Clone Sequence Records
BS12576.complete Sequence
2300 bp assembled on 2010-06-25
GenBank Submission: KX801583
> BS12576.complete
GAAGTTATCAGTCGACATGTCCACTTGCAGTTCATCCGAGATAGCGGAGA
AGAAGCGCATTGCGCTGGCCAAATTGCAGGCCAAGAAATCCCAGCTGCTG
GCCAGCGCACCCGCAACCAATGGAAAATCAACAACGTCTGCAACAGGTGC
GACGCAACATGCGAATAATGGAAAATCAAATCCCAATCAACCGCAGGCCA
AATCCCCATTGAATTTCTACCGATCACCGACGGGGGAGCAGAAGAAGATC
AACAGGAGCGGTCCCACGCCCGGTGACAACAAGAGCTCATCCTTTCTGAA
CGCTCTGAAAGCAATCAAACAGACATCCAACCGGGAATTGTCCCGCGGAG
CAGCACATCCTTACCAGCGGCCAAATGGAGGGAACGAAAGAAACAAGCCC
ACTCTTTCACTGAGTTCGGATAAGGAGAAACCGGTGGCTGTGCTACTCGG
AAACTCCATCACGTGTAATCTCTACTTGATCAGCACACATCGGTTTGCTG
CCCAAACCTCAGGATATCACGAACAGCTCGTGACCGTGTTCAAGAACATG
CCCACCAAGTGCTACGATGGCCAGACCCGTATCTGGAGTTTCGATCTGTC
GGACTACCAATCCCTGAAAACTCATGCAGCGGATCTAAAGCCATATGTTC
ACATGAATGGCATTCCGAAGAAGGTGCTGGATCTCTGCGGCCAGCCGCCA
GTAGTTCCGGAAAGAAGTGTTTTAGCTTCCATAGAACCGAAGCTGGCGGA
CCAGCTAATGCCCTTCCAACAGGATGGGGTATGCTTTGCCATAGCCCAAA
AGGGACGCATTATGATCTGTGATGAAATGGGCCTGGGCAAAACCTATCAG
GCCTTGGCCGTAGCCGACTATTTCAAGGATGATTGGCCCTTGCTTGTCTG
CACCACCGCTTCTACGAGAGACAGTTGGGCGAAACACATAATGGATCTAC
TGCCGAAGGTGCCCATCCACTATGTCCAGGTGCTGAACAACAATCAGCTA
TATGTGGGTGAGGCCAAGGTGCTAATCACCAGCTACAATATGATGGAGCG
ACACGAAGATAAGCTGATGCAGCGGAAGTTTGGTTTCATCATCTTCGACG
AGTCGCACACGCTGAAGAACAGCAAGGCCAAGTGCACGACAACGGCCAAA
AGACTCACGGATCAGGCGAAGCGGGTGGTTTTGCTATCCGGCACACCGGC
TCTCTCCCGGCCATTGGAACTTTTTACGCAACTGCAAATGATTGATGGCA
AATTCATGAATTTCATGGAGTTCACTACTCGTTATTGTGATGGAAAGCAG
TCAACTTTTGGTTGGGATGCCAATGGTCAATCGAATTTGGAGGAACTGAA
GGTCATACTTCACCTTAAATATATGCTGAGGCGAACGAAAGTGGAGGTGC
TGCCTCAACTCGCTGAGAAGAACCGTGAGACTGTCGTCCTGGATCCCGCC
CTAGTGTGGACCAATGCGGAGACCAAGGAAACCTTGGATGCGTTTAACAA
AGAGCTTAAAACCGCTAAAGGCAGGGCAACGGAAGAGATCTTACTCCGTT
TCTATGCACGCACTGCCGAAGTGAAAACTCGAGCGGTCTGCGCCTACCTA
AAAACCTTAGTTAAGGAGCAGAAAAAGTTCATTATCTTTGCCCACCATCG
TGTCATGATGGACGCCATTAGCGACTTCCTCAGTGGATTGAAAGTACACT
ACATACGTATTGATGGACAAACGCGTAGCGATCACAGGTCGGATTCTGTG
GACACGTTCCAAAAGAAGAGCAGTTGTAAGGTGGCCCTGCTCTCCCTAAA
AGCCTGCAATTCAGGAATAACGCTAACTGCAGCTGAGATCATAGTGTTCG
CTGAACTGGACTGGAATCCTAGCACTCTTGCCCAGGCGGAGAGCCGTGCC
CATCGCATTGGTCAGACAAAACCGGTGATTTGTCGCTATCTGATTGCTCA
CAATACGGCAGACGATATAATCTGGAACATGCTGAAAAATAAGCAAGAGG
TGCTTAGTAAAGTGGGCATCTTTGCCGAAAATCTTCAGAAAGCAACACAC
ACAGCAGCACCCACTTCATCCCACAAGATCGAGGAGTACTTCTCGCCCTC
CACGTCCACCTCCCTTGAACCGGAAAGGAATAGCATAAAACAATATTTTT
CAACTATTCCAGCTAAAGAGCCGCCTGAGCAAAATAATAATACAGAAATG
ACCAAAGTAAACAAGGCTGAGTCGGATATCGCGGCGTTCTTTAACGATGA
TGATGATGAGGCTTTTTTGGAATTAGATATTTAGAAGCTTTCTAGACCAT
BS12576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Marcal1-RA | 2268 | CG3753-PA | 1..2268 | 17..2284 | 11325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Marcal1-RA | 2411 | CG3753-RA | 74..2343 | 16..2285 | 11335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4955582..4956349 | 16..783 | 3825 | 99.9 | Plus |
| 2L | 23513712 | 2L | 4956407..4956898 | 783..1274 | 2460 | 100 | Plus |
| 2L | 23513712 | 2L | 4957407..4957690 | 1590..1873 | 1420 | 100 | Plus |
| 2L | 23513712 | 2L | 4958008..4958224 | 2069..2285 | 1085 | 100 | Plus |
| 2L | 23513712 | 2L | 4957752..4957946 | 1874..2068 | 975 | 100 | Plus |
| 2L | 23513712 | 2L | 4957177..4957342 | 1425..1590 | 830 | 100 | Plus |
| 2L | 23513712 | 2L | 4956958..4957108 | 1275..1425 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:47:27 has no hits.
BS12576.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:43 Download gff for
BS12576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Marcal1-RA | 65..2332 | 17..2284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:36 Download gff for
BS12576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Marcal1-RA | 75..2342 | 17..2284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:05 Download gff for
BS12576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Marcal1-RA | 75..2342 | 17..2284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:05 Download gff for
BS12576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4955583..4956349 | 17..783 | 99 | -> | Plus |
| 2L | 4956408..4956898 | 784..1274 | 100 | -> | Plus |
| 2L | 4956958..4957108 | 1275..1425 | 100 | -> | Plus |
| 2L | 4957178..4957342 | 1426..1590 | 100 | -> | Plus |
| 2L | 4957408..4957690 | 1591..1873 | 100 | -> | Plus |
| 2L | 4957752..4957946 | 1874..2068 | 100 | -> | Plus |
| 2L | 4958008..4958223 | 2069..2284 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:36 Download gff for
BS12576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4955583..4956349 | 17..783 | 99 | -> | Plus |
| arm_2L | 4956408..4956898 | 784..1274 | 100 | -> | Plus |
| arm_2L | 4956958..4957108 | 1275..1425 | 100 | -> | Plus |
| arm_2L | 4957178..4957342 | 1426..1590 | 100 | -> | Plus |
| arm_2L | 4957408..4957690 | 1591..1873 | 100 | -> | Plus |
| arm_2L | 4957752..4957946 | 1874..2068 | 100 | -> | Plus |
| arm_2L | 4958008..4958223 | 2069..2284 | 100 | | Plus |
BS12576.5prime Sequence
1061 bp (856 high quality bases) assembled on 2010-02-21
> BS12576.5prime
ATGTCCACTTGCAGTTCATCCGAGATAGCGGAGAAGAAGCGCATTGCGCT
GGCCAAATTGCAGGCCAAGAAATCCCAGCTGCTGGCCAGCGCACCCGCAA
CCAATGGAAAATCAACAACGTCTGCAACAGGTGCGACGCAACATGCGAAT
AATGGAAAATCAAATCCCAATCAACCGCAGGCCAAATCCCCATTGAATTT
CTACCGATCACCGACGGGGGAGCAGAAGAAGATCAACAGGAGCGGTCCCA
CGCCCGGTGACAACAAGAGCTCATCCTTTCTGAACGCTCTGAAAGCAATC
AAACAGACATCCAACCGGGAATTGTCCCGCGGAGCAGCACATCCTTACCA
GCGGCCAAATGGAGGGAACGAAAGAAACAAGCCCACTCTTTCACTGAGTT
CGGATAAGGATAGAACCGGTGGCTGTGCTACTCGGAAACTCCATCACGTG
TAATCTCTACTTGATCAGCACACATCGGTTTGCTGCCCAAACCTCAGGAT
ATCACGAACAGCTCGTGACCGTGTTCAAGAACATGCCCACCAAGTGCTAC
GATGGCCAGACCCGTATCTGGAGTTTCGATCTGTCGGACTACCAATCCCT
GAAAACTCATGCAGCGGATCTAAAGCCATATGTTCACATGAATGGCATTC
CGAAGAAGGTGCTGGATCTCTGCGGCCAGCCGCCAGTAGTTCCGGAAAGA
AGTGTTTTAGCTTCCATAGAACCGAAGCTGGCGGACCAGCTAATGCCCTT
CCACAGGAAGGGGTATGCTTTGCCCTAGCCCCAAAGGGACGCATTATGAT
CTGGGATGAAATGGGCCTGGGCAAAACCTATCAAGGCCTGGGCGTAGCCG
ACTATTTCAAGGAATGATGGCCCTTGCTTGTCTGCACCACCGCTTCTACC
AAAGAACGTTTTGGCGAAACACATAATGGATCTACTGCCGAAGGGGCCCT
CCCCTATGTCCAGGGGCTGAACAACAATAGCTATATGGGGGTGAGGCCAA
GGGGGCTATCCCCCGCCTACAAAAATGAAGGGAACGAACAAAAAAAACCT
GATGGCCCGGG
BS12576.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Marcal1-RA | 2411 | CG3753-RA | 75..1077 | 1..1002 | 4570 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4955583..4956349 | 1..767 | 3695 | 99.3 | Plus |
| 2L | 23513712 | 2L | 4956407..4956643 | 767..1002 | 740 | 90.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:32:28 has no hits.
BS12576.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:42:49 Download gff for
BS12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Marcal1-RA | 65..1081 | 1..1016 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 08:54:04 Download gff for
BS12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Marcal1-RA | 75..1091 | 1..1016 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:08 Download gff for
BS12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Marcal1-RA | 75..1091 | 1..1016 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:08 Download gff for
BS12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4955583..4956349 | 1..767 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 08:54:04 Download gff for
BS12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4955583..4956349 | 1..767 | 99 | -> | Plus |
BS12576.pep Sequence
Translation from 16 to 2283
> BS12576.pep
MSTCSSSEIAEKKRIALAKLQAKKSQLLASAPATNGKSTTSATGATQHAN
NGKSNPNQPQAKSPLNFYRSPTGEQKKINRSGPTPGDNKSSSFLNALKAI
KQTSNRELSRGAAHPYQRPNGGNERNKPTLSLSSDKEKPVAVLLGNSITC
NLYLISTHRFAAQTSGYHEQLVTVFKNMPTKCYDGQTRIWSFDLSDYQSL
KTHAADLKPYVHMNGIPKKVLDLCGQPPVVPERSVLASIEPKLADQLMPF
QQDGVCFAIAQKGRIMICDEMGLGKTYQALAVADYFKDDWPLLVCTTAST
RDSWAKHIMDLLPKVPIHYVQVLNNNQLYVGEAKVLITSYNMMERHEDKL
MQRKFGFIIFDESHTLKNSKAKCTTTAKRLTDQAKRVVLLSGTPALSRPL
ELFTQLQMIDGKFMNFMEFTTRYCDGKQSTFGWDANGQSNLEELKVILHL
KYMLRRTKVEVLPQLAEKNRETVVLDPALVWTNAETKETLDAFNKELKTA
KGRATEEILLRFYARTAEVKTRAVCAYLKTLVKEQKKFIIFAHHRVMMDA
ISDFLSGLKVHYIRIDGQTRSDHRSDSVDTFQKKSSCKVALLSLKACNSG
ITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPVICRYLIAHNTADD
IIWNMLKNKQEVLSKVGIFAENLQKATHTAAPTSSHKIEEYFSPSTSTSL
EPERNSIKQYFSTIPAKEPPEQNNNTEMTKVNKAESDIAAFFNDDDDEAF
LELDI*
BS12576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Marcal1-PA | 755 | CG3753-PA | 1..755 | 1..755 | 3901 | 100 | Plus |
| Iswi-PC | 1027 | CG8625-PC | 150..565 | 266..652 | 309 | 25.3 | Plus |
| Iswi-PB | 1027 | CG8625-PB | 150..565 | 266..652 | 309 | 25.3 | Plus |
| Iswi-PA | 1027 | CG8625-PA | 150..565 | 266..652 | 309 | 25.3 | Plus |
| Chd3-PA | 892 | CG9594-PA | 266..727 | 246..659 | 294 | 25.3 | Plus |
