BS12485.complete Sequence
797 bp assembled on 2006-11-01
GenBank Submission: FJ637203
> BS12485.complete
GAAGTTATCAGTCGACATGAAGACCTGGGCCTTAACTTTAGTGGTCATAT
TCTTGGCCAGCTCCTGCTCGGCAGCTCCCACCACACAGAACAGGATAGAA
ACCGATCCTGAACTGACAGCTGGCTATATTGAAGGCGACATGGTGCCCAG
TCCGGAGGGAAGGAACGGACTTCGCAATGAAACCTTCAGATGGCCAAACC
GCATTGTCTATTATTACATCAATCGCGATATTGACACCGAGCATCGCAAC
CATATTCTAAGAGGTATTCGCATAATAGAACAAAGTTCTTGCTTGGTCTT
CAAGGAGGCCACCACTGATCAGGAATATTATGTGAATGTTACCTCGGAGG
CTGGAGGATGTTACTCGTATGTTGGCTATCGCAACCGGGTTCAGCAGCTG
AATCTGCAGACCTACGCTCTGGACACCGGCTGCTTCCGTCTGGGAACAAT
TGTCCACGAGTTCCTGCATGCCCTTGGCTTCTATCACCAGCAAAGCACCT
GGAATCGCGATGACTATGTCCGAATTGCTGAGGAAAACATAACTGAGGGC
ACTGAGGGCAACTTCAACAAGTACGACAATGAAACCGTCGAGGACTACGG
AGAACCCTATGATTACTCCAGTGTACTACACTACACCGCTTATGCGTTCT
CTAAAAACGGAGAGATGACCATTGTGCCGCTACAGGAAGGTGCCGAAGAA
CTTATGGGGCAGCGATTGCAAATGACCCAGTCGGATATTAACAAACTTAA
CGTCATGTACAAGTGCCCCAGGCAGGTGTAAAAGCTTTCTAGACCAT
BS12485.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15254-RB | 765 | CG15254-PB | 1..765 | 17..781 | 3825 | 100 | Plus |
| CG15254-RA | 765 | CG15254-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
| CG15253-RA | 762 | CG15253-PA | 71..529 | 93..551 | 420 | 72.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15254-RB | 868 | CG15254-RB | 36..802 | 15..781 | 3835 | 100 | Plus |
| CG15254-RA | 825 | CG15254-RA | 36..802 | 15..781 | 3835 | 100 | Plus |
| CG15253-RA | 942 | CG15253-RA | 89..547 | 93..551 | 420 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15613971..15614519 | 781..233 | 2745 | 100 | Minus |
| 2L | 23513712 | 2L | 15614575..15614793 | 233..15 | 1095 | 100 | Minus |
| 2L | 23513712 | 2L | 15616205..15616263 | 151..93 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:14:03 has no hits.
BS12485.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:24 Download gff for
BS12485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15254-RA | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:00 Download gff for
BS12485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15254-RA | 27..798 | 9..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:16 Download gff for
BS12485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15254-RA | 38..800 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:24 Download gff for
BS12485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15254-RA | 27..798 | 9..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:42 Download gff for
BS12485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15254-RA | 38..800 | 17..779 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:42 Download gff for
BS12485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15613973..15614518 | 234..779 | 100 | <- | Minus |
| 2L | 15614575..15614791 | 17..233 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:16 Download gff for
BS12485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15614575..15614791 | 17..233 | 100 | | Minus |
| arm_2L | 15613973..15614518 | 234..779 | 100 | <- | Minus |
BS12485.pep Sequence
Translation from 16 to 780
> BS12485.pep
MKTWALTLVVIFLASSCSAAPTTQNRIETDPELTAGYIEGDMVPSPEGRN
GLRNETFRWPNRIVYYYINRDIDTEHRNHILRGIRIIEQSSCLVFKEATT
DQEYYVNVTSEAGGCYSYVGYRNRVQQLNLQTYALDTGCFRLGTIVHEFL
HALGFYHQQSTWNRDDYVRIAEENITEGTEGNFNKYDNETVEDYGEPYDY
SSVLHYTAYAFSKNGEMTIVPLQEGAEELMGQRLQMTQSDINKLNVMYKC
PRQV*
BS12485.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15254-PB | 254 | CG15254-PB | 1..254 | 1..254 | 1359 | 100 | Plus |
| CG15254-PA | 254 | CG15254-PA | 1..254 | 1..254 | 1359 | 100 | Plus |
| CG15253-PA | 253 | CG15253-PA | 4..249 | 4..251 | 890 | 66.5 | Plus |
| CG7631-PA | 254 | CG7631-PA | 2..254 | 1..254 | 627 | 48.8 | Plus |
| CG15255-PB | 261 | CG15255-PB | 28..258 | 30..251 | 591 | 48.9 | Plus |
