BS12491.complete Sequence
620 bp assembled on 2006-11-01
GenBank Submission: FJ637206
> BS12491.complete
GAAGTTATCAGTCGACATGGCCGATAACGCAGAACCACTGACTTTGTCCA
GAGATGTCAAAAGATCGATAGAGCTCTTGGAAAAGCTGCAAGCGAGTGGC
GACTTCCCCACGACAAAACTGGCCGCCCTGCAGAAGGTGCTCAACTCGGA
CTTCATGACCTCCGTGCGGGAGGTGTACGAGCACGTCTACGAGACGGTGG
ACATCCAGGGCTCCCACGACGTGAGGGCATCCGCCACTGCCAAGGCCACT
GTGGCAGCCTTCGCAGCCAGCGAGGGGCACGCTCATCCCAGAGTCGTCGA
GCTCCCGAAAACGGAGGAGGGCTTGGGTTTCAATGTAATGGGGGGCAAGG
AGCAAAACTCGCCCATCTATATATCCCGAATAATACCTGGAGGCGTGGCT
GACAGGCATGGTGGTCTGAAAAGGGGAGATCAACTTTTGTCTGTGAATGG
TGTGTCTGTCGAAGGAGAAAACCACGAGAAGGCCGTAGAGCTATTAAAGC
AAGCTGTCGGATCTGTAAAGCTGGTGGTACGCTACACACCAAAGGTTCTC
GAGGAAATGGAAATGCGATTTGATAAGCAACGCAACACACGTCGTCGCCA
ATAAAAGCTTTCTAGACCAT
BS12491.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
veli-RA | 588 | CG7662-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
veli-RC | 741 | CG7662-PC | 1..305 | 17..321 | 1525 | 100 | Plus |
veli-RC | 741 | CG7662-PC | 457..741 | 320..604 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
veli-RA | 894 | CG7662-RA | 78..665 | 17..604 | 2940 | 100 | Plus |
veli-RC | 1047 | CG7662-RC | 78..382 | 17..321 | 1525 | 100 | Plus |
veli-RC | 1047 | CG7662-RC | 534..818 | 320..604 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25065147..25065416 | 321..52 | 1350 | 100 | Minus |
3R | 32079331 | 3R | 25064647..25064797 | 604..454 | 755 | 100 | Minus |
3R | 32079331 | 3R | 25064861..25064995 | 454..320 | 675 | 100 | Minus |
3R | 32079331 | 3R | 25065478..25065514 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:38:44 has no hits.
BS12491.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:08 Download gff for
BS12491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:40 Download gff for
BS12491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 75..672 | 9..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:40 Download gff for
BS12491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 78..663 | 17..602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:08 Download gff for
BS12491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 76..673 | 9..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:32 Download gff for
BS12491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 78..663 | 17..602 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:32 Download gff for
BS12491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25064649..25064796 | 455..602 | 100 | <- | Minus |
3R | 25064861..25064994 | 321..454 | 100 | <- | Minus |
3R | 25065148..25065414 | 54..320 | 100 | <- | Minus |
3R | 25065478..25065514 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:40 Download gff for
BS12491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20890371..20890518 | 455..602 | 100 | <- | Minus |
arm_3R | 20890583..20890716 | 321..454 | 100 | <- | Minus |
arm_3R | 20890870..20891136 | 54..320 | 100 | <- | Minus |
arm_3R | 20891200..20891236 | 17..53 | 100 | | Minus |
BS12491.pep Sequence
Translation from 16 to 603
> BS12491.pep
MADNAEPLTLSRDVKRSIELLEKLQASGDFPTTKLAALQKVLNSDFMTSV
REVYEHVYETVDIQGSHDVRASATAKATVAAFAASEGHAHPRVVELPKTE
EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG
ENHEKAVELLKQAVGSVKLVVRYTPKVLEEMEMRFDKQRNTRRRQ*
BS12491.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
veli-PA | 195 | CG7662-PA | 1..195 | 1..195 | 977 | 100 | Plus |
veli-PC | 246 | CG7662-PC | 1..246 | 1..195 | 915 | 79.3 | Plus |
dlg1-PK | 911 | CG1725-PK | 426..540 | 72..187 | 206 | 39.7 | Plus |
dlg1-PH | 911 | CG1725-PH | 426..540 | 72..187 | 206 | 39.7 | Plus |
dlg1-PT | 943 | CG1725-PT | 473..587 | 72..187 | 206 | 39.7 | Plus |