BS12536.complete Sequence
404 bp assembled on 2006-11-01
GenBank Submission: FJ637214
> BS12536.complete
GAAGTTATCAGTCGACATGTTCAAACTGATTGCCCTCATCTCTGCCCTGT
GCGCCGTGGCCAATGCCGGAGTAATCTCGCCCTACAGCCATGGATATGGA
CTGGGATACGGCGCCGCCTTGGCTCCGGCTTATGCCGCTCCGGCTGTGAT
CTCGCACGCCCCGATCATCAAGAGCTACGCCGCTCCCATTGTCGCCCACC
CGGTGGCCACCTCCTATGCCAACACCTACAAGGTGGCCACCAAGGCCATT
CCAGTGGTCCATGCCGCTCCTCTGGTCCATGCCGTGCCTGCTCTGCACTC
CACCTCCACCTACCATGGATCCTATGGCGGCTACGGTAGCTACGGTCTGG
GATACGCCGGCTACGGACACGGAGCCTACCTGCACTAAAAGCTTTCTAGA
CCAT
BS12536.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4962-RA | 372 | CG4962-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4962-RA | 774 | CG4962-RA | 65..436 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16295049..16295409 | 388..28 | 1805 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 5581..5623 | 283..244 | 109 | 76.7 | Minus |
BS12536.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:58 Download gff for
BS12536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 1..372 | 17..388 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:27 Download gff for
BS12536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 51..429 | 9..388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:55 Download gff for
BS12536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 70..434 | 22..386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:58 Download gff for
BS12536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 51..429 | 9..388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:06 Download gff for
BS12536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 70..434 | 22..386 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:06 Download gff for
BS12536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16295051..16295411 | 22..386 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:55 Download gff for
BS12536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16288151..16288511 | 22..386 | 98 | | Minus |
BS12536.pep Sequence
Translation from 16 to 387
> BS12536.pep
MFKLIALISALCAVANAGVISPYSHGYGLGYGAALAPAYAAPAVISHAPI
IKSYAAPIVAHPVATSYANTYKVATKAIPVVHAAPLVHAVPALHSTSTYH
GSYGGYGSYGLGYAGYGHGAYLH*
BS12536.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4962-PA | 123 | CG4962-PA | 1..123 | 1..123 | 646 | 100 | Plus |
CG13041-PA | 124 | CG13041-PA | 1..106 | 1..102 | 153 | 34.9 | Plus |
CG13060-PA | 131 | CG13060-PA | 1..99 | 1..95 | 144 | 36.4 | Plus |