Clone BS12554 Report

Search the DGRC for BS12554

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:125
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptR-RA
Protein status:BS12554.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12554.complete Sequence

587 bp assembled on 2006-11-01

GenBank Submission: FJ637216

> BS12554.complete
GAAGTTATCAGTCGACATGCGTGAGTACAAAATCGTGGTCCTTGGAAGCG
GCGGCGTGGGCAAATCCGCGCTGACAGTCCAGTTTGTCCAGTGCATCTTC
GTGGAGAAGTACGATCCCACCATCGAGGACAGTTACAGGAAGCAGGTGGA
GGTGGACGGACAGCAGTGCATGCTGGAGATCCTGGACACGGCGGGTACGG
AGCAGTTCACGGCCATGCGGGATTTGTACATGAAGAACGGCCAGGGATTC
GTGCTGGTCTACTCGATCACGGCGCAATCGACGTTTAACGATCTGCAGGA
CCTGCGCGAGCAGATACTCCGGGTGAAGGACACGGACGATGTGCCCATGG
TGCTCGTGGGCAACAAGTGCGACCTCGAAGAGGAGCGCGTCGTCGGCAAG
GAGCTGGGCAAGAACCTGGCCACCCAGTTCAACTGCGCCTTCATGGAGAC
CTCAGCCAAAGCCAAAGTGAATGTGAACGATATTTTCTACGACCTGGTCC
GGCAGATCAACAAGAAGTCGCCCGAGAAGAAACAGAAGAAGCCGAAAAAG
TCCCTATGTGTTCTGCTATAAAAGCTTTCTAGACCAT

BS12554.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
R-RC 555 CG1956-PC 1..555 17..571 2775 100 Plus
R-RB 555 CG1956-PB 1..555 17..571 2775 100 Plus
R-RA 555 CG1956-PA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
R-RC 2702 CG1956-RC 605..1160 16..571 2780 100 Plus
R-RB 2872 CG1956-RB 775..1330 16..571 2780 100 Plus
R-RA 2741 CG1956-RA 644..1199 16..571 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1860657..1861212 571..16 2780 100 Minus
3R 32079331 3R 9512159..9512282 149..26 200 77.4 Minus
Blast to na_te.dros performed on 2014-11-26 22:21:40 has no hits.

BS12554.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:02 Download gff for BS12554.complete
Subject Subject Range Query Range Percent Splice Strand
R-RA 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:32 Download gff for BS12554.complete
Subject Subject Range Query Range Percent Splice Strand
R-RA 632..1199 9..577 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:25 Download gff for BS12554.complete
Subject Subject Range Query Range Percent Splice Strand
R-RA 645..1197 17..569 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:02 Download gff for BS12554.complete
Subject Subject Range Query Range Percent Splice Strand
R-RA 632..1199 9..577 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:42 Download gff for BS12554.complete
Subject Subject Range Query Range Percent Splice Strand
R-RA 645..1197 17..569 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:42 Download gff for BS12554.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1860659..1861211 17..569 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:25 Download gff for BS12554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1860659..1861211 17..569 100   Minus

BS12554.pep Sequence

Translation from 16 to 570

> BS12554.pep
MREYKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIEDSYRKQVEVDGQQ
CMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQI
LRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAK
VNVNDIFYDLVRQINKKSPEKKQKKPKKSLCVLL*

BS12554.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
R-PC 184 CG1956-PC 1..184 1..184 939 100 Plus
R-PB 184 CG1956-PB 1..184 1..184 939 100 Plus
R-PA 184 CG1956-PA 1..184 1..184 939 100 Plus
Rap2l-PA 182 CG3204-PA 1..182 1..184 523 56 Plus
Ras85D-PA 189 CG9375-PA 1..182 1..178 515 54.1 Plus