BS12548.complete Sequence
971 bp assembled on 2008-08-14
GenBank Submission: FJ638846
> BS12548.complete
GAAGTTATCAGTCGACATGAATGTATCAATTCCGGTGCTATTTGTGGCCC
TCATCTGTCTGGCAGCTGCGTCGGCGTTTCCTCAACTGAGGCAGCGCAAC
GAGAAGCAGGTTCAAACCGGCGATGATGATTTGCCTTCCAAGGGCGCCAC
TATCGAGGAAGTAGTGGTGGAATCAGCCTTGTACATCAAACCGAAGTCTA
ATCCGCAGGTGCGTCGCGTCCGTTCGGTCCTGGATCAAATATCCGGAATC
CAGGCCGCTCACAAGAGGGTGAAGCGTCAGTTTGGGCGACAATTTGGTGG
TCAGTATGCTGGAAATCCCGGCTTCGGTGGCGGATTCGGTGGAGAGCCTG
GTTTTGGAGGTGGATTCGGCGGTAATCAAGGATTTGGAGGCAACCAGGGA
TTCGGAGGTAATCAGGGTTTCGGCGGTAATCAGGAATTCGGCGGTAACCC
AGGATTCGGAGGAAATCCCGGATTCGGCGGTAATCAAGGTGGAAAAGTTC
AGGCAGGTACATCGGCCGGCGCTGGGGGAACCAAAGCGGGTGTTGATGTT
GGTGCCGGACCAGATGGCGGCAATGCCAATGCCAACGTCGAGTTAAATCC
GCTGGGACCACTCGGACCCAGTGGTTACAACCAGGAGCAGGCCGCATCCA
ACGGAGCTGCCCACAGCAACTACAACAATGGACTCAACTCAGGATCCTCG
GCCGCCAGTGGGCAGGCTCAGGGCTTCCAGTCGCAGAGTGCCAATGGATC
ATTCGGTGCCTCCTCCGCAAGCACGGCCACTCAGTCCCAGAACACCAGCC
CCTTTGGATCCAATAATGCGGCAGGTGCTTCGCTGAGTCAGGTTTACCAT
CTTCCCAATGGACAGACAATAAACTTTAGCTCCACGAACAGCTTCGCTAA
TGGAGGAGCCAATCGTGGCAGTAGCCATGGATCGGCAGTTTCTGTCAGCC
GCTAAAAGCTTTCTAGACCAT
BS12548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17032-RB | 939 | CG17032-PB | 1..939 | 17..955 | 4695 | 100 | Plus |
| CG17032-RA | 939 | CG17032-PA | 1..939 | 17..955 | 4695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17032-RB | 1127 | CG17032-RB | 84..1030 | 13..959 | 4720 | 99.9 | Plus |
| CG17032-RA | 1463 | CG17032-RA | 420..1366 | 13..959 | 4720 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15959688..15960512 | 135..959 | 4125 | 100 | Plus |
| 3L | 28110227 | 3L | 15959262..15959383 | 13..134 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:06:00 has no hits.
BS12548.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:46 Download gff for
BS12548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17032-RA | 418..1370 | 9..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:39 Download gff for
BS12548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17032-RA | 424..1360 | 17..953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:07 Download gff for
BS12548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17032-RA | 424..1360 | 17..953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:09 Download gff for
BS12548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17032-RA | 424..1360 | 17..953 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:09 Download gff for
BS12548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15959266..15959383 | 17..134 | 100 | -> | Plus |
| 3L | 15959688..15960506 | 135..953 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:39 Download gff for
BS12548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15952366..15952483 | 17..134 | 100 | -> | Plus |
| arm_3L | 15952788..15953606 | 135..953 | 100 | | Plus |
BS12548.pep Sequence
Translation from 16 to 954
> BS12548.pep
MNVSIPVLFVALICLAAASAFPQLRQRNEKQVQTGDDDLPSKGATIEEVV
VESALYIKPKSNPQVRRVRSVLDQISGIQAAHKRVKRQFGRQFGGQYAGN
PGFGGGFGGEPGFGGGFGGNQGFGGNQGFGGNQGFGGNQEFGGNPGFGGN
PGFGGNQGGKVQAGTSAGAGGTKAGVDVGAGPDGGNANANVELNPLGPLG
PSGYNQEQAASNGAAHSNYNNGLNSGSSAASGQAQGFQSQSANGSFGASS
ASTATQSQNTSPFGSNNAAGASLSQVYHLPNGQTINFSSTNSFANGGANR
GSSHGSAVSVSR*
BS12548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17032-PB | 312 | CG17032-PB | 1..312 | 1..312 | 1629 | 100 | Plus |
| CG17032-PA | 312 | CG17032-PA | 1..312 | 1..312 | 1629 | 100 | Plus |
| CG7296-PB | 161 | CG7296-PB | 36..160 | 95..216 | 279 | 47.6 | Plus |
| CG7296-PA | 161 | CG7296-PA | 36..160 | 95..216 | 279 | 47.6 | Plus |
| CG7296-PB | 161 | CG7296-PB | 47..156 | 90..197 | 260 | 51.8 | Plus |
| CG7296-PA | 161 | CG7296-PA | 47..156 | 90..197 | 260 | 51.8 | Plus |
| CG7296-PB | 161 | CG7296-PB | 19..157 | 88..247 | 251 | 38.1 | Plus |
| CG7296-PA | 161 | CG7296-PA | 19..157 | 88..247 | 251 | 38.1 | Plus |
| CG7299-PC | 177 | CG7299-PC | 54..173 | 93..211 | 219 | 43.9 | Plus |
