BS12488.complete Sequence
452 bp assembled on 2006-11-01
GenBank Submission: FJ637204
> BS12488.complete
GAAGTTATCAGTCGACATGAACTCCTACTTCGTGATCGCTTTGAGTGCTC
TTTTTGTGACTCTGGCTGTTGGATCGTCCCTTAATCTGAGCGACGAGCAG
AAGGATCTGGCCAAGCAGCATCGTGAGCAGTGCGCCGAGGAAGTGAAACT
TACCGAGGAGGAAAAGGCCAAGGTCAATGCCAAGGACTTCAATAACCCCA
CCGAGAACATCAAGTGCTTTGCCAACTGCTTCTTCGAGAAGGTCGGAACC
CTGAAGGACGGTGAGCTGCAGGAGTCAGTGGTGCTGGAGAAGCTCGGCGC
TCTCATTGGCGAGGAGAAGACCAAGGCGGCTCTGGAGAAGTGCAGGACCA
TCAAGGGCGAGAACAAGTGTGATACCGCCTCCAAGTTGTACGATTGCTTC
GAGAGCTTCAAGCCCGCCCCCGAGGCTAAGGCCTAAAAGCTTTCTAGACC
AT
BS12488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp56a-RA | 420 | CG11797-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp56a-RA | 547 | CG11797-RA | 46..468 | 15..437 | 2115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19698068..19698429 | 76..437 | 1810 | 100 | Plus |
| 2R | 25286936 | 2R | 19697768..19697829 | 15..76 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:05:44 has no hits.
BS12488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:25 Download gff for
BS12488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56a-RA | 1..420 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:01 Download gff for
BS12488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56a-RA | 34..468 | 2..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:32 Download gff for
BS12488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56a-RA | 48..465 | 17..434 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:25 Download gff for
BS12488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56a-RA | 34..468 | 2..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:53 Download gff for
BS12488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56a-RA | 48..465 | 17..434 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:53 Download gff for
BS12488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19697770..19697829 | 17..76 | 100 | -> | Plus |
| 2R | 19698069..19698426 | 77..434 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:32 Download gff for
BS12488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15585275..15585334 | 17..76 | 100 | -> | Plus |
| arm_2R | 15585574..15585931 | 77..434 | 100 | | Plus |
BS12488.pep Sequence
Translation from 16 to 435
> BS12488.pep
MNSYFVIALSALFVTLAVGSSLNLSDEQKDLAKQHREQCAEEVKLTEEEK
AKVNAKDFNNPTENIKCFANCFFEKVGTLKDGELQESVVLEKLGALIGEE
KTKAALEKCRTIKGENKCDTASKLYDCFESFKPAPEAKA*
BS12488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp56a-PA | 139 | CG11797-PA | 1..139 | 1..139 | 711 | 100 | Plus |
| Obp56d-PB | 131 | CG11218-PB | 3..124 | 5..128 | 265 | 42.7 | Plus |
| Obp56d-PA | 131 | CG11218-PA | 3..124 | 5..128 | 265 | 42.7 | Plus |
| Obp56e-PA | 132 | CG8462-PA | 1..125 | 1..128 | 245 | 37.5 | Plus |
| Obp56e-PB | 131 | CG8462-PB | 1..124 | 1..128 | 234 | 36.7 | Plus |
