BS12554.complete Sequence
587 bp assembled on 2006-11-01
GenBank Submission: FJ637216
> BS12554.complete
GAAGTTATCAGTCGACATGCGTGAGTACAAAATCGTGGTCCTTGGAAGCG
GCGGCGTGGGCAAATCCGCGCTGACAGTCCAGTTTGTCCAGTGCATCTTC
GTGGAGAAGTACGATCCCACCATCGAGGACAGTTACAGGAAGCAGGTGGA
GGTGGACGGACAGCAGTGCATGCTGGAGATCCTGGACACGGCGGGTACGG
AGCAGTTCACGGCCATGCGGGATTTGTACATGAAGAACGGCCAGGGATTC
GTGCTGGTCTACTCGATCACGGCGCAATCGACGTTTAACGATCTGCAGGA
CCTGCGCGAGCAGATACTCCGGGTGAAGGACACGGACGATGTGCCCATGG
TGCTCGTGGGCAACAAGTGCGACCTCGAAGAGGAGCGCGTCGTCGGCAAG
GAGCTGGGCAAGAACCTGGCCACCCAGTTCAACTGCGCCTTCATGGAGAC
CTCAGCCAAAGCCAAAGTGAATGTGAACGATATTTTCTACGACCTGGTCC
GGCAGATCAACAAGAAGTCGCCCGAGAAGAAACAGAAGAAGCCGAAAAAG
TCCCTATGTGTTCTGCTATAAAAGCTTTCTAGACCAT
BS12554.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R-RC | 555 | CG1956-PC | 1..555 | 17..571 | 2775 | 100 | Plus |
R-RB | 555 | CG1956-PB | 1..555 | 17..571 | 2775 | 100 | Plus |
R-RA | 555 | CG1956-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R-RC | 2702 | CG1956-RC | 605..1160 | 16..571 | 2780 | 100 | Plus |
R-RB | 2872 | CG1956-RB | 775..1330 | 16..571 | 2780 | 100 | Plus |
R-RA | 2741 | CG1956-RA | 644..1199 | 16..571 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1860657..1861212 | 571..16 | 2780 | 100 | Minus |
3R | 32079331 | 3R | 9512159..9512282 | 149..26 | 200 | 77.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:21:40 has no hits.
BS12554.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:02 Download gff for
BS12554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:32 Download gff for
BS12554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 632..1199 | 9..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:25 Download gff for
BS12554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 645..1197 | 17..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:02 Download gff for
BS12554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 632..1199 | 9..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:42 Download gff for
BS12554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 645..1197 | 17..569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:42 Download gff for
BS12554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1860659..1861211 | 17..569 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:25 Download gff for
BS12554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1860659..1861211 | 17..569 | 100 | | Minus |
BS12554.pep Sequence
Translation from 16 to 570
> BS12554.pep
MREYKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIEDSYRKQVEVDGQQ
CMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQI
LRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAK
VNVNDIFYDLVRQINKKSPEKKQKKPKKSLCVLL*
BS12554.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R-PC | 184 | CG1956-PC | 1..184 | 1..184 | 939 | 100 | Plus |
R-PB | 184 | CG1956-PB | 1..184 | 1..184 | 939 | 100 | Plus |
R-PA | 184 | CG1956-PA | 1..184 | 1..184 | 939 | 100 | Plus |
Rap2l-PA | 182 | CG3204-PA | 1..182 | 1..184 | 523 | 56 | Plus |
Ras85D-PA | 189 | CG9375-PA | 1..182 | 1..178 | 515 | 54.1 | Plus |