Clone BS12491 Report

Search the DGRC for BS12491

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:91
Vector:pDNR-Dual
Associated Gene/Transcriptveli-RA
Protein status:BS12491.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12491.complete Sequence

620 bp assembled on 2006-11-01

GenBank Submission: FJ637206

> BS12491.complete
GAAGTTATCAGTCGACATGGCCGATAACGCAGAACCACTGACTTTGTCCA
GAGATGTCAAAAGATCGATAGAGCTCTTGGAAAAGCTGCAAGCGAGTGGC
GACTTCCCCACGACAAAACTGGCCGCCCTGCAGAAGGTGCTCAACTCGGA
CTTCATGACCTCCGTGCGGGAGGTGTACGAGCACGTCTACGAGACGGTGG
ACATCCAGGGCTCCCACGACGTGAGGGCATCCGCCACTGCCAAGGCCACT
GTGGCAGCCTTCGCAGCCAGCGAGGGGCACGCTCATCCCAGAGTCGTCGA
GCTCCCGAAAACGGAGGAGGGCTTGGGTTTCAATGTAATGGGGGGCAAGG
AGCAAAACTCGCCCATCTATATATCCCGAATAATACCTGGAGGCGTGGCT
GACAGGCATGGTGGTCTGAAAAGGGGAGATCAACTTTTGTCTGTGAATGG
TGTGTCTGTCGAAGGAGAAAACCACGAGAAGGCCGTAGAGCTATTAAAGC
AAGCTGTCGGATCTGTAAAGCTGGTGGTACGCTACACACCAAAGGTTCTC
GAGGAAATGGAAATGCGATTTGATAAGCAACGCAACACACGTCGTCGCCA
ATAAAAGCTTTCTAGACCAT

BS12491.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
veli-RA 588 CG7662-PA 1..588 17..604 2940 100 Plus
veli-RC 741 CG7662-PC 1..305 17..321 1525 100 Plus
veli-RC 741 CG7662-PC 457..741 320..604 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
veli-RA 894 CG7662-RA 78..665 17..604 2940 100 Plus
veli-RC 1047 CG7662-RC 78..382 17..321 1525 100 Plus
veli-RC 1047 CG7662-RC 534..818 320..604 1425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25065147..25065416 321..52 1350 100 Minus
3R 32079331 3R 25064647..25064797 604..454 755 100 Minus
3R 32079331 3R 25064861..25064995 454..320 675 100 Minus
3R 32079331 3R 25065478..25065514 53..17 185 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:38:44 has no hits.

BS12491.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:08 Download gff for BS12491.complete
Subject Subject Range Query Range Percent Splice Strand
veli-RA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:40 Download gff for BS12491.complete
Subject Subject Range Query Range Percent Splice Strand
veli-RA 75..672 9..608 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:40 Download gff for BS12491.complete
Subject Subject Range Query Range Percent Splice Strand
veli-RA 78..663 17..602 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:08 Download gff for BS12491.complete
Subject Subject Range Query Range Percent Splice Strand
veli-RA 76..673 9..608 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:32 Download gff for BS12491.complete
Subject Subject Range Query Range Percent Splice Strand
veli-RA 78..663 17..602 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:32 Download gff for BS12491.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25064649..25064796 455..602 100 <- Minus
3R 25064861..25064994 321..454 100 <- Minus
3R 25065148..25065414 54..320 100 <- Minus
3R 25065478..25065514 17..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:40 Download gff for BS12491.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20890371..20890518 455..602 100 <- Minus
arm_3R 20890583..20890716 321..454 100 <- Minus
arm_3R 20890870..20891136 54..320 100 <- Minus
arm_3R 20891200..20891236 17..53 100   Minus

BS12491.pep Sequence

Translation from 16 to 603

> BS12491.pep
MADNAEPLTLSRDVKRSIELLEKLQASGDFPTTKLAALQKVLNSDFMTSV
REVYEHVYETVDIQGSHDVRASATAKATVAAFAASEGHAHPRVVELPKTE
EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG
ENHEKAVELLKQAVGSVKLVVRYTPKVLEEMEMRFDKQRNTRRRQ*

BS12491.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
veli-PA 195 CG7662-PA 1..195 1..195 977 100 Plus
veli-PC 246 CG7662-PC 1..246 1..195 915 79.3 Plus
dlg1-PK 911 CG1725-PK 426..540 72..187 206 39.7 Plus
dlg1-PH 911 CG1725-PH 426..540 72..187 206 39.7 Plus
dlg1-PT 943 CG1725-PT 473..587 72..187 206 39.7 Plus