BS12490.complete Sequence
797 bp assembled on 2006-11-01
GenBank Submission: FJ637205
> BS12490.complete
GAAGTTATCAGTCGACATGCTAAGACGCACAATGGCGGAATTCGACGTCA
AAGCCGGCCTGCAGCACGTGTTGAAGCGCATAGACGAGGTGCTCCTCCAG
CGGCCCAAAGAAGTTCAAGCTGCCAGGCCGCTGCTCGTTGCTGTAAGCAA
AACAAAGCCAGCGGAGGCCGTAATCGAGGCTTACGAGGGCGGACAAAGAG
ACTTCGGTGAGAACTATGTACAGGAGCTGGAGGAGAAGAGCCGCCACCCG
GACATTCTGGCCAAGTGCCCCGACATCAGGTGGCACTTCATAGGCCACAT
GCAAAGCAACAAGATCAACAAGATCCTTTCTGTGCCAAATCTGCATATGA
TCCAGACCGTAGATAGCGAGAAGTTGGCCACCAAACTGGACGCAGCCTGG
TCTAAGCGACAGCCCACCCCTGAGGAGCCATTGCAGGTGCTCATCCAGAT
CAACACTAGTGGTGAAGACGTTAAAAGCGGAATAGAGGCGAAAGATGCTC
CTGCACTCTACCAGTACATCAAGAGCAACCTTAAACACCTCAACCTGATG
GGCATAATGACCATTGGTGCATTTGGTTTTGACTACAGCAATGGACCCAA
TCCGGATTTCGTGTCCCTAATGCAGGTGCACAGATCCATATGTGAGGCGC
ACTCCTTGGCCCCGGACTCGGTGCTCGTCTCCATGGGAATGTCCAACGAC
TTCGACAAGGCGATCGAAATGGGCAGCACAGTGGTGCGCGTTGGCTCTTC
TATTTTCGGCCATCGGGCGGCCAAGGTGTAAAAGCTTTCTAGACCAT
BS12490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1983-RB | 765 | CG1983-PB | 1..765 | 17..781 | 3825 | 100 | Plus |
CG1983-RA | 765 | CG1983-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1983-RB | 1582 | CG1983-RB | 87..851 | 17..781 | 3825 | 100 | Plus |
CG1983-RA | 1137 | CG1983-RA | 87..851 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30176643..30176885 | 712..470 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 30177177..30177389 | 322..110 | 1065 | 100 | Minus |
3R | 32079331 | 3R | 30176944..30177093 | 470..321 | 750 | 100 | Minus |
2R | 25286936 | 2R | 2083319..2083441 | 470..592 | 510 | 94.3 | Plus |
3R | 32079331 | 3R | 30177453..30177546 | 110..17 | 470 | 100 | Minus |
3R | 32079331 | 3R | 30176517..30176586 | 781..712 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:03:14 has no hits.
BS12490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:26 Download gff for
BS12490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:03 Download gff for
BS12490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 59..827 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:39:09 Download gff for
BS12490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 87..849 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:26 Download gff for
BS12490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 59..827 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:44 Download gff for
BS12490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 87..849 | 17..779 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:44 Download gff for
BS12490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30176519..30176585 | 713..779 | 100 | <- | Minus |
3R | 30176643..30176884 | 471..712 | 100 | <- | Minus |
3R | 30176944..30177091 | 323..470 | 100 | <- | Minus |
3R | 30177177..30177389 | 110..322 | 100 | <- | Minus |
3R | 30177454..30177546 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:39:09 Download gff for
BS12490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26002241..26002307 | 713..779 | 100 | <- | Minus |
arm_3R | 26002365..26002606 | 471..712 | 100 | <- | Minus |
arm_3R | 26002666..26002813 | 323..470 | 100 | <- | Minus |
arm_3R | 26002899..26003111 | 110..322 | 100 | <- | Minus |
arm_3R | 26003176..26003268 | 17..109 | 100 | | Minus |
BS12490.pep Sequence
Translation from 16 to 780
> BS12490.pep
MLRRTMAEFDVKAGLQHVLKRIDEVLLQRPKEVQAARPLLVAVSKTKPAE
AVIEAYEGGQRDFGENYVQELEEKSRHPDILAKCPDIRWHFIGHMQSNKI
NKILSVPNLHMIQTVDSEKLATKLDAAWSKRQPTPEEPLQVLIQINTSGE
DVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGAFGFDYSNGPNPDFVS
LMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSIFGHR
AAKV*
BS12490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1983-PB | 254 | CG1983-PB | 1..254 | 1..254 | 1301 | 100 | Plus |
CG1983-PA | 254 | CG1983-PA | 1..254 | 1..254 | 1301 | 100 | Plus |