Clone Sequence Records
BS12607.3prime Sequence
748 bp (658 high quality bases) assembled on 2006-10-13
> BS12607.3prime
ATGGTCTAGAAAGCTAGTAATACATGAAAAGCAAGTCAAAGTTCTTCTTG
CCATCGCCCAAGTAAAGGAAACCATGCTTGTGGGAGTTGATTTTGTGAAA
GAATGTCATGCCCAACCAAAGGCACGACTTGATTATTACCAAACCCTCGT
TCCGTTGCATATTCAGGGCAAAAGCCTGACACAGTGGTATTACGCAGTCA
ATGGTGTCCAGAAAGTCAATAGCATAGTTATAGTCGCTCCTCTTGGCCAA
ATTGACTTTGAGATCATTGCGGGGCAGGCGATAGAGCTGGTAATATGATT
GGTTGTCGATCTGCAAGTCATTCAGTCCACGAAACATCTGGTTGGGTATA
ACACGACCATCGGTCATCTTGTAAAAGGCTCCGCGTGGGCAAATGGCACA
CTCCTCTGTTATAATAAACACAATGGCTGCCAGCCGTTCCTCCTCCTTAA
GCTTGACCACTTCAGGGCGGCTGATACCAGCCACCTGATTGCCTACGATG
TCAAAAGTGGGGTCCAGCTTAACGTAGGTCATCAGGCTGGGATCTCCTAT
AAATGGCTCCCTTGCCAATATAGTCGCCTGAAATATCTTGGGGCTCTGTA
CGAACGGCAGCAACTGCCATTGGAACTGGTCCAGACTGTAGAAATACTTG
CGATCCTTGAGACAGTCATTAATGTAGCCAAAGGCAATGTAGTAATCGTT
CTTGGTGGCCGTAATGCGACCCCAAAGATACTTGCCCGTAAAACGATT
BS12607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-PA | 846 | CG31803-RA | 115..845 | 748..18 | 3605 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-RA | 929 | CG31803-RA | 161..891 | 748..18 | 3625 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17411687..17412184 | 18..515 | 2490 | 100 | Plus |
| 2L | 23513712 | 2L | 17412239..17412473 | 514..748 | 1145 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:11:21 has no hits.
BS12607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:26 Download gff for
BS12607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-PA | 115..846 | 17..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:22 Download gff for
BS12607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 161..899 | 8..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:07 Download gff for
BS12607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 161..899 | 8..748 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:07 Download gff for
BS12607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17411679..17412183 | 8..514 | 99 | <- | Plus |
| 2L | 17412240..17412473 | 515..748 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:22 Download gff for
BS12607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17411679..17412183 | 8..514 | 99 | <- | Plus |
| arm_2L | 17412240..17412473 | 515..748 | 99 | | Plus |
BS12607.5prime Sequence
806 bp (699 high quality bases) assembled on 2006-10-13
> BS12607.5prime
GAAGTTATCAGTCGACATGAATTTGGAGTTCTTCACCGAGGGCCTCGACT
GCCTAATGTACTGCGGCATGAAGCTGTCGCCGGAGCAGCGCATCTTGATT
GAAAACTCGCTGATCGCTTTACAAAATGACAATCGTTTTACGGGCATGTA
TCTTTGGGGTCGCATTACGGCCACCAAGAACGATTACTACATTGCCTTTG
GCTACACTAATGACTGTCTCAAGGATCGCAAGTATTTCTACAGTCTGGAC
CAGTTCCAATGGCAGTTGCTGCCGTTCGTACAGAGCCCCAAGATATTTCA
GGCGACTATATTGGCAAGGGAGCCATTTATAGGAGATCCCAGCCTGATGA
CCTACGTTAAGCTGGACCCCACTTTTGACATCGTAGGCAATCAGGTGGCT
GGTATCAGCCGCCCTGAAGTGGTCAAGCTTAAGGAGGAGGAACGGCTGGC
AGCCATTGTGTTTATTATAACAGAGGAGTGTGCCATTTGCCCACGCGGAG
CCTTTTACAAGATGACCGATGGTCGTGTTATACCCAACCAGATGTTTCGT
GGACTGAATGACTTGCAGATCGACAACCAATCATATTACCAGCTCTATCG
CCTGCCCCGCAATGATCTCAAAGTCAATTTGGCCAAGAGGAGCGACTATA
ACTATGCTATTGACTTTCTGGACACCATTGACTGCGTAATACCACTGTGT
CAGGCTTTTGCCCCTGAATATGCAACGGAACGAGGGTTTGGTATAAATCA
AGTCGTGCCTTTGGGTGGGCATGACATTCTTTCACAAAATCAACTCCCAC
AAGCAT
BS12607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-PA | 846 | CG31803-RA | 1..789 | 17..806 | 3835 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:32:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-RA | 929 | CG31803-RA | 42..835 | 12..806 | 3890 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17411743..17412184 | 806..364 | 2120 | 99.1 | Minus |
| 2L | 23513712 | 2L | 17412239..17412592 | 365..12 | 1755 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:32:52 has no hits.
BS12607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:26 Download gff for
BS12607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-PA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:37:56 Download gff for
BS12607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 33..835 | 2..806 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:06 Download gff for
BS12607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 33..835 | 2..806 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:06 Download gff for
BS12607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17411743..17412183 | 365..806 | 99 | <- | Minus |
| 2L | 17412240..17412601 | 2..364 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:37:56 Download gff for
BS12607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17411743..17412183 | 365..806 | 99 | <- | Minus |
| arm_2L | 17412240..17412601 | 2..364 | 98 | | Minus |
BS12607.complete Sequence
878 bp assembled on 2008-08-15
GenBank Submission: FJ637225
> BS12607.complete
GAAGTTATCAGTCGACATGAATTTGGAGTTCTTCACCGAGGGCCTCGACT
GCCTAATGTACTGCGGCATGAAGCTGTCGCCGGAGCAGCGCATCTTGATT
GAAAACTCGCTGATCGCTTTACAAAATGACAATCGTTTTACGGGCATGTA
TCTTTGGGGTCGCATTACGGCCACCAAGAACGATTACTACATTGCCTTTG
GCTACACTAATGACTGTCTCAAGGATCGCAAGTATTTCTACAGTCTGGAC
CAGTTCCAATGGCAGTTGCTGCCGTTCGTACAGAGCCCCAAGATATTTCA
GGCGACTATATTGGCAAGGGAGCCATTTATAGGAGATCCCAGCCTGATGA
CCTACGTTAAGCTGGACCCCACTTTTGACATCGTAGGCAATCAGGTGGCT
GGTATCAGCCGCCCTGAAGTGGTCAAGCTTAAGGAGGAGGAACGGCTGGC
AGCCATTGTGTTTATTATAACAGAGGAGTGTGCCATTTGCCCACGCGGAG
CCTTTTACAAGATGACCGATGGTCGTGTTATACCCAACCAGATGTTTCGT
GGACTGAATGACTTGCAGATCGACAACCAATCATATTACCAGCTCTATCG
CCTGCCCCGCAATGATCTCAAAGTCAATTTGGCCAAGAGGAGCGACTATA
ACTATGCTATTGACTTTCTGGACACCATTGACTGCGTAATACCACTGTGT
CAGGCTTTTGCCCTGAATATGCAACGGAACGAGGGTTTGGTAATAATCAA
GTCGTGCCTTTGGTTGGGCATGACATTCTTTCACAAAATCAACTCCCACA
AGCATGGTTTCCTTTACTTGGGCGATGGCAAGAAGAACTTTGACTTGCTT
TTCATGTATTACTAGCTTTCTAGACCAT
BS12607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-RA | 846 | CG31803-PA | 1..845 | 17..861 | 4225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-RA | 929 | CG31803-RA | 42..891 | 12..861 | 4235 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17411687..17412184 | 861..364 | 2490 | 100 | Minus |
| 2L | 23513712 | 2L | 17412239..17412592 | 365..12 | 1755 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:11:51 has no hits.
BS12607.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:58 Download gff for
BS12607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 33..899 | 2..871 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:52 Download gff for
BS12607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 47..891 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:03 Download gff for
BS12607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 47..891 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:09 Download gff for
BS12607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 47..891 | 17..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:09 Download gff for
BS12607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17411686..17412183 | 365..862 | 99 | <- | Minus |
| 2L | 17412240..17412587 | 17..364 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:52 Download gff for
BS12607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17411686..17412183 | 365..862 | 99 | <- | Minus |
| arm_2L | 17412240..17412587 | 17..364 | 100 | | Minus |
BS12607.pep Sequence
Translation from 16 to 864
> BS12607.pep
MNLEFFTEGLDCLMYCGMKLSPEQRILIENSLIALQNDNRFTGMYLWGRI
TATKNDYYIAFGYTNDCLKDRKYFYSLDQFQWQLLPFVQSPKIFQATILA
REPFIGDPSLMTYVKLDPTFDIVGNQVAGISRPEVVKLKEEERLAAIVFI
ITEECAICPRGAFYKMTDGRVIPNQMFRGLNDLQIDNQSYYQLYRLPRND
LKVNLAKRSDYNYAIDFLDTIDCVIPLCQAFALNMQRNEGLVIIKSCLWL
GMTFFHKINSHKHGFLYLGDGKKNFDLLFMYY*
BS12607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-PA | 281 | CG31803-PA | 1..281 | 1..281 | 1500 | 100 | Plus |
