Clone BS12602 Report

Search the DGRC for BS12602

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG14739-RA
Protein status:BS12602.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12602.5prime Sequence

225 bp (192 high quality bases) assembled on 2006-10-13

> BS12602.5prime
GAAGTTATCAGTCGACATGGCCGAGCAATTGCTGGTGAACACGACGTTGC
CGATGGCGGGGCGCCGTCTGGACCGGGATGTTAACCGGCTGTTGGCGTCG
GGCTACCGCACCACCGTGGACGACGACATGACCAACCTGAATGTTTGCCT
CGAGGGTCCACTGGGCAGTGCCTACGAGGGTGGCATTTGGACGGTAAATG
TGACCATGCCGCAAGACTATCCGTT

BS12602.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-PA 621 CG14739-RA 1..209 17..225 1020 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-RA 902 CG14739-RA 183..391 17..225 1030 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12048764..12048972 225..17 1030 99.5 Minus
Blast to na_te.dros performed on 2015-02-08 11:52:59 has no hits.

BS12602.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:23 Download gff for BS12602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14739-PA 1..209 17..225 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:43 Download gff for BS12602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..391 17..225 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:52 Download gff for BS12602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..391 17..225 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:52 Download gff for BS12602.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12048764..12048972 17..225 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:43 Download gff for BS12602.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7874486..7874694 17..225 99   Minus

BS12602.3prime Sequence

651 bp (651 high quality bases) assembled on 2006-10-13

> BS12602.3prime
ATGGTCTAGAAAGCTTCTAGCTTGATCCTGGCAGGGCAATGTGTGCGTTG
TTCCTGTTTCCAACATCGTCATCATCCGAGTCCGTTAGCAGGTCGGATAG
ACTGAGATCCGAGGAGCGTTTCTCGAGGCCCTCCTCCACCAGTTGTCGCG
TCGGAAGGTTGGCGGGCATGGCGTACGTCTTCATGCAAAGGATAACGTGC
TCGCGAAAGAGTTGCTCCGAGTGTTTCATGATGGCGGCGGCCCGGTGATT
CAGTGAGTCGTGCGGATTCGGGTAACGCAGCAGCTGCGGCAGAAAGGTTT
CGAATATGTTGACCAGGTCATAGCTGGATGACCAAGCCTGCTTAAGGACA
TTCATGCAGACCAGGCCCGTGATGAACTCGATGTTTGGGTGCAGGATCTT
GGTGACAAAGCGAACGCGCGGTGCCGTCAACGGATAGTCCTGCGGCATGG
TCACATTTACCGTCCAAATGCCACCCTCGTAGGCACTGCCCAGTGGACCC
TCGAGGCAAACATTCAGGTTGGTCATGTCGTCGTCCACGGTGGTGCGGTA
GCCCGACGCCAACAGCCGGTTAACATCCCGGTCCAGACGGCGCCCCGCCA
TCGGCAACGTCGTGTTCACCAGCAATTGCTCGGCCATGTCGACTGATAAC
T

BS12602.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-PA 621 CG14739-RA 1..621 637..17 3080 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-RA 902 CG14739-RA 183..803 637..17 3090 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12048352..12048972 17..637 3090 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 03:54:10 has no hits.

BS12602.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:23 Download gff for BS12602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14739-PA 1..621 17..637 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:45 Download gff for BS12602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..808 10..637 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:22 Download gff for BS12602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..808 10..637 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:22 Download gff for BS12602.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12048347..12048972 10..637 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:45 Download gff for BS12602.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7874069..7874694 10..637 99   Plus

BS12602.complete Sequence

653 bp assembled on 2006-11-01

GenBank Submission: FJ637223

> BS12602.complete
GAAGTTATCAGTCGACATGGCCGAGCAATTGCTGGTGAACACGACGTTGC
CGATGGCGGGGCGCCGTCTGGACCGGGATGTTAACCGGCTGTTGGCGTCG
GGCTACCGCACCACCGTGGACGACGACATGACCAACCTGAATGTTTGCCT
CGAGGGTCCACTGGGCAGTGCCTACGAGGGTGGCATTTGGACGGTAAATG
TGACCATGCCGCAGGACTATCCGTTGACGGCACCGCGCGTTCGCTTTGTC
ACCAAGATCCTGCACCCAAACATCGAGTTCATCACGGGCCTGGTCTGCAT
GAATGTCCTTAAGCAGGCTTGGTCATCCAGCTATGACCTGGTCAACATAT
TCGAAACCTTTCTGCCGCAGCTGCTGCGTTACCCGAATCCGCACGACTCA
CTGAATCACCGGGCCGCCGCCATCATGAAACACTCGGAGCAACTCTTTCG
CGAGCACGTTATCCTTTGCATGAAGACGTACGCCATGCCCGCCAACCTTC
CGACGCGACAACTGGTGGAGGAGGGCCTCGAGAAACGCTCCTCGGATCTC
AGTCTATCCGACCTGCTAACGGACTCGGATGATGACGATGTTGGAAACAG
GAACAACGCACACATTGCCCTGCCAGGATCAAGCTAGAAGCTTTCTAGAC
CAT

BS12602.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-RA 621 CG14739-PA 1..621 17..637 3090 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-RA 902 CG14739-RA 183..803 17..637 3090 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12048352..12048972 637..17 3090 99.8 Minus
Blast to na_te.dros performed on 2014-11-27 19:55:02 has no hits.

BS12602.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:50 Download gff for BS12602.complete
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 1..621 17..637 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:15 Download gff for BS12602.complete
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..808 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:42 Download gff for BS12602.complete
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..803 17..637 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:50 Download gff for BS12602.complete
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..808 17..644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:42 Download gff for BS12602.complete
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..803 17..637 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:42 Download gff for BS12602.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12048352..12048972 17..637 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:42 Download gff for BS12602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7874074..7874694 17..637 99   Minus

BS12602.pep Sequence

Translation from 16 to 636

> BS12602.pep
MAEQLLVNTTLPMAGRRLDRDVNRLLASGYRTTVDDDMTNLNVCLEGPLG
SAYEGGIWTVNVTMPQDYPLTAPRVRFVTKILHPNIEFITGLVCMNVLKQ
AWSSSYDLVNIFETFLPQLLRYPNPHDSLNHRAAAIMKHSEQLFREHVIL
CMKTYAMPANLPTRQLVEEGLEKRSSDLSLSDLLTDSDDDDVGNRNNAHI
ALPGSS*

BS12602.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-PA 206 CG14739-PA 1..206 1..206 1075 100 Plus
UbcE2H-PB 183 CG2257-PB 4..180 12..190 358 41.7 Plus
UbcE2H-PC 183 CG2257-PC 4..180 12..190 358 41.7 Plus
UbcE2H-PA 183 CG2257-PA 4..180 12..190 358 41.7 Plus
ben-PE 151 CG18319-PE 6..133 16..141 213 36.2 Plus