Clone BS12505 Report

Search the DGRC for BS12505

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:125
Well:5
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)03670-RA
Protein status:BS12505.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12505.complete Sequence

704 bp assembled on 2006-11-01

GenBank Submission: FJ637212

> BS12505.complete
GAAGTTATCAGTCGACATGGGAGCCCGACAGTCTCAATCCCGCGAGCCCC
GAACCGTTTCGATGGAAAACCCAACTCCTGCCGGCGTTATTGATATATCC
GACGATGTGGTCAAGCGACTGAAGGCGGGAATATCCCAGCAGGCTCGTGA
GCACGCAGCCGCTGCGGAGGAATCGAAACCAGTGCCCAAGCCAACGACGA
AGGCTGCCGCCAAGCCAGCCGCATCCTCGCCAGCTGCTTCTCCTGCTCCG
AAAGTATCCTCCTATCCCGCTGCAGTGCCCATTTACGTCCAGGGAGGAGG
ACACACCATTAGCGCGGCCGATGTGCAGCGCCAGATGAACCAGGAGCTAA
TCAAGAATGACGAGCTGTGGAAGGAGCGCATGGCGAAGCTGGAGGAGAAC
CTCAAGAAGACCAACACCATCCTGGAGAAGGAGTACGCCAATGCTGTAGA
AAATGTGCACAAGCGATTCGTCAGCACCGCGTCGTCGCACAAAGTGCCTC
CCTGCCAGGACCTGAAATCCCAGCTGCTTGCCTGCTACCGCGCGCATCCC
GGGGAGACCTTGAAGTGCATTGAGGAGGTGGCCCAATTCCGACAGTGCAT
CGATCTTCATCGCGTCCAGAAGCTGGATGCGGAACCAGAGTCGTCGAAAG
TGACCTCCAAGGCCACCGTTCCTGCCAAGGCGGCCTAGAAGCTTTCTAGA
CCAT

BS12505.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)03670-RA 672 CG1715-PA 1..672 17..688 3345 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)03670-RA 940 CG1715-RA 122..793 17..688 3345 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31052763..31053308 688..143 2730 100 Minus
3R 32079331 3R 31053587..31053713 143..17 620 99.2 Minus
Blast to na_te.dros performed on 2014-11-27 10:41:58 has no hits.

BS12505.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:13 Download gff for BS12505.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)03670-RA 1..672 17..688 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:50 Download gff for BS12505.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)03670-RA 119..790 17..688 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:59 Download gff for BS12505.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)03670-RA 122..793 17..688 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:14 Download gff for BS12505.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)03670-RA 119..790 17..688 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:32 Download gff for BS12505.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)03670-RA 122..793 17..688 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:32 Download gff for BS12505.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31052763..31053307 144..688 100 <- Minus
3R 31053587..31053713 17..143 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:59 Download gff for BS12505.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26878485..26879029 144..688 100 <- Minus
arm_3R 26879309..26879435 17..143 99   Minus

BS12505.pep Sequence

Translation from 16 to 687

> BS12505.pep
MGARQSQSREPRTVSMENPTPAGVIDISDDVVKRLKAGISQQAREHAAAA
EESKPVPKPTTKAAAKPAASSPAASPAPKVSSYPAAVPIYVQGGGHTISA
ADVQRQMNQELIKNDELWKERMAKLEENLKKTNTILEKEYANAVENVHKR
FVSTASSHKVPPCQDLKSQLLACYRAHPGETLKCIEEVAQFRQCIDLHRV
QKLDAEPESSKVTSKATVPAKAA*

BS12505.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)03670-PA 223 CG1715-PA 1..223 1..223 1132 100 Plus