BS12572.complete Sequence
1307 bp assembled on 2006-11-01
GenBank Submission: FJ637219
> BS12572.complete
GAAGTTATCAGTCGACATGCTCGGTTCGGTTCTGCGACTATGGATACTCT
TCGGCTGTTTCTACCGCTTCTTGGCTCTGGCCGAGGTCCTGCAGGAGTGC
GACATTCCCAATGAGACGAAGAGGGGAGTTTGCCTGGAGGTCAGCAGGTG
CAAGGCGTATCTACAGGTGCGGAATGCCACCAATTTGCCGGCGGAGAAGG
TTAATTTCCTGAAGAAGGTGCAGTGCGAGGTGGAGCAGCAAGTGTCGGAG
GCGCAGGGTTCGTACGAATCACTGGTTTGCTGCCCGGCGAATGGCCAGGA
TTACCTATTTCCCGTGCTACAATTCTCTAAGTTCGAGTACCGAAGATTTC
TGGATGTTACCGCTCGATTCAAGCGGAAGAAACTCAAGCGGCGCATTCAA
ACGGTGGAGCCAAGTTCGGGATTCAATTTACTCAATGAGTGCGGCAAACA
AGTGACTAATAGGATTTACGGAGGGGAAATCGCCGAACTGGATGAGTTTC
CTTGGCTGGCACTGCTTGTCTACAACTCGAATGACTACGGTTGCAGTGGA
GCCCTAATCGATGATCGTCATATCCTAACAGCTGCCCATTGTGTTCAAGG
CGAGGGAGTTCGTGATCGCCAAGGATTAAAGCATGTGCGTTTGGGCGAAT
TCAACGTGAAAACTGAACCCGACTGCATCGAGGAGCCAAACTATTTGAGC
TGTGCAGACGCCGCTTTGGATATTGCCTACGAAAAGATCCATGTGCATCC
GGAGTACAAGGAGTTCTCGAACTACAAGTACAATGACATTGCCATTATCC
GGCTAAAGCATCCCGTGTCCTTCACTCACTTCGTCATGCCCATCTGTTTG
CCCAACAAATCCGAGCCACTGACATTGGCCGAGGGCCAGATGTTCTCCGT
TTCCGGATGGGGTCGCACGGATTTATTCAACAAGTACTTCATCAACATTC
ATAGTCCCATCAAGCTAAAGCTGCGCATTCCGTACGTCTCCAATGAGAAC
TGCACCAAGATTCTCGAGGGATTCGGAGTGCGATTGGGTCCCAAGCAAAT
CTGTGCCGGCGGAGAGTTCGCGAAGGACACGTGTGCCGGCGACTCCGGTG
GACCTCTGATGTACTTCGATAGACAGCACTCCCGGTGGGTGGCCTACGGC
GTGGTCAGCTACGGATTTACACAGTGCGGTATGGCCGGTAAGCCGGCTGT
TTATACTAACGTGGCCGAATACACGGACTGGATCGACAGTGTTGTGCAGC
AGAGGAAAAAGAGCCAACAGACGCAGGACAAAATGGCTTGAAAGCTTTCT
AGACCAT
BS12572.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9737-RA | 1275 | CG9737-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9737-RA | 1635 | CG9737-RA | 112..1387 | 16..1291 | 6380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30242683..30243201 | 534..16 | 2580 | 99.8 | Minus |
| 3R | 32079331 | 3R | 30241516..30241880 | 1291..927 | 1825 | 100 | Minus |
| 3R | 32079331 | 3R | 30242145..30242443 | 926..628 | 1495 | 100 | Minus |
| 3R | 32079331 | 3R | 30242508..30242604 | 627..531 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:05:09 has no hits.
BS12572.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:05 Download gff for
BS12572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9737-RA | 1..1275 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:37 Download gff for
BS12572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9737-RA | 110..1385 | 16..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:01 Download gff for
BS12572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9737-RA | 113..1386 | 17..1290 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:06 Download gff for
BS12572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9737-RA | 110..1385 | 16..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:39 Download gff for
BS12572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9737-RA | 113..1386 | 17..1290 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:39 Download gff for
BS12572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30241517..30241880 | 927..1290 | 100 | <- | Minus |
| 3R | 30242145..30242443 | 628..926 | 100 | <- | Minus |
| 3R | 30242508..30242604 | 531..627 | 100 | <- | Minus |
| 3R | 30242687..30243200 | 17..530 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:01 Download gff for
BS12572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26067867..26068165 | 628..926 | 100 | <- | Minus |
| arm_3R | 26068230..26068326 | 531..627 | 100 | <- | Minus |
| arm_3R | 26067239..26067602 | 927..1290 | 100 | <- | Minus |
| arm_3R | 26068409..26068922 | 17..530 | 100 | | Minus |
BS12572.pep Sequence
Translation from 16 to 1290
> BS12572.pep
MLGSVLRLWILFGCFYRFLALAEVLQECDIPNETKRGVCLEVSRCKAYLQ
VRNATNLPAEKVNFLKKVQCEVEQQVSEAQGSYESLVCCPANGQDYLFPV
LQFSKFEYRRFLDVTARFKRKKLKRRIQTVEPSSGFNLLNECGKQVTNRI
YGGEIAELDEFPWLALLVYNSNDYGCSGALIDDRHILTAAHCVQGEGVRD
RQGLKHVRLGEFNVKTEPDCIEEPNYLSCADAALDIAYEKIHVHPEYKEF
SNYKYNDIAIIRLKHPVSFTHFVMPICLPNKSEPLTLAEGQMFSVSGWGR
TDLFNKYFINIHSPIKLKLRIPYVSNENCTKILEGFGVRLGPKQICAGGE
FAKDTCAGDSGGPLMYFDRQHSRWVAYGVVSYGFTQCGMAGKPAVYTNVA
EYTDWIDSVVQQRKKSQQTQDKMA*
BS12572.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9737-PA | 424 | CG9737-PA | 1..424 | 1..424 | 2271 | 100 | Plus |
| CG9733-PA | 418 | CG9733-PA | 17..412 | 20..406 | 534 | 33.4 | Plus |
| CG9733-PB | 417 | CG9733-PB | 24..411 | 28..406 | 532 | 33.6 | Plus |
| Sp7-PF | 391 | CG3066-PF | 15..390 | 14..411 | 529 | 33.7 | Plus |
| Sp7-PE | 391 | CG3066-PE | 15..390 | 14..411 | 529 | 33.7 | Plus |
