BS12494.complete Sequence
668 bp assembled on 2009-02-12
> BS12494.complete
GAAGTTATCAGTCGACATGTTTTCCAAATTCTCCCTGCTCGCCGTGGTTC
TCGCTTTTGGCCTGGTTTCTGGCCTCAGCCTTAGCCTCGTGGTAAAGCCT
TCCAAGCTGAAGCTGCCCACCAACAAGAAGATCCTTGGCCTTCAGCAGCA
AACGGAAGAGCTGGCTGCTCGGGATCCTGGCACTTCGGTACGCTGCTTCG
ACTACTACATACCCATCATCAACGGGCTGTCGGCCCAGTACGAACTGGAC
TACAATAAGTGCGTTAAGGACTACGACACCGCCAGCGAACTGGTCCTCGC
CGCCTGGAACAGCACTCTCTTCGGCATCCAGGCTTCCGGGGATCGTGGCT
GCAACACCTTCTTCGACTGCTCCTCCATTGTGGACTTCGTGCTCGCCTTC
GAGTGCTTCGCCAACGTCGGAGCTGAGCAATCAAAAATCATGTACCAAGT
CTCGGCGAATGCCACCGAAGCCGCCGTCCAGATCAAGATCCATTTGCAGA
CTTTGGACAGCCAGTTGGAAAGCTGCTTGAACTATTCCGAAAAGGATTTC
GTGGAGGGCACCTCGCTCTACTATGGAGAACTCAACAAATGCCTTGCTGG
AGCTCCAGTTCCGCAGGATACCACTGCAAATTGGTATTATACCACCGCCT
AAAAGCTTTCTAGACCAT
BS12494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7567-RA | 636 | CG7567-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7567-RA | 770 | CG7567-RA | 38..676 | 16..654 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29587664..29588067 | 419..16 | 2020 | 100 | Minus |
| 3R | 32079331 | 3R | 29587331..29587566 | 654..419 | 1180 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:15:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| opus | 7521 | opus OPUS 7521bp | 6757..6794 | 47..12 | 113 | 81.6 | Minus |
BS12494.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:15 Download gff for
BS12494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7567-RA | 42..668 | 24..650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:18 Download gff for
BS12494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7567-RA | 46..672 | 24..650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:25 Download gff for
BS12494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7567-RA | 46..672 | 24..650 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:25 Download gff for
BS12494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29587335..29587566 | 419..650 | 100 | <- | Minus |
| 3R | 29587665..29588059 | 24..418 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:18 Download gff for
BS12494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25413057..25413288 | 419..650 | 100 | <- | Minus |
| arm_3R | 25413387..25413781 | 24..418 | 100 | | Minus |
BS12494.pep Sequence
Translation from 16 to 651
> BS12494.pep
MFSKFSLLAVVLAFGLVSGLSLSLVVKPSKLKLPTNKKILGLQQQTEELA
ARDPGTSVRCFDYYIPIINGLSAQYELDYNKCVKDYDTASELVLAAWNST
LFGIQASGDRGCNTFFDCSSIVDFVLAFECFANVGAEQSKIMYQVSANAT
EAAVQIKIHLQTLDSQLESCLNYSEKDFVEGTSLYYGELNKCLAGAPVPQ
DTTANWYYTTA*
BS12494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7567-PA | 211 | CG7567-PA | 1..211 | 1..211 | 1088 | 100 | Plus |
| CG10911-PA | 359 | CG10911-PA | 1..196 | 7..204 | 247 | 28.4 | Plus |
| CG10912-PA | 271 | CG10912-PA | 5..196 | 7..203 | 229 | 28.3 | Plus |
| CG11470-PB | 230 | CG11470-PB | 2..212 | 5..210 | 226 | 30.6 | Plus |
| CG11470-PA | 230 | CG11470-PA | 2..212 | 5..210 | 226 | 30.6 | Plus |
