BS12504.complete Sequence
1514 bp assembled on 2006-11-01
GenBank Submission: FJ637211
> BS12504.complete
GAAGTTATCAGTCGACATGACGTGCGGAAAATGTCGCGGTCACAAGGAAA
GGAGCGTGAAGTGCCTTTTAGCCGCTTTGGACACAATCAAAGAGCACGCC
TTAATGATGCAACGAGACTCAGAGGAAAGTTCGAGGACCATAGAACAGCT
AAAGATCCACAATGAAAAGCTGCACAAGGCCTTGGACTTGCTGAAGGAGC
GGCAGGCATCCTTGGTCCAGGCGGAGAAGCGCAGGAAGCTGTTGCCCACG
AAGATCAAGGATGACATATCGCCGCAGACACAAAGCCAAAACTCCCTTAA
CATGAACATAGCCATTAGCAACATAGATCTATCCGACGAGGACCAGGAAG
TGGAGGAAGACGAGAGCATTACCGAAACGGAGACCACTGTCCTCAGCCCG
CGCAAACTACGATTGCCAAGTCGAAAGTCGGACATCCGGGATCTGGAGAA
TGTGCAGCCGAGCAATGTTTCTGCGGTGGGAAATAGTTGGACCCGCAAGA
CACCCAAGAATCAGGGAGTCCTTACAAAGCTATCACTCACACACAAGAGC
AACAACTTGAACTTGAAGCAAACTCGCCTTAAATTCGAAGCAAATAGGAC
GAGCACCAGTGAAAAGGAAGTCATAGAGGAGAGTCCCAATTTGAGCACCA
ATCTGAAGAGATCTAGGCCGCCGAGATCTTTAATGCAGAGAACAGACAAC
ACGAGCGTTTCAAACGCAGACGACTCGCTTACCACCACCAGCAATAGCAC
AGTCAAGACCATAAAACCAAGTTTTCAGTTGGACATGGACGAGTTTAAAT
TGGACAGCTCGGAAGATCAGATAATGCCCCCACCGAACACGCCGCCAGGT
TTAAAGATCAGCAACACCTCGGATAGTGTAGTTTTATTGACGCCTGCGAC
CCAGGATATAATCTTTGTGAATGATACACTCGAAGATGTGAGCAAACTGG
GCACCATGGATGTTCTGGCCGAAATTATGAAGGACGATGACGACACGTGC
TCGAGTGCTTTAAGACAGTACGAGAAGGTTATAATTGACCAGCAGAAGCA
AAACCTACCAAATGCCCCAAAAGTTGAGAGCGTCATTCCAATTACCAAAG
TCGTGAAAATGGAACCTATATCCCAGCCAGAAACAGACTTAGGCAACGAA
TCAACAAAACTGCCCGAGGATATTGAAAAGTATCTTATGGATATCAAAGA
AGAGGATAGTAGGCATTCGGAGGAGGAGTTTCCGCGACCGATTTTGATCA
AGGAGGAACCTGAGGCGACGGTCAAAGAACGTTTTAACATTGAGTGCGTC
GAGTGCGAAAAGTTCATCAATTTTATGGGTTCAAATCTGACAGACGAGAA
GATCAAAGATTATTTGGCAAAGTGCCGGCATGAAGACGCTCGCAGTTCAA
CTCCGCCGGGATTCTGGAATCCACACATGGTTTCCTTCGCAGAAGGCGAT
CCACGCAACGAAGTGTTGATAGACACTCGGTTTTGGGACCAGAGATAAAA
GCTTTCTAGACCAT
BS12504.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5872-RA | 1482 | CG5872-PA | 1..1482 | 17..1498 | 7410 | 100 | Plus |
| CG5872-RB | 738 | CG5872-PB | 1..738 | 17..747 | 3550 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5872-RA | 1859 | CG5872-RA | 133..1616 | 17..1500 | 7420 | 100 | Plus |
| CG5872-RB | 1866 | CG5872-RB | 133..1623 | 17..1500 | 7315 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20437252..20437875 | 689..1312 | 3120 | 100 | Plus |
| 3L | 28110227 | 3L | 20436527..20437112 | 105..690 | 2930 | 100 | Plus |
| 3L | 28110227 | 3L | 20437938..20438127 | 1311..1500 | 950 | 100 | Plus |
| 3L | 28110227 | 3L | 20436382..20436469 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:24:56 has no hits.
BS12504.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:12 Download gff for
BS12504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5872-RA | 1..1482 | 17..1498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:48 Download gff for
BS12504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5872-RA | 126..1609 | 17..1500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:26 Download gff for
BS12504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5872-RA | 133..1612 | 17..1496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:13 Download gff for
BS12504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5872-RA | 126..1609 | 17..1500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:57 Download gff for
BS12504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5872-RA | 133..1612 | 17..1496 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:57 Download gff for
BS12504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20436382..20436469 | 17..104 | 100 | -> | Plus |
| 3L | 20436527..20437112 | 105..690 | 100 | -> | Plus |
| 3L | 20437254..20437875 | 691..1312 | 100 | -> | Plus |
| 3L | 20437940..20438123 | 1313..1496 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:26 Download gff for
BS12504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20429482..20429569 | 17..104 | 100 | -> | Plus |
| arm_3L | 20429627..20430212 | 105..690 | 100 | -> | Plus |
| arm_3L | 20430354..20430975 | 691..1312 | 100 | -> | Plus |
| arm_3L | 20431040..20431223 | 1313..1496 | 100 | | Plus |
BS12504.pep Sequence
Translation from 16 to 1497
> BS12504.pep
MTCGKCRGHKERSVKCLLAALDTIKEHALMMQRDSEESSRTIEQLKIHNE
KLHKALDLLKERQASLVQAEKRRKLLPTKIKDDISPQTQSQNSLNMNIAI
SNIDLSDEDQEVEEDESITETETTVLSPRKLRLPSRKSDIRDLENVQPSN
VSAVGNSWTRKTPKNQGVLTKLSLTHKSNNLNLKQTRLKFEANRTSTSEK
EVIEESPNLSTNLKRSRPPRSLMQRTDNTSVSNADDSLTTTSNSTVKTIK
PSFQLDMDEFKLDSSEDQIMPPPNTPPGLKISNTSDSVVLLTPATQDIIF
VNDTLEDVSKLGTMDVLAEIMKDDDDTCSSALRQYEKVIIDQQKQNLPNA
PKVESVIPITKVVKMEPISQPETDLGNESTKLPEDIEKYLMDIKEEDSRH
SEEEFPRPILIKEEPEATVKERFNIECVECEKFINFMGSNLTDEKIKDYL
AKCRHEDARSSTPPGFWNPHMVSFAEGDPRNEVLIDTRFWDQR*
BS12504.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5872-PA | 493 | CG5872-PA | 1..493 | 1..493 | 2521 | 100 | Plus |
| CG5872-PB | 245 | CG5872-PB | 1..228 | 1..228 | 1131 | 99.1 | Plus |
