BS12481.complete Sequence
1283 bp assembled on 2006-11-01
GenBank Submission: FJ637200
> BS12481.complete
GAAGTTATCAGTCGACATGCTGGCCAAAGTGCTAACTATCTTGGCCATCG
TGGCTTCAGCAGGAGCTGCTGACGACTTTGATCCTTTCATAGATATACCC
TTCAAACGGCTCAAGACTTCGGCGGAGCGCATTGCGGAGCACGGCTACCC
GGCCGAATCGCATTTTGTTGAGACCCCGGACGGCTATGTGCTGAATGTGT
TCCGCATTCCCCACTCCCCCAAGCTGAATAGCAATGGCAACGAGGGGGAG
TCGGAGGCATCGCGCCCGGTGGTCCTCATCATGCACGGGCTGTTCAGCTG
CTCGGATTGCTTCCTGCTCAATGGGCCGGAGGATGCGCTGCCGTACAACT
ACGCAGATGCCGGCTACGATGTCTGGCTAGGCAACGCCCGTGGCAACATC
TATTCGAGAAACAACACCCGGCTGAACGTGAAGCATCCGTACTTCTGGAA
GTTTAGCTGGCACGAGATTGGCTCCATCGATTTGCCCGCCACGATTGACT
ACATCCTGGCTGAGACGGGTCAACAGTCGCTGCACTACGTCGGCCATTCC
CAGGGATGCACTTCCTTCTTCGTGATGGGTTCCTACCGGCCGGAGTACAA
TGCCAAGATCAAGACGGCGCACATGCTCGCACCGCCCGTCTACATGGGCA
ACTCCACAGAGGGACTCATTGTGAGCACAGCTCCGCTGTTTGGTCACCAT
GGCATTGGCTCCACGCTGCTGGAAAACCAGGTTTTGCTGCCCCAGAACGC
GTTCATCCAGCGAGTACTGGACACCACATGCAGCAATCAGCCGATCATGC
TCAGCTACTGCAAAACCTTGGCCATCCTCTGGGGAGGTCCCGAAATCGGC
AACCTTAACCAGACTCTGCTCCCGCAAATTGCCGAAACCCATCCCGCTGG
AGTCTCCTCAAACCAGGCCATTCACTACATTCAGTCCTACGCCTCCAACG
ATTTCCGTTTGTACGATTGGGGCAGCAAGAGAAACCTGGAATACTACGGC
GTGTCAGAGCCTCCGGCATATGATCTCACCAAGATCACCTCCGAGCTGTA
CTTATACTATGGCTTGGCTGATGGATCGGCCAATAAGCAGGACATCTCCC
GTCTGCCCGATCTTCTGCCCAATTTGGCACTGCTTCACGAGGTGCCCGAT
TCCACATGGGGTCACTTGGACTTTATCTTCGCCACGGAGGTCAAGAGAGT
GATTAACGATTTGGTTTTGGATTACAGTAAAGCCTACGATGCGCGAGAAA
CTAACAATGAGATTTGAAAGCTTTCTAGACCAT
BS12481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2772-RA | 1251 | CG2772-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2772-RA | 1338 | CG2772-RA | 47..1297 | 17..1267 | 6255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3446348..3447089 | 121..862 | 3710 | 100 | Plus |
| 2L | 23513712 | 2L | 3447141..3447548 | 860..1267 | 2040 | 100 | Plus |
| 2L | 23513712 | 2L | 3446038..3446143 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:46:53 has no hits.
BS12481.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:21 Download gff for
BS12481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2772-RA | 1..1251 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:58 Download gff for
BS12481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2772-RA | 28..1292 | 2..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:24 Download gff for
BS12481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2772-RA | 47..1296 | 17..1266 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:21 Download gff for
BS12481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2772-RA | 28..1292 | 2..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:49 Download gff for
BS12481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2772-RA | 47..1296 | 17..1266 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:49 Download gff for
BS12481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3446038..3446142 | 17..121 | 100 | -> | Plus |
| 2L | 3446349..3447089 | 122..862 | 100 | -> | Plus |
| 2L | 3447144..3447547 | 863..1266 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:24 Download gff for
BS12481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3446038..3446142 | 17..121 | 100 | -> | Plus |
| arm_2L | 3446349..3447089 | 122..862 | 100 | -> | Plus |
| arm_2L | 3447144..3447547 | 863..1266 | 100 | | Plus |
BS12481.pep Sequence
Translation from 16 to 1266
> BS12481.pep
MLAKVLTILAIVASAGAADDFDPFIDIPFKRLKTSAERIAEHGYPAESHF
VETPDGYVLNVFRIPHSPKLNSNGNEGESEASRPVVLIMHGLFSCSDCFL
LNGPEDALPYNYADAGYDVWLGNARGNIYSRNNTRLNVKHPYFWKFSWHE
IGSIDLPATIDYILAETGQQSLHYVGHSQGCTSFFVMGSYRPEYNAKIKT
AHMLAPPVYMGNSTEGLIVSTAPLFGHHGIGSTLLENQVLLPQNAFIQRV
LDTTCSNQPIMLSYCKTLAILWGGPEIGNLNQTLLPQIAETHPAGVSSNQ
AIHYIQSYASNDFRLYDWGSKRNLEYYGVSEPPAYDLTKITSELYLYYGL
ADGSANKQDISRLPDLLPNLALLHEVPDSTWGHLDFIFATEVKRVINDLV
LDYSKAYDARETNNEI*
BS12481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2772-PA | 416 | CG2772-PA | 1..416 | 1..416 | 2215 | 100 | Plus |
| CG31089-PA | 421 | CG31089-PA | 10..417 | 5..410 | 917 | 45.2 | Plus |
| mag-PA | 399 | CG5932-PA | 23..399 | 26..410 | 894 | 46.4 | Plus |
| CG31091-PC | 424 | CG31091-PC | 59..424 | 39..410 | 815 | 42.7 | Plus |
| CG31091-PB | 424 | CG31091-PB | 59..424 | 39..410 | 815 | 42.7 | Plus |
