BS12493.complete Sequence
509 bp assembled on 2006-11-01
GenBank Submission: FJ637208
> BS12493.complete
GAAGTTATCAGTCGACATGCCACGCTACCGTGAATGGGATTTAGCCTGCA
AAGTTTACGTGGGCAATCTGGGATCCTCGGCCTCCAAATACGAGATCGAG
AACGCCTTTAGCAAATACGGACCCTTGCGCAACGTCTGGGTGGCCCGCAA
TCCGCCCGGTTTCGCCTTCGTCGAGTTCGAGGATCGTCGCGACGCTGAGG
ATGCGACCCGTGGCCTCGACGGCACCCGCTGCTGTGGCACCCGCATCCGT
GTCGAAATGTCATCAGGCCGTTCACGAGAGGGTCGCGGCGGTGGCGGTGG
AGGCGGCGGTGGTGGAGGCGGATCCGGTGGCGGCGGCCGCGGCGGTGGCA
GTGGCGCCCGTGCTGGAGGCGGTGGAAGGGCTGGCGATGGCGGTGGACGC
TATAGATCACGCTCACCCCGCCGCTCAAGGACACGCAGCCGCAGCTTTTC
GAGGGATCGTCGCAGTCGCTCCGACTCCAGGGACCGCCATTAGAAGCTTT
CTAGACCAT
BS12493.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-like-RC | 477 | CG1987-PC | 1..477 | 17..493 | 2385 | 100 | Plus |
Rbp1-like-RA | 477 | CG1987-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Rbp1-like-RB | 744 | CG1987-PB | 1..389 | 17..405 | 1945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-like-RC | 1456 | CG1987-RC | 190..667 | 17..494 | 2390 | 100 | Plus |
Rbp1-like-RA | 917 | CG1987-RA | 190..667 | 17..494 | 2390 | 100 | Plus |
Rbp1-like-RB | 2452 | CG1987-RB | 190..578 | 17..405 | 1945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13384300..13384688 | 405..17 | 1945 | 100 | Minus |
3R | 32079331 | 3R | 10784625..10784830 | 35..240 | 460 | 81.6 | Plus |
X | 23542271 | X | 13380955..13381045 | 494..404 | 455 | 100 | Minus |
2L | 23513712 | 2L | 6919787..6919843 | 181..125 | 180 | 87.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:42:04 has no hits.
BS12493.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:10 Download gff for
BS12493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:45 Download gff for
BS12493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 182..663 | 9..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:46 Download gff for
BS12493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 190..666 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:10 Download gff for
BS12493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 182..663 | 9..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:18 Download gff for
BS12493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 190..666 | 17..493 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:18 Download gff for
BS12493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13380956..13381043 | 406..493 | 100 | <- | Minus |
X | 13384300..13384688 | 17..405 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:46 Download gff for
BS12493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13274989..13275076 | 406..493 | 100 | <- | Minus |
arm_X | 13278333..13278721 | 17..405 | 100 | | Minus |
BS12493.pep Sequence
Translation from 16 to 492
> BS12493.pep
MPRYREWDLACKVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFA
FVEFEDRRDAEDATRGLDGTRCCGTRIRVEMSSGRSREGRGGGGGGGGGG
GGSGGGGRGGGSGARAGGGGRAGDGGGRYRSRSPRRSRTRSRSFSRDRRS
RSDSRDRH*
BS12493.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-like-PC | 158 | CG1987-PC | 1..158 | 1..158 | 852 | 100 | Plus |
Rbp1-like-PA | 158 | CG1987-PA | 1..158 | 1..158 | 852 | 100 | Plus |
Rbp1-like-PB | 247 | CG1987-PB | 1..139 | 1..139 | 718 | 95 | Plus |
Rbp1-PA | 135 | CG17136-PA | 1..135 | 1..158 | 591 | 75.5 | Plus |
Rbp1-PD | 144 | CG17136-PD | 1..101 | 1..101 | 479 | 88.1 | Plus |