BS12480.complete Sequence
794 bp assembled on 2007-10-17
GenBank Submission: FJ637199
> BS12480.complete
GAAGTTATCAGTCGACATGCATCAAATGTGGAATCGCAACTGGAGCTGGA
CTCTTTTGGTTTTCTCGGCCCTGCTACTTCTCTCGGCGGAGGTGGCCAAT
TCGGAGGAATGCGGCCAGGAGGAGTTCACCAAGTGCGCCGAACCACTTGA
TATGCTGCATTTAACGTCGGACTTCTCGATTGGCCCGGCCAAGAAGGAGG
AACTGGAAAAACTTTGTCATGAGCTGCGCAAGGGCGTGAGGTGCATACAG
AGCTATACCCGGCGTTGCATGGATCTGCAGCAGAGGAATCAGTTCAACAA
GCTCTACCACGACACCAACCAGTTCATCAGGGATCTGTGCAACAAGGGTG
CCTTCCAGGACGAGTACCTCAAGCATGTGCCCTGCTCTGAAATGGCCAAG
AAGGAGTTCGAGGTGTGCTCCAATCGTTATCGGGAGACCATGGTGTTCCT
CAAGCCAAACAAGAACCAGGAAAACTCCGAGAACGGCACCCTGAACGAGA
ACATCAAGACCATTTGCTGCTCCATCAACGAACTTGTGGATTGCTCGGAG
GATGCTGCACGCAAGATCTGCGGCAATGAGGCGGCAAAGTTTACGCGTCA
ACTGGTGGACAAATATGCCAACAGCCTGACCAAGATCTACTGCGAGGACT
TCACCCGAAATCCGGGCATCTGCAGGGATGGCGAGGGCAATGGCTCCACG
CGAGCAGCTGGCAGTAGTTTGGGACTCCTGCTCACAGGGACATTGCTGAC
ACTGCTGGTCAGCAGAGGCAACAGATAGAAGCTTTCTAGACCAT
BS12480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9896-RA | 762 | CG9896-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9896-RA | 2043 | CG9896-RA | 267..1029 | 17..779 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22995324..22995623 | 519..220 | 1500 | 100 | Minus |
| 2R | 25286936 | 2R | 22995890..22996041 | 219..68 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 22994683..22994829 | 779..633 | 735 | 100 | Minus |
| 2R | 25286936 | 2R | 22994885..22995000 | 634..519 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 22996377..22996428 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:19:16 has no hits.
BS12480.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:05 Download gff for
BS12480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9896-RA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:58 Download gff for
BS12480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9896-RA | 263..1028 | 14..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:38 Download gff for
BS12480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9896-RA | 267..1028 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:26 Download gff for
BS12480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9896-RA | 266..1027 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:15 Download gff for
BS12480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9896-RA | 267..1028 | 17..778 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:15 Download gff for
BS12480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22994684..22994827 | 635..778 | 100 | <- | Minus |
| 2R | 22994885..22994999 | 520..634 | 100 | <- | Minus |
| 2R | 22995324..22995623 | 220..519 | 100 | <- | Minus |
| 2R | 22995890..22996040 | 69..219 | 100 | <- | Minus |
| 2R | 22996377..22996428 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:38 Download gff for
BS12480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18882207..18882350 | 635..778 | 100 | <- | Minus |
| arm_2R | 18882408..18882522 | 520..634 | 100 | <- | Minus |
| arm_2R | 18882847..18883146 | 220..519 | 100 | <- | Minus |
| arm_2R | 18883413..18883563 | 69..219 | 100 | <- | Minus |
| arm_2R | 18883900..18883951 | 17..68 | 100 | | Minus |
BS12480.pep Sequence
Translation from 16 to 777
> BS12480.pep
MHQMWNRNWSWTLLVFSALLLLSAEVANSEECGQEEFTKCAEPLDMLHLT
SDFSIGPAKKEELEKLCHELRKGVRCIQSYTRRCMDLQQRNQFNKLYHDT
NQFIRDLCNKGAFQDEYLKHVPCSEMAKKEFEVCSNRYRETMVFLKPNKN
QENSENGTLNENIKTICCSINELVDCSEDAARKICGNEAAKFTRQLVDKY
ANSLTKIYCEDFTRNPGICRDGEGNGSTRAAGSSLGLLLTGTLLTLLVSR
GNR*
BS12480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9896-PA | 253 | CG9896-PA | 1..253 | 1..253 | 1353 | 100 | Plus |
| CG13408-PA | 257 | CG13408-PA | 36..205 | 23..195 | 169 | 23.7 | Plus |
