Clone BS12560 Report

Search the DGRC for BS12560

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:125
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG8630-RA
Protein status:BS12560.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12560.complete Sequence

1259 bp assembled on 2006-11-01

GenBank Submission: FJ637218

> BS12560.complete
GAAGTTATCAGTCGACATGTCGCCCAACATAATAGGCAGTACCTTTATAT
TGGCCGAGACGGCCATTGCCGATGGCAACAACAACAAAATGGCTGCCACA
CCAGCTGCTTCCGCCGCCCCTTCAGCAGCCACGCCCAGCCAGAAGGTGGC
CAAGAAAGCGGAGGCCAAGACGCCCGAGAACAAGCCCTACGAACTGGAGA
TCGTCTGGCGCAACGTGGGACTCTTCGTCATCCTCCACTCGATGGCCCTG
TACGGTCTGTACTTGGTGTTCGCCGAGAGTGCCTATTGGGAACTCTTGCC
AGTCTATGCCACCATGTTCCTCGGCGGTCTGGGCATCACGGCCGGAGTGC
ATCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCACTGCGCATC
TTCCTCATGCTGTGCCAGTCACTGGCCTTCCAGAACAGCATCTGGGAGTG
GACCCGTGACCACCGCGTGCATCACAAGTTCACCGACACACACGCCGATC
CCCACAACTCCCGACGAGGCTTCTTCTTCGCTCATATGGGCTGGCTGATG
TGCAAGAAGCACCCCGATGTGACCAGCAAGGGCAAGCAGATCTCCATGGA
GGATATTGAGCAGGATCCCGTCGTTATGTTCCAGAAGAAAATGTACTTTG
TGGTTATGCCCATCTGCTGCTTCGCCCTGCCCATGATCTTCCCCTACTAC
GTGATGGGCAGCTCGCTGCGCGTCTGCTTCTTCACCTGCTCCATGCTGCG
CTTCTGCCTGTCGCTGCACTTCACGTGGCTGGTAAACAGCGCCGCCCACT
TCTACGGCATGAAGCCCTACGATGTCAATGTGAGCGCCATGAACAACAAG
CTGGTATCCACCCTGACCATCGGCGAGGGATGGCACAACTACCACCACGT
CTTCCCCTGGGATTACAAGGCAGCCGAGCTGGGCACCTACAGTTTCAACT
GGACGACGGCCTTTATCGATGTGATGGCTAAGATCGGACAAGCCTATGAC
CTGAAGTTCGTCTCGCAGGAGATGGTCTACAAGCGAGTCCTTCGCACTGG
CGATGGCTCCCACATTGCCGCCCTGCTGGATGCCAACAACAATAGTGCCA
TTCCGACCAGCGAGCTGGTGGCCCACCTGGATCACGAGAAGGAGGAGCAT
GCCATTTGGGGATGGGACGACAAGGATATCAGCGAGGAGGATCGCAAGGG
AGCCAATGTGGTGAACAAGGAATCCGAATGCAAGCTGGATTAGAAGCTTT
CTAGACCAT

BS12560.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8630-RA 1227 CG8630-PA 1..1227 17..1243 6135 100 Plus
CG9747-RB 1386 CG9747-PB 985..1063 863..941 290 91.1 Plus
CG9747-RA 1386 CG9747-PA 985..1063 863..941 290 91.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8630-RA 2173 CG8630-RA 373..1600 17..1244 6140 100 Plus
CG9747-RB 2318 CG9747-RB 1496..1574 863..941 290 91.1 Plus
CG9747-RA 2138 CG9747-RA 1316..1394 863..941 290 91.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13283293..13283640 640..987 1740 100 Plus
3R 32079331 3R 13282746..13283085 300..639 1700 100 Plus
3R 32079331 3R 13282402..13282687 17..302 1430 100 Plus
3R 32079331 3R 13283696..13283954 986..1244 1295 100 Plus
3R 32079331 3R 30186167..30186245 941..863 290 91.1 Minus
3R 32079331 3R 12446133..12446261 458..586 225 78.3 Plus
3R 32079331 3R 30196918..30197004 949..863 225 83.9 Minus
3R 32079331 3R 12446672..12446803 875..1006 210 77.3 Plus
3L 28110227 3L 11024334..11024394 875..935 185 86.9 Plus
Blast to na_te.dros performed on 2014-11-26 16:41:19 has no hits.

BS12560.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:04 Download gff for BS12560.complete
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 1..1227 17..1243 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:35 Download gff for BS12560.complete
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 371..1598 17..1244 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:12 Download gff for BS12560.complete
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 373..1599 17..1243 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:04 Download gff for BS12560.complete
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 371..1598 17..1244 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:08 Download gff for BS12560.complete
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 373..1599 17..1243 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:08 Download gff for BS12560.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13282402..13282687 17..302 100 -> Plus
3R 13282749..13283085 303..639 100 -> Plus
3R 13283293..13283639 640..986 100 -> Plus
3R 13283697..13283953 987..1243 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:12 Download gff for BS12560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9108124..9108409 17..302 100 -> Plus
arm_3R 9108471..9108807 303..639 100 -> Plus
arm_3R 9109015..9109361 640..986 100 -> Plus
arm_3R 9109419..9109675 987..1243 100   Plus

BS12560.pep Sequence

Translation from 16 to 1242

> BS12560.pep
MSPNIIGSTFILAETAIADGNNNKMAATPAASAAPSAATPSQKVAKKAEA
KTPENKPYELEIVWRNVGLFVILHSMALYGLYLVFAESAYWELLPVYATM
FLGGLGITAGVHRLWSHKAYKAKLPLRIFLMLCQSLAFQNSIWEWTRDHR
VHHKFTDTHADPHNSRRGFFFAHMGWLMCKKHPDVTSKGKQISMEDIEQD
PVVMFQKKMYFVVMPICCFALPMIFPYYVMGSSLRVCFFTCSMLRFCLSL
HFTWLVNSAAHFYGMKPYDVNVSAMNNKLVSTLTIGEGWHNYHHVFPWDY
KAAELGTYSFNWTTAFIDVMAKIGQAYDLKFVSQEMVYKRVLRTGDGSHI
AALLDANNNSAIPTSELVAHLDHEKEEHAIWGWDDKDISEEDRKGANVVN
KESECKLD*

BS12560.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8630-PA 408 CG8630-PA 1..408 1..408 2201 100 Plus
Desat1-PD 383 CG5887-PD 59..383 44..404 963 48.5 Plus
Desat1-PB 383 CG5887-PB 59..383 44..404 963 48.5 Plus
Desat1-PE 383 CG5887-PE 59..383 44..404 963 48.5 Plus
Desat1-PC 383 CG5887-PC 59..383 44..404 963 48.5 Plus