Clone Sequence Records
BS12604.3prime Sequence
606 bp (606 high quality bases) assembled on 2006-10-13
> BS12604.3prime
ATGGTCTAGAAAGCTTTTAGGCTTCTAACATCTCGAGATCCTCGACCCCC
ATTCCCTCCTCCAGTTTCTTCTCGAGTTCGCGTGCATCCACGTAGGTGAT
CTTCTCCTCGGGCAGATCCTCCTCCATGAGGGCGGCCTCCTCTGCCGCCT
CCTGGGCACGTCGTTGCTTCAGCCCTGCGGCTGGGGAGCGAATCAGGGAC
ATGTTGCGCTGCACATCCTTGACGTCCATCTGAATCTCGACCTGGCGACC
CTTGCGCAGTCGCTCCATGACAAAGTGGCTGGTGCGTTTCTCCTTAATCT
CCGTCACCCGCTTGATGGCCTCCAGACCCTTCTGCCAGGTCTCGCGGCTG
TATTTCATGGGCACGTTGCGGCGCTTCTCGAACTCGAAACTGGGATCGAT
GGCCAGCTCCTTGCCGGCGGCCTTGCGGTACGCCTTCGTCCATCCTACCT
TGCGGGGATTCTTCTTGCGCTTAAAGGCCTTGTGACACTTGCCTCGGCAG
AACTTGAAGACCTTGCAGTCATTTCGCACGAATTGCACCCCGTGGCCCGG
GTATATTTTGCTAGAGCAAAAATAGCACGTTTGAATGCGCATGTCGACTG
ATAACT
BS12604.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6764-PA | 576 | CG6764-RA | 1..576 | 592..17 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL24-like-RA | 773 | CG6764-RA | 94..669 | 592..17 | 2880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11430844..11431340 | 17..513 | 2485 | 100 | Plus |
3R | 32079331 | 3R | 11431407..11431489 | 510..592 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:53:13 has no hits.
BS12604.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:24 Download gff for
BS12604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6764-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:46 Download gff for
BS12604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-like-RA | 94..669 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:54 Download gff for
BS12604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-like-RA | 94..669 | 17..592 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:54 Download gff for
BS12604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11430844..11431338 | 17..511 | 100 | <- | Plus |
3R | 11431409..11431489 | 512..592 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:46 Download gff for
BS12604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7256566..7257060 | 17..511 | 100 | <- | Plus |
arm_3R | 7257131..7257211 | 512..592 | 100 | | Plus |
BS12604.5prime Sequence
606 bp (606 high quality bases) assembled on 2006-10-13
> BS12604.5prime
GAAGTTATCAGTCGACATGCGCATTCAAACGTGCTATTTTTGCTCTAGCA
AAATATACCCGGGCCACGGGGTGCAATTCGTGCGAAATGACTGCAAGGTC
TTCAAGTTCTGCCGAGGCAAGTGTCACAAGGCCTTTAAGCGCAAGAAGAA
TCCCCGCAAGGTAGGATGGACGAAGGCGTACCGCAAGGCCGCCGGCAAGG
AGCTGGCCATCGATCCCAGTTTCGAGTTCGAGAAGCGCCGCAACGTGCCC
ATGAAATACAGCCGCGAGACCTGGCAGAAGGGTCTGGAGGCCATCAAGCG
GGTGACGGAGATTAAGGAGAAACGCACCAGCCACTTTGTCATGGAGCGAC
TGCGCAAGGGTCGCCAGGTCGAGATTCAGATGGACGTCAAGGATGTGCAG
CGCAACATGTCCCTGATTCGCTCCCCAGCCGCAGGGCTGAAGCAACGACG
TGCCCAGGAGGCGGCAGAGGAGGCCGCCCTCATGGAGGAGGATCTGCCCG
AGGAGAAGATCACCTACGTGGATGCACGCGAACTCGAGAAGAAACTGGAG
GAGGGAATGGGGGTCGAGGATCTCGAGATGTTAGAAGCCTAAAAGCTTTC
TAGACC
BS12604.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6764-PA | 576 | CG6764-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL24-like-RA | 773 | CG6764-RA | 94..669 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11430844..11431340 | 592..96 | 2485 | 100 | Minus |
3R | 32079331 | 3R | 11431407..11431489 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:53:54 has no hits.
BS12604.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:25 Download gff for
BS12604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6764-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:53 Download gff for
BS12604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-like-RA | 94..669 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:58 Download gff for
BS12604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-like-RA | 94..669 | 17..592 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:58 Download gff for
BS12604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11430844..11431338 | 98..592 | 100 | <- | Minus |
3R | 11431409..11431489 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:53 Download gff for
BS12604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7256566..7257060 | 98..592 | 100 | <- | Minus |
arm_3R | 7257131..7257211 | 17..97 | 100 | | Minus |
BS12604.complete Sequence
608 bp assembled on 2006-11-01
GenBank Submission: FJ637224
> BS12604.complete
GAAGTTATCAGTCGACATGCGCATTCAAACGTGCTATTTTTGCTCTAGCA
AAATATACCCGGGCCACGGGGTGCAATTCGTGCGAAATGACTGCAAGGTC
TTCAAGTTCTGCCGAGGCAAGTGTCACAAGGCCTTTAAGCGCAAGAAGAA
TCCCCGCAAGGTAGGATGGACGAAGGCGTACCGCAAGGCCGCCGGCAAGG
AGCTGGCCATCGATCCCAGTTTCGAGTTCGAGAAGCGCCGCAACGTGCCC
ATGAAATACAGCCGCGAGACCTGGCAGAAGGGTCTGGAGGCCATCAAGCG
GGTGACGGAGATTAAGGAGAAACGCACCAGCCACTTTGTCATGGAGCGAC
TGCGCAAGGGTCGCCAGGTCGAGATTCAGATGGACGTCAAGGATGTGCAG
CGCAACATGTCCCTGATTCGCTCCCCAGCCGCAGGGCTGAAGCAACGACG
TGCCCAGGAGGCGGCAGAGGAGGCCGCCCTCATGGAGGAGGATCTGCCCG
AGGAGAAGATCACCTACGTGGATGCACGCGAACTCGAGAAGAAACTGGAG
GAGGGAATGGGGGTCGAGGATCTCGAGATGTTAGAAGCCTAAAAGCTTTC
TAGACCAT
BS12604.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL24-like-RA | 576 | CG6764-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL24-like-RA | 773 | CG6764-RA | 94..669 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11430844..11431340 | 592..96 | 2485 | 100 | Minus |
3R | 32079331 | 3R | 11431407..11431489 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:10:38 has no hits.
BS12604.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:40 Download gff for
BS12604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6764-RA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:12 Download gff for
BS12604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6764-RA | 187..762 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:29 Download gff for
BS12604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-like-RA | 94..667 | 17..590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:40 Download gff for
BS12604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6764-RA | 187..762 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:33 Download gff for
BS12604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-like-RA | 94..667 | 17..590 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:33 Download gff for
BS12604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11430846..11431338 | 98..590 | 100 | <- | Minus |
3R | 11431409..11431489 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:29 Download gff for
BS12604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7256568..7257060 | 98..590 | 100 | <- | Minus |
arm_3R | 7257131..7257211 | 17..97 | 100 | | Minus |
BS12604.pep Sequence
Translation from 16 to 591
> BS12604.pep
MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVG
WTKAYRKAAGKELAIDPSFEFEKRRNVPMKYSRETWQKGLEAIKRVTEIK
EKRTSHFVMERLRKGRQVEIQMDVKDVQRNMSLIRSPAAGLKQRRAQEAA
EEAALMEEDLPEEKITYVDARELEKKLEEGMGVEDLEMLEA*
BS12604.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL24-like-PA | 191 | CG6764-PA | 1..191 | 1..191 | 994 | 100 | Plus |
RpL24-PC | 155 | CG9282-PC | 1..142 | 1..151 | 172 | 30.5 | Plus |
RpL24-PB | 155 | CG9282-PB | 1..142 | 1..151 | 172 | 30.5 | Plus |
RpL24-PA | 155 | CG9282-PA | 1..142 | 1..151 | 172 | 30.5 | Plus |