Clone BS12604 Report

Search the DGRC for BS12604

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptRpL24-like-RA
Protein status:BS12604.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12604.3prime Sequence

606 bp (606 high quality bases) assembled on 2006-10-13

> BS12604.3prime
ATGGTCTAGAAAGCTTTTAGGCTTCTAACATCTCGAGATCCTCGACCCCC
ATTCCCTCCTCCAGTTTCTTCTCGAGTTCGCGTGCATCCACGTAGGTGAT
CTTCTCCTCGGGCAGATCCTCCTCCATGAGGGCGGCCTCCTCTGCCGCCT
CCTGGGCACGTCGTTGCTTCAGCCCTGCGGCTGGGGAGCGAATCAGGGAC
ATGTTGCGCTGCACATCCTTGACGTCCATCTGAATCTCGACCTGGCGACC
CTTGCGCAGTCGCTCCATGACAAAGTGGCTGGTGCGTTTCTCCTTAATCT
CCGTCACCCGCTTGATGGCCTCCAGACCCTTCTGCCAGGTCTCGCGGCTG
TATTTCATGGGCACGTTGCGGCGCTTCTCGAACTCGAAACTGGGATCGAT
GGCCAGCTCCTTGCCGGCGGCCTTGCGGTACGCCTTCGTCCATCCTACCT
TGCGGGGATTCTTCTTGCGCTTAAAGGCCTTGTGACACTTGCCTCGGCAG
AACTTGAAGACCTTGCAGTCATTTCGCACGAATTGCACCCCGTGGCCCGG
GTATATTTTGCTAGAGCAAAAATAGCACGTTTGAATGCGCATGTCGACTG
ATAACT

BS12604.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6764-PA 576 CG6764-RA 1..576 592..17 2880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
RpL24-like-RA 773 CG6764-RA 94..669 592..17 2880 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11430844..11431340 17..513 2485 100 Plus
3R 32079331 3R 11431407..11431489 510..592 415 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:53:13 has no hits.

BS12604.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:24 Download gff for BS12604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6764-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:46 Download gff for BS12604.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL24-like-RA 94..669 17..592 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:54 Download gff for BS12604.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL24-like-RA 94..669 17..592 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:54 Download gff for BS12604.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11430844..11431338 17..511 100 <- Plus
3R 11431409..11431489 512..592 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:46 Download gff for BS12604.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7256566..7257060 17..511 100 <- Plus
arm_3R 7257131..7257211 512..592 100   Plus

BS12604.5prime Sequence

606 bp (606 high quality bases) assembled on 2006-10-13

> BS12604.5prime
GAAGTTATCAGTCGACATGCGCATTCAAACGTGCTATTTTTGCTCTAGCA
AAATATACCCGGGCCACGGGGTGCAATTCGTGCGAAATGACTGCAAGGTC
TTCAAGTTCTGCCGAGGCAAGTGTCACAAGGCCTTTAAGCGCAAGAAGAA
TCCCCGCAAGGTAGGATGGACGAAGGCGTACCGCAAGGCCGCCGGCAAGG
AGCTGGCCATCGATCCCAGTTTCGAGTTCGAGAAGCGCCGCAACGTGCCC
ATGAAATACAGCCGCGAGACCTGGCAGAAGGGTCTGGAGGCCATCAAGCG
GGTGACGGAGATTAAGGAGAAACGCACCAGCCACTTTGTCATGGAGCGAC
TGCGCAAGGGTCGCCAGGTCGAGATTCAGATGGACGTCAAGGATGTGCAG
CGCAACATGTCCCTGATTCGCTCCCCAGCCGCAGGGCTGAAGCAACGACG
TGCCCAGGAGGCGGCAGAGGAGGCCGCCCTCATGGAGGAGGATCTGCCCG
AGGAGAAGATCACCTACGTGGATGCACGCGAACTCGAGAAGAAACTGGAG
GAGGGAATGGGGGTCGAGGATCTCGAGATGTTAGAAGCCTAAAAGCTTTC
TAGACC

BS12604.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6764-PA 576 CG6764-RA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
RpL24-like-RA 773 CG6764-RA 94..669 17..592 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11430844..11431340 592..96 2485 100 Minus
3R 32079331 3R 11431407..11431489 99..17 415 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:53:54 has no hits.

BS12604.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:25 Download gff for BS12604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6764-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:53 Download gff for BS12604.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL24-like-RA 94..669 17..592 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:58 Download gff for BS12604.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL24-like-RA 94..669 17..592 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:58 Download gff for BS12604.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11430844..11431338 98..592 100 <- Minus
3R 11431409..11431489 17..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:53 Download gff for BS12604.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7256566..7257060 98..592 100 <- Minus
arm_3R 7257131..7257211 17..97 100   Minus

BS12604.complete Sequence

608 bp assembled on 2006-11-01

GenBank Submission: FJ637224

> BS12604.complete
GAAGTTATCAGTCGACATGCGCATTCAAACGTGCTATTTTTGCTCTAGCA
AAATATACCCGGGCCACGGGGTGCAATTCGTGCGAAATGACTGCAAGGTC
TTCAAGTTCTGCCGAGGCAAGTGTCACAAGGCCTTTAAGCGCAAGAAGAA
TCCCCGCAAGGTAGGATGGACGAAGGCGTACCGCAAGGCCGCCGGCAAGG
AGCTGGCCATCGATCCCAGTTTCGAGTTCGAGAAGCGCCGCAACGTGCCC
ATGAAATACAGCCGCGAGACCTGGCAGAAGGGTCTGGAGGCCATCAAGCG
GGTGACGGAGATTAAGGAGAAACGCACCAGCCACTTTGTCATGGAGCGAC
TGCGCAAGGGTCGCCAGGTCGAGATTCAGATGGACGTCAAGGATGTGCAG
CGCAACATGTCCCTGATTCGCTCCCCAGCCGCAGGGCTGAAGCAACGACG
TGCCCAGGAGGCGGCAGAGGAGGCCGCCCTCATGGAGGAGGATCTGCCCG
AGGAGAAGATCACCTACGTGGATGCACGCGAACTCGAGAAGAAACTGGAG
GAGGGAATGGGGGTCGAGGATCTCGAGATGTTAGAAGCCTAAAAGCTTTC
TAGACCAT

BS12604.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
RpL24-like-RA 576 CG6764-PA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
RpL24-like-RA 773 CG6764-RA 94..669 17..592 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11430844..11431340 592..96 2485 100 Minus
3R 32079331 3R 11431407..11431489 99..17 415 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:10:38 has no hits.

BS12604.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:40 Download gff for BS12604.complete
Subject Subject Range Query Range Percent Splice Strand
CG6764-RA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:12 Download gff for BS12604.complete
Subject Subject Range Query Range Percent Splice Strand
CG6764-RA 187..762 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:29 Download gff for BS12604.complete
Subject Subject Range Query Range Percent Splice Strand
RpL24-like-RA 94..667 17..590 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:40 Download gff for BS12604.complete
Subject Subject Range Query Range Percent Splice Strand
CG6764-RA 187..762 17..592 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:33 Download gff for BS12604.complete
Subject Subject Range Query Range Percent Splice Strand
RpL24-like-RA 94..667 17..590 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:33 Download gff for BS12604.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11430846..11431338 98..590 100 <- Minus
3R 11431409..11431489 17..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:29 Download gff for BS12604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7256568..7257060 98..590 100 <- Minus
arm_3R 7257131..7257211 17..97 100   Minus

BS12604.pep Sequence

Translation from 16 to 591

> BS12604.pep
MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVG
WTKAYRKAAGKELAIDPSFEFEKRRNVPMKYSRETWQKGLEAIKRVTEIK
EKRTSHFVMERLRKGRQVEIQMDVKDVQRNMSLIRSPAAGLKQRRAQEAA
EEAALMEEDLPEEKITYVDARELEKKLEEGMGVEDLEMLEA*

BS12604.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
RpL24-like-PA 191 CG6764-PA 1..191 1..191 994 100 Plus
RpL24-PC 155 CG9282-PC 1..142 1..151 172 30.5 Plus
RpL24-PB 155 CG9282-PB 1..142 1..151 172 30.5 Plus
RpL24-PA 155 CG9282-PA 1..142 1..151 172 30.5 Plus