BS12501.complete Sequence
944 bp assembled on 2006-11-01
GenBank Submission: FJ637210
> BS12501.complete
GAAGTTATCAGTCGACATGGCTACATCGGATTTTGTTCTGGGCGGCCTGG
CCTCCGTGGGGGCCACCTTCTTCACCAATCCCATCGAGGTGATCAAGACA
CGGATCCAGCTGCAGGGCGAGCTGGCGGCACGGGGTACCTATGTGGAGCC
CTACAAGGGGATTGTCAATGCCTTCATTACGGTGGCCAAAAATGATGGCA
TTACGGGGCTCCAAAAGGGCCTCGCACCGGCCTTGTACTTCCAGTTCATC
ATCAATTCCTTCCGGCTCAGCATTTATTCGGAGGCAATGGAGAGGCGGTG
GATGCACAACCGGAAGGGTGAGGTGTCCTACGGAATGGGACTACTGTGGG
GCGCCATCGGCGGCGTCGTGGGGTGCTACTTCTCCAGTCCATTTTTCCTG
ATCAAAACTCAGCTGCAATCACAAGCCGCCAAGCAAATCGCCGTTGGCTA
CCAACATGCCCATACTTCCATGACAGATGCCCTGCGTCAGATCTACTCCA
GGAATGGAGTACGAGGACTGTGGAGAGGATCTGTGGCCGCATTGCCCAGG
GCGGCTTTGGGATCAGGTGCCCAGATAGCCACCTTTGGTAAGACCAAAGC
CCTGTTGGTCCAGTACGATCTGGTGACCCAGCCCACGTTGAACTCCTTCT
CGGCTGGCTTGATAGCCGGATCCATTATGTCGGTGGCCATAACGCCGCCA
GATGTAATCACCACGCGTCTGTACAATCAGGGCGTAGACGCCGAAGGACG
CGGTCTTCTTTATCGCGGTTGGCTTGACTGCTTTGTGAAAATCCTACGAT
CAGAGGGCGTTTATGGTATGTACAAGGGGTTCTGGGCCAACTACTTGCGC
ATTGCCCCCCACTCAACCCTTGTGCTGCTATTCTTTGACGAGCTGGTCGC
CGTACGCACAAAGTATAGTAATCAATGAAAGCTTTCTAGACCAT
BS12501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8323-RA | 912 | CG8323-PA | 1..912 | 17..928 | 4560 | 100 | Plus |
CG18327-RB | 915 | CG18327-PB | 1..441 | 17..457 | 360 | 72.1 | Plus |
CG18327-RA | 915 | CG18327-PA | 1..441 | 17..457 | 360 | 72.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8323-RA | 1460 | CG8323-RA | 226..1139 | 15..928 | 4570 | 100 | Plus |
CG18327-RB | 998 | CG18327-RB | 45..485 | 17..457 | 360 | 72.1 | Plus |
CG18327-RA | 1064 | CG18327-RA | 111..551 | 17..457 | 360 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14166138..14166670 | 396..928 | 2650 | 99.8 | Plus |
2R | 25286936 | 2R | 14165276..14165526 | 15..265 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 14165588..14165724 | 264..400 | 685 | 100 | Plus |
2R | 25286936 | 2R | 14167092..14167277 | 17..202 | 270 | 76.3 | Plus |
2R | 25286936 | 2R | 14168910..14168994 | 71..155 | 260 | 87.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:51:41 has no hits.
BS12501.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:11 Download gff for
BS12501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:46 Download gff for
BS12501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 222..1135 | 15..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:11 Download gff for
BS12501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 228..1138 | 17..927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:11 Download gff for
BS12501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 222..1135 | 15..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:44 Download gff for
BS12501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 228..1138 | 17..927 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:44 Download gff for
BS12501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14165278..14165525 | 17..264 | 100 | -> | Plus |
2R | 14165589..14165724 | 265..400 | 100 | -> | Plus |
2R | 14166143..14166669 | 401..927 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:11 Download gff for
BS12501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10052783..10053030 | 17..264 | 100 | -> | Plus |
arm_2R | 10053094..10053229 | 265..400 | 100 | -> | Plus |
arm_2R | 10053648..10054174 | 401..927 | 100 | | Plus |
BS12501.pep Sequence
Translation from 16 to 927
> BS12501.pep
MATSDFVLGGLASVGATFFTNPIEVIKTRIQLQGELAARGTYVEPYKGIV
NAFITVAKNDGITGLQKGLAPALYFQFIINSFRLSIYSEAMERRWMHNRK
GEVSYGMGLLWGAIGGVVGCYFSSPFFLIKTQLQSQAAKQIAVGYQHAHT
SMTDALRQIYSRNGVRGLWRGSVAALPRAALGSGAQIATFGKTKALLVQY
DLVTQPTLNSFSAGLIAGSIMSVAITPPDVITTRLYNQGVDAEGRGLLYR
GWLDCFVKILRSEGVYGMYKGFWANYLRIAPHSTLVLLFFDELVAVRTKY
SNQ*
BS12501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8323-PA | 303 | CG8323-PA | 1..303 | 1..303 | 1556 | 100 | Plus |
CG18327-PB | 304 | CG18327-PB | 1..300 | 1..300 | 1146 | 71 | Plus |
CG18327-PA | 304 | CG18327-PA | 1..300 | 1..300 | 1146 | 71 | Plus |
CG18324-PB | 307 | CG18324-PB | 1..300 | 1..300 | 895 | 54.3 | Plus |
CG18324-PA | 199 | CG18324-PA | 1..192 | 109..300 | 558 | 52.6 | Plus |