BS12505.complete Sequence
704 bp assembled on 2006-11-01
GenBank Submission: FJ637212
> BS12505.complete
GAAGTTATCAGTCGACATGGGAGCCCGACAGTCTCAATCCCGCGAGCCCC
GAACCGTTTCGATGGAAAACCCAACTCCTGCCGGCGTTATTGATATATCC
GACGATGTGGTCAAGCGACTGAAGGCGGGAATATCCCAGCAGGCTCGTGA
GCACGCAGCCGCTGCGGAGGAATCGAAACCAGTGCCCAAGCCAACGACGA
AGGCTGCCGCCAAGCCAGCCGCATCCTCGCCAGCTGCTTCTCCTGCTCCG
AAAGTATCCTCCTATCCCGCTGCAGTGCCCATTTACGTCCAGGGAGGAGG
ACACACCATTAGCGCGGCCGATGTGCAGCGCCAGATGAACCAGGAGCTAA
TCAAGAATGACGAGCTGTGGAAGGAGCGCATGGCGAAGCTGGAGGAGAAC
CTCAAGAAGACCAACACCATCCTGGAGAAGGAGTACGCCAATGCTGTAGA
AAATGTGCACAAGCGATTCGTCAGCACCGCGTCGTCGCACAAAGTGCCTC
CCTGCCAGGACCTGAAATCCCAGCTGCTTGCCTGCTACCGCGCGCATCCC
GGGGAGACCTTGAAGTGCATTGAGGAGGTGGCCCAATTCCGACAGTGCAT
CGATCTTCATCGCGTCCAGAAGCTGGATGCGGAACCAGAGTCGTCGAAAG
TGACCTCCAAGGCCACCGTTCCTGCCAAGGCGGCCTAGAAGCTTTCTAGA
CCAT
BS12505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)03670-RA | 672 | CG1715-PA | 1..672 | 17..688 | 3345 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)03670-RA | 940 | CG1715-RA | 122..793 | 17..688 | 3345 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31052763..31053308 | 688..143 | 2730 | 100 | Minus |
3R | 32079331 | 3R | 31053587..31053713 | 143..17 | 620 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:41:58 has no hits.
BS12505.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:13 Download gff for
BS12505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)03670-RA | 1..672 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:50 Download gff for
BS12505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)03670-RA | 119..790 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:59 Download gff for
BS12505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)03670-RA | 122..793 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:14 Download gff for
BS12505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)03670-RA | 119..790 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:32 Download gff for
BS12505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)03670-RA | 122..793 | 17..688 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:32 Download gff for
BS12505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31052763..31053307 | 144..688 | 100 | <- | Minus |
3R | 31053587..31053713 | 17..143 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:59 Download gff for
BS12505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26878485..26879029 | 144..688 | 100 | <- | Minus |
arm_3R | 26879309..26879435 | 17..143 | 99 | | Minus |
BS12505.pep Sequence
Translation from 16 to 687
> BS12505.pep
MGARQSQSREPRTVSMENPTPAGVIDISDDVVKRLKAGISQQAREHAAAA
EESKPVPKPTTKAAAKPAASSPAASPAPKVSSYPAAVPIYVQGGGHTISA
ADVQRQMNQELIKNDELWKERMAKLEENLKKTNTILEKEYANAVENVHKR
FVSTASSHKVPPCQDLKSQLLACYRAHPGETLKCIEEVAQFRQCIDLHRV
QKLDAEPESSKVTSKATVPAKAA*
BS12505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)03670-PA | 223 | CG1715-PA | 1..223 | 1..223 | 1132 | 100 | Plus |