Clone BS12586 Report

Search the DGRC for BS12586

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:125
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG5676-RA
Protein status:BS12586.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12586.complete Sequence

503 bp assembled on 2007-10-17

GenBank Submission: FJ637222

> BS12586.complete
GAAGTTATCAGTCGACATGACTAATTATTCGGAAATTTTTAAGAAAGTTT
TTAACGATATTGGCCAACGTTCAGCATATTCGCAGATGCTTATTGGCGTT
TCATCAGGATGGGTCACAGGATATACGACAATGAAAATAGGCAAATTTGC
TGCCTTTGCAGTTGGCGGCAGCATAATCTTGCTCGAAATCGCCCACCAAG
AAGGACTTATAAAAATAAATTGGTCTAAGTTGGATAAGAGCGTGGATAAG
CTCGCCGATAAAGTGGAAGCCTCGCTGGGTCGTGAGAAGAACTGGAAGGA
TAAGACCGAAAGATATGTCGACAATCAATTAGACAGAGCTGAAAGCCTCC
TAACCCGAAACGGCAAGAAAGTGGCGAAATGGTACACCAAACTGATTGGC
GATGAAGAGGGTCCAAAAGTCAACGATCTGCACATATTTTTGGCATCATT
TTTCGGTGGCGTTGCCCTGGGCATTGCTACTGGATAAAAGCTTTCTAGAC
CAT

BS12586.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5676-RA 471 CG5676-PA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5676-RA 769 CG5676-RA 77..550 17..490 2370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10255078..10255271 304..111 970 100 Minus
2L 23513712 2L 10254829..10255016 490..303 940 100 Minus
2L 23513712 2L 10255720..10255815 112..17 480 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:46:19 has no hits.

BS12586.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:12 Download gff for BS12586.complete
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 1..471 17..487 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:46:07 Download gff for BS12586.complete
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 70..547 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:55 Download gff for BS12586.complete
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 77..545 17..485 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:43 Download gff for BS12586.complete
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 70..538 17..485 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:02 Download gff for BS12586.complete
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 77..545 17..485 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:02 Download gff for BS12586.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10254834..10255014 305..485 100 <- Minus
2L 10255078..10255270 112..304 100 <- Minus
2L 10255721..10255815 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:55 Download gff for BS12586.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10254834..10255014 305..485 100 <- Minus
arm_2L 10255078..10255270 112..304 100 <- Minus
arm_2L 10255721..10255815 17..111 100   Minus

BS12586.pep Sequence

Translation from 16 to 486

> BS12586.pep
MTNYSEIFKKVFNDIGQRSAYSQMLIGVSSGWVTGYTTMKIGKFAAFAVG
GSIILLEIAHQEGLIKINWSKLDKSVDKLADKVEASLGREKNWKDKTERY
VDNQLDRAESLLTRNGKKVAKWYTKLIGDEEGPKVNDLHIFLASFFGGVA
LGIATG*

BS12586.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5676-PA 156 CG5676-PA 1..156 1..156 802 100 Plus
CG12511-PB 131 CG12511-PB 6..67 7..68 139 40.3 Plus