271 | X | 11892038..11892220 | 17..199 | 915 | 100 | Plus |
| X | 23542271 | X | 11892289..11892403 | 199..313 | 575 | 100 | Plus |
| X | 23542271 | X | 11893590..11893675 | 940..1025 | 415 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:32:48 has no hits.
BS12478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:18 Download gff for
BS12478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15738-RA | 1..1005 | 17..1021 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:56 Download gff for
BS12478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15738-RA | 24..1042 | 9..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:05 Download gff for
BS12478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sicily-RA | 32..1035 | 17..1020 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:18 Download gff for
BS12478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15738-RA | 24..1042 | 9..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:34 Download gff for
BS12478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sicily-RA | 32..1035 | 17..1020 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:34 Download gff for
BS12478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11892038..11892219 | 17..198 | 100 | -> | Plus |
| X | 11892289..11892403 | 199..313 | 100 | -> | Plus |
| X | 11892730..11893355 | 314..939 | 100 | -> | Plus |
| X | 11893590..11893670 | 940..1020 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:05 Download gff for
BS12478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11786071..11786252 | 17..198 | 100 | -> | Plus |
| arm_X | 11786322..11786436 | 199..313 | 100 | -> | Plus |
| arm_X | 11786763..11787388 | 314..939 | 100 | -> | Plus |
| arm_X | 11787623..11787703 | 940..1020 | 100 | | Plus |
BS12478.pep Sequence
Translation from 16 to 1020
> BS12478.pep
MRRLVRNWNCRLLFNAKSGQEIVSHAGIHQEAKTNAIPREKKVIEADKNG
YGAKHCMSLVEKYDYENYLCTLLLPRELRRAAFALRAFNVEVSRSVSGHQ
IEPQIAKMRLKFWHDSIDKCFEPDSQRSYVEDQPVLRELKHTVGSRKLNK
VYLRRLVTARERPPTHAFESIRELEEYTEQTFSSLLLLLLEVGGVRDLNA
DHAASHLGKAQGIATLLRSIPLAGRQQAPCIPLEVLVLHGVSQERIIRSK
SDDKGVEDCIFDVASAANTHLKLARQLHDKVPPQVRKIFLSAVATDAYLE
RLRRANFLLTHKSCVGRDTLLPARLFWKSLLNRF*
BS12478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sicily-PB | 334 | CG15738-PB | 1..334 | 1..334 | 1717 | 100 | Plus |
| sicily-PA | 334 | CG15738-PA | 1..334 | 1..334 | 1717 | 100 | Plus |
