Clone BS12493 Report

Search the DGRC for BS12493

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptRbp1-like-RA
Protein status:BS12493.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12493.complete Sequence

509 bp assembled on 2006-11-01

GenBank Submission: FJ637208

> BS12493.complete
GAAGTTATCAGTCGACATGCCACGCTACCGTGAATGGGATTTAGCCTGCA
AAGTTTACGTGGGCAATCTGGGATCCTCGGCCTCCAAATACGAGATCGAG
AACGCCTTTAGCAAATACGGACCCTTGCGCAACGTCTGGGTGGCCCGCAA
TCCGCCCGGTTTCGCCTTCGTCGAGTTCGAGGATCGTCGCGACGCTGAGG
ATGCGACCCGTGGCCTCGACGGCACCCGCTGCTGTGGCACCCGCATCCGT
GTCGAAATGTCATCAGGCCGTTCACGAGAGGGTCGCGGCGGTGGCGGTGG
AGGCGGCGGTGGTGGAGGCGGATCCGGTGGCGGCGGCCGCGGCGGTGGCA
GTGGCGCCCGTGCTGGAGGCGGTGGAAGGGCTGGCGATGGCGGTGGACGC
TATAGATCACGCTCACCCCGCCGCTCAAGGACACGCAGCCGCAGCTTTTC
GAGGGATCGTCGCAGTCGCTCCGACTCCAGGGACCGCCATTAGAAGCTTT
CTAGACCAT

BS12493.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-like-RC 477 CG1987-PC 1..477 17..493 2385 100 Plus
Rbp1-like-RA 477 CG1987-PA 1..477 17..493 2385 100 Plus
Rbp1-like-RB 744 CG1987-PB 1..389 17..405 1945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-like-RC 1456 CG1987-RC 190..667 17..494 2390 100 Plus
Rbp1-like-RA 917 CG1987-RA 190..667 17..494 2390 100 Plus
Rbp1-like-RB 2452 CG1987-RB 190..578 17..405 1945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13384300..13384688 405..17 1945 100 Minus
3R 32079331 3R 10784625..10784830 35..240 460 81.6 Plus
X 23542271 X 13380955..13381045 494..404 455 100 Minus
2L 23513712 2L 6919787..6919843 181..125 180 87.7 Minus
Blast to na_te.dros performed on 2014-11-27 15:42:04 has no hits.

BS12493.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:10 Download gff for BS12493.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 1..477 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:45 Download gff for BS12493.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 182..663 9..494 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:46 Download gff for BS12493.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 190..666 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:10 Download gff for BS12493.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 182..663 9..494 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:18 Download gff for BS12493.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 190..666 17..493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:18 Download gff for BS12493.complete
Subject Subject Range Query Range Percent Splice Strand
X 13380956..13381043 406..493 100 <- Minus
X 13384300..13384688 17..405 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:46 Download gff for BS12493.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13274989..13275076 406..493 100 <- Minus
arm_X 13278333..13278721 17..405 100   Minus

BS12493.pep Sequence

Translation from 16 to 492

> BS12493.pep
MPRYREWDLACKVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFA
FVEFEDRRDAEDATRGLDGTRCCGTRIRVEMSSGRSREGRGGGGGGGGGG
GGSGGGGRGGGSGARAGGGGRAGDGGGRYRSRSPRRSRTRSRSFSRDRRS
RSDSRDRH*

BS12493.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-like-PC 158 CG1987-PC 1..158 1..158 852 100 Plus
Rbp1-like-PA 158 CG1987-PA 1..158 1..158 852 100 Plus
Rbp1-like-PB 247 CG1987-PB 1..139 1..139 718 95 Plus
Rbp1-PA 135 CG17136-PA 1..135 1..158 591 75.5 Plus
Rbp1-PD 144 CG17136-PD 1..101 1..101 479 88.1 Plus