Clone BS12490 Report

Search the DGRC for BS12490

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG1983-RA
Protein status:BS12490.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12490.complete Sequence

797 bp assembled on 2006-11-01

GenBank Submission: FJ637205

> BS12490.complete
GAAGTTATCAGTCGACATGCTAAGACGCACAATGGCGGAATTCGACGTCA
AAGCCGGCCTGCAGCACGTGTTGAAGCGCATAGACGAGGTGCTCCTCCAG
CGGCCCAAAGAAGTTCAAGCTGCCAGGCCGCTGCTCGTTGCTGTAAGCAA
AACAAAGCCAGCGGAGGCCGTAATCGAGGCTTACGAGGGCGGACAAAGAG
ACTTCGGTGAGAACTATGTACAGGAGCTGGAGGAGAAGAGCCGCCACCCG
GACATTCTGGCCAAGTGCCCCGACATCAGGTGGCACTTCATAGGCCACAT
GCAAAGCAACAAGATCAACAAGATCCTTTCTGTGCCAAATCTGCATATGA
TCCAGACCGTAGATAGCGAGAAGTTGGCCACCAAACTGGACGCAGCCTGG
TCTAAGCGACAGCCCACCCCTGAGGAGCCATTGCAGGTGCTCATCCAGAT
CAACACTAGTGGTGAAGACGTTAAAAGCGGAATAGAGGCGAAAGATGCTC
CTGCACTCTACCAGTACATCAAGAGCAACCTTAAACACCTCAACCTGATG
GGCATAATGACCATTGGTGCATTTGGTTTTGACTACAGCAATGGACCCAA
TCCGGATTTCGTGTCCCTAATGCAGGTGCACAGATCCATATGTGAGGCGC
ACTCCTTGGCCCCGGACTCGGTGCTCGTCTCCATGGGAATGTCCAACGAC
TTCGACAAGGCGATCGAAATGGGCAGCACAGTGGTGCGCGTTGGCTCTTC
TATTTTCGGCCATCGGGCGGCCAAGGTGTAAAAGCTTTCTAGACCAT

BS12490.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1983-RB 765 CG1983-PB 1..765 17..781 3825 100 Plus
CG1983-RA 765 CG1983-PA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1983-RB 1582 CG1983-RB 87..851 17..781 3825 100 Plus
CG1983-RA 1137 CG1983-RA 87..851 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30176643..30176885 712..470 1215 100 Minus
3R 32079331 3R 30177177..30177389 322..110 1065 100 Minus
3R 32079331 3R 30176944..30177093 470..321 750 100 Minus
2R 25286936 2R 2083319..2083441 470..592 510 94.3 Plus
3R 32079331 3R 30177453..30177546 110..17 470 100 Minus
3R 32079331 3R 30176517..30176586 781..712 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:03:14 has no hits.

BS12490.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:26 Download gff for BS12490.complete
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 1..765 17..781 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:03 Download gff for BS12490.complete
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 59..827 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:39:09 Download gff for BS12490.complete
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 87..849 17..779 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:26 Download gff for BS12490.complete
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 59..827 17..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:44 Download gff for BS12490.complete
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 87..849 17..779 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:44 Download gff for BS12490.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30176519..30176585 713..779 100 <- Minus
3R 30176643..30176884 471..712 100 <- Minus
3R 30176944..30177091 323..470 100 <- Minus
3R 30177177..30177389 110..322 100 <- Minus
3R 30177454..30177546 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:39:09 Download gff for BS12490.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26002241..26002307 713..779 100 <- Minus
arm_3R 26002365..26002606 471..712 100 <- Minus
arm_3R 26002666..26002813 323..470 100 <- Minus
arm_3R 26002899..26003111 110..322 100 <- Minus
arm_3R 26003176..26003268 17..109 100   Minus

BS12490.pep Sequence

Translation from 16 to 780

> BS12490.pep
MLRRTMAEFDVKAGLQHVLKRIDEVLLQRPKEVQAARPLLVAVSKTKPAE
AVIEAYEGGQRDFGENYVQELEEKSRHPDILAKCPDIRWHFIGHMQSNKI
NKILSVPNLHMIQTVDSEKLATKLDAAWSKRQPTPEEPLQVLIQINTSGE
DVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGAFGFDYSNGPNPDFVS
LMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSIFGHR
AAKV*

BS12490.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1983-PB 254 CG1983-PB 1..254 1..254 1301 100 Plus
CG1983-PA 254 CG1983-PA 1..254 1..254 1301 100 Plus