Clone BS12501 Report

Search the DGRC for BS12501

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:125
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG8323-RA
Protein status:BS12501.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12501.complete Sequence

944 bp assembled on 2006-11-01

GenBank Submission: FJ637210

> BS12501.complete
GAAGTTATCAGTCGACATGGCTACATCGGATTTTGTTCTGGGCGGCCTGG
CCTCCGTGGGGGCCACCTTCTTCACCAATCCCATCGAGGTGATCAAGACA
CGGATCCAGCTGCAGGGCGAGCTGGCGGCACGGGGTACCTATGTGGAGCC
CTACAAGGGGATTGTCAATGCCTTCATTACGGTGGCCAAAAATGATGGCA
TTACGGGGCTCCAAAAGGGCCTCGCACCGGCCTTGTACTTCCAGTTCATC
ATCAATTCCTTCCGGCTCAGCATTTATTCGGAGGCAATGGAGAGGCGGTG
GATGCACAACCGGAAGGGTGAGGTGTCCTACGGAATGGGACTACTGTGGG
GCGCCATCGGCGGCGTCGTGGGGTGCTACTTCTCCAGTCCATTTTTCCTG
ATCAAAACTCAGCTGCAATCACAAGCCGCCAAGCAAATCGCCGTTGGCTA
CCAACATGCCCATACTTCCATGACAGATGCCCTGCGTCAGATCTACTCCA
GGAATGGAGTACGAGGACTGTGGAGAGGATCTGTGGCCGCATTGCCCAGG
GCGGCTTTGGGATCAGGTGCCCAGATAGCCACCTTTGGTAAGACCAAAGC
CCTGTTGGTCCAGTACGATCTGGTGACCCAGCCCACGTTGAACTCCTTCT
CGGCTGGCTTGATAGCCGGATCCATTATGTCGGTGGCCATAACGCCGCCA
GATGTAATCACCACGCGTCTGTACAATCAGGGCGTAGACGCCGAAGGACG
CGGTCTTCTTTATCGCGGTTGGCTTGACTGCTTTGTGAAAATCCTACGAT
CAGAGGGCGTTTATGGTATGTACAAGGGGTTCTGGGCCAACTACTTGCGC
ATTGCCCCCCACTCAACCCTTGTGCTGCTATTCTTTGACGAGCTGGTCGC
CGTACGCACAAAGTATAGTAATCAATGAAAGCTTTCTAGACCAT

BS12501.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8323-RA 912 CG8323-PA 1..912 17..928 4560 100 Plus
CG18327-RB 915 CG18327-PB 1..441 17..457 360 72.1 Plus
CG18327-RA 915 CG18327-PA 1..441 17..457 360 72.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8323-RA 1460 CG8323-RA 226..1139 15..928 4570 100 Plus
CG18327-RB 998 CG18327-RB 45..485 17..457 360 72.1 Plus
CG18327-RA 1064 CG18327-RA 111..551 17..457 360 72.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14166138..14166670 396..928 2650 99.8 Plus
2R 25286936 2R 14165276..14165526 15..265 1255 100 Plus
2R 25286936 2R 14165588..14165724 264..400 685 100 Plus
2R 25286936 2R 14167092..14167277 17..202 270 76.3 Plus
2R 25286936 2R 14168910..14168994 71..155 260 87.1 Plus
Blast to na_te.dros performed on 2014-11-27 08:51:41 has no hits.

BS12501.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:11 Download gff for BS12501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 1..912 17..928 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:46 Download gff for BS12501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 222..1135 15..928 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:11 Download gff for BS12501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 228..1138 17..927 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:11 Download gff for BS12501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 222..1135 15..928 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:44 Download gff for BS12501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 228..1138 17..927 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:44 Download gff for BS12501.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14165278..14165525 17..264 100 -> Plus
2R 14165589..14165724 265..400 100 -> Plus
2R 14166143..14166669 401..927 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:11 Download gff for BS12501.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10052783..10053030 17..264 100 -> Plus
arm_2R 10053094..10053229 265..400 100 -> Plus
arm_2R 10053648..10054174 401..927 100   Plus

BS12501.pep Sequence

Translation from 16 to 927

> BS12501.pep
MATSDFVLGGLASVGATFFTNPIEVIKTRIQLQGELAARGTYVEPYKGIV
NAFITVAKNDGITGLQKGLAPALYFQFIINSFRLSIYSEAMERRWMHNRK
GEVSYGMGLLWGAIGGVVGCYFSSPFFLIKTQLQSQAAKQIAVGYQHAHT
SMTDALRQIYSRNGVRGLWRGSVAALPRAALGSGAQIATFGKTKALLVQY
DLVTQPTLNSFSAGLIAGSIMSVAITPPDVITTRLYNQGVDAEGRGLLYR
GWLDCFVKILRSEGVYGMYKGFWANYLRIAPHSTLVLLFFDELVAVRTKY
SNQ*

BS12501.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8323-PA 303 CG8323-PA 1..303 1..303 1556 100 Plus
CG18327-PB 304 CG18327-PB 1..300 1..300 1146 71 Plus
CG18327-PA 304 CG18327-PA 1..300 1..300 1146 71 Plus
CG18324-PB 307 CG18324-PB 1..300 1..300 895 54.3 Plus
CG18324-PA 199 CG18324-PA 1..192 109..300 558 52.6 Plus