Clone BS12608 Report

Search the DGRC for BS12608

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptB52-RA
Protein status:BS12608.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12608.3prime Sequence

810 bp (753 high quality bases) assembled on 2006-10-13

> BS12608.3prime
ATGGTCTAGAAAGCTTCTAATCGTCCATGCTCTCGTTATTGCGGTCCGGT
GAGGCGTTTCCATTTTTGGGCGAGGCCGAACGGGAGCGTGAGCGCGAACG
CGACTTGTTTTCAGCCGATGCGGATCGATCGCGTGAACGGGAGTCGCGGT
GGATGGACTTGGAACGTGAGCGGGAACGGGACTCGCGCTTCGAGACGGAC
CGCGATCGGGAACGGGAGTCACGCTCACGTTTGGGCGAACGGGAGCGGGT
GCGGGAGTGGGACTTTGACTTGGACTTGGACACGTCACGCGATTTGTTGG
ATCGCGAGCGGGAGCGAGAACGAGACTTGACTGGCGACTTGGACTTGGAG
CGTCCGCCACGAGATTTGGAGCGGCTGCGAGACTTGGAGCGCGAGTGCGA
CGAGCGGCGAGAGCGAGAACGCCTGCGGGATCGGGAGCGCGATCGGGAGC
TGGACGAACGGGAGCGTCCACGTCCGCTGCCGCCGCCACCACCGCTGCGT
CCTCCGCGACGATCCTCGACCAAGTGGATCCGCCTGCCGTTTAGCTCGGT
GTCATCCAACTTCTCAATGGCCGTCTTCATGTCCGACAACGAGGCGAACT
CAACCACGCCCTCATTGCGACGCTGCTTGTGGGCATCGGCATAGGTGACC
TCGCCAGCCTGGCGCATGTAATCCTTGAGATCCTGCCAGCTAACGCGGCT
AGACAAATTTCTCACAATCAGTCGGTACTCAGTGCGCAACGGTGGGCCAT
AACGAGAGGATGATTTTTCGTTGTAACGACCGCCCCCCGCCCCCCCGCCG
ACCACCATAT

BS12608.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10851-PA 1053 B52-RA 361..1053 709..17 3465 100 Minus
CG10851-PC 1053 B52-RC 361..1053 709..17 3465 100 Minus
CG10851-PE 1041 B52-RE 376..1041 682..17 3330 100 Minus
CG10851-PG 651 B52-RG 1..651 667..17 3255 100 Minus
CG10851-PH 651 B52-RH 1..651 667..17 3255 100 Minus
CG10851-PB 990 B52-RB 376..954 709..131 2895 100 Minus
CG10851-PA 1053 B52-RA 283..357 787..713 375 100 Minus
CG10851-PC 1053 B52-RC 283..357 787..713 375 100 Minus
CG10851-PE 1041 B52-RE 283..357 787..713 375 100 Minus
CG10851-PF 444 B52-RF 283..357 787..713 375 100 Minus
CG10851-PD 408 B52-RD 283..357 787..713 375 100 Minus
CG10851-PB 990 B52-RB 321..372 764..713 260 100 Minus
CG10851-PF 444 B52-RF 361..388 709..682 140 100 Minus
CG10851-PA 1053 B52-RA 261..287 810..784 135 100 Minus
CG10851-PC 1053 B52-RC 261..287 810..784 135 100 Minus
CG10851-PE 1041 B52-RE 261..287 810..784 135 100 Minus
CG10851-PB 990 B52-RB 261..287 810..784 135 100 Minus
CG10851-PF 444 B52-RF 261..287 810..784 135 100 Minus
CG10851-PD 408 B52-RD 261..287 810..784 135 100 Minus
CG10851-PD 408 B52-RD 361..387 709..683 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
B52-RN 1725 CG10851-RN 575..1368 810..16 3905 99.6 Minus
B52-RC 1557 CG10851-RC 407..1200 810..16 3905 99.6 Minus
B52-RA 1565 CG10851-RA 415..1208 810..16 3905 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13665589..13665901 609..297 1565 100 Minus
3R 32079331 3R 13666084..13666248 296..132 825 100 Minus
3R 32079331 3R 13666418..13666534 132..16 585 100 Minus
3R 32079331 3R 13665449..13665526 686..609 390 100 Minus
3R 32079331 3R 13662970..13663052 764..682 370 96.4 Minus
Blast to na_te.dros performed on 2015-02-10 16:06:42 has no hits.

BS12608.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:27 Download gff for BS12608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10851-PC 261..1053 17..810 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:40 Download gff for BS12608.3prime
Subject Subject Range Query Range Percent Splice Strand
B52-RA 415..1210 11..810 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:58 Download gff for BS12608.3prime
Subject Subject Range Query Range Percent Splice Strand
B52-RA 415..1210 11..810 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:58 Download gff for BS12608.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13666419..13666536 11..131 97   Minus
3R 13665590..13665901 297..608 100 -> Minus
3R 13666084..13666248 132..296 100 -> Minus
3R 13662360..13662404 765..810 97 -> Minus
3R 13662970..13663051 683..764 97 -> Minus
3R 13665453..13665526 609..682 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:40 Download gff for BS12608.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9488082..9488126 765..810 97 -> Minus
arm_3R 9488692..9488773 683..764 97 -> Minus
arm_3R 9491175..9491248 609..682 100 -> Minus
arm_3R 9491312..9491623 297..608 100 -> Minus
arm_3R 9491806..9491970 132..296 100 -> Minus
arm_3R 9492141..9492258 11..131 97   Minus

BS12608.5prime Sequence

815 bp (804 high quality bases) assembled on 2006-10-13

> BS12608.5prime
GAAGTTATCAGTCGACATGGTGGGATCTCGAGTGTATGTGGGCGGTCTGC
CCTACGGAGTGCGCGAGCGCGATTTGGAGCGCTTTTTCAAAGGCTACGGC
CGCACACGCGACATCCTCATCAAAAATGGCTACGGCTTTGTGGAATTCGA
AGACTATCGTGATGCCGACGATGCCGTCTATGAACTGAATGGCAAAGAGC
TGCTTGGCGAACGTGTGGTTGTTGAACCCGCCAGGGGTACCGCTCGTGGC
AGCAACCGCGACCGCTACGACGATCGATATGGTGGTCGGCGGGGGGGCGG
GGGCGGTCGTTACAACGAAAAATCATCCTCTCGTTATGGCCCACCGTTGC
GCACTGAGTACCGACTGATTGTGGAGAATTTGTCTAGCCGCGTTAGCTGG
CAGGATCTCAAGGATTACATGCGCCAGGCTGGCGAGGTCACCTATGCCGA
TGCCCACAAGCAGCGTCGCAATGAGGGCGTGGTTGAGTTCGCCTCGTTGT
CGGACATGAAGACGGCCATTGAGAAGTTGGATGACACCGAGCTAAACGGC
AGGCGGATCCACTTGGTCGAGGATCGTCGCGGAGGACGCAGCGGTGGTGG
CGGCGGCAGCGGACGTGGACGCTCCCGTTCGTCCAGCTCCCGATCGCGCT
CCCGATCCCGCAGGCGTTCTCGCTCTCGCCGCTCGTCGCACTCGCGCTCC
AAGTCTCGCAGCCGCTCCAAATCTCGTGGCGGACGCTCCAAGTCAAAGTC
GCCAGTCAAGTCTCGTTCTCGCTCCCGCTCGCGATCCAACAAATCGCGTG
ACGTGTCCAAGTCCA

BS12608.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10851-PA 1053 B52-RA 1..799 17..815 3970 99.8 Plus
CG10851-PC 1053 B52-RC 1..799 17..815 3970 99.8 Plus
CG10851-PB 990 B52-RB 321..814 322..815 2445 99.7 Plus
CG10851-PE 1041 B52-RE 376..787 404..815 2035 99.7 Plus
CG10851-PG 651 B52-RG 1..397 419..815 1960 99.7 Plus
CG10851-PH 651 B52-RH 1..397 419..815 1960 99.7 Plus
CG10851-PF 444 B52-RF 1..388 17..404 1940 100 Plus
CG10851-PD 408 B52-RD 1..387 17..403 1935 100 Plus
CG10851-PE 1041 B52-RE 1..376 17..392 1880 100 Plus
CG10851-PB 990 B52-RB 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
B52-RN 1725 CG10851-RN 314..1113 16..815 3985 99.9 Plus
B52-RC 1557 CG10851-RC 146..945 16..815 3985 99.9 Plus
B52-RA 1565 CG10851-RA 154..953 16..815 3985 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13665589..13665901 477..789 1550 99.7 Plus
3R 32079331 3R 13661733..13661860 16..143 640 100 Plus
3R 32079331 3R 13662296..13662404 213..321 545 100 Plus
3R 32079331 3R 13662970..13663052 322..404 415 100 Plus
3R 32079331 3R 13665449..13665526 400..477 390 100 Plus
3R 32079331 3R 13662160..13662231 142..213 360 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:21:06 has no hits.

BS12608.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:27 Download gff for BS12608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10851-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:45 Download gff for BS12608.5prime
Subject Subject Range Query Range Percent Splice Strand
B52-RA 149..952 11..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:44 Download gff for BS12608.5prime
Subject Subject Range Query Range Percent Splice Strand
B52-RA 149..952 11..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:44 Download gff for BS12608.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13666084..13666108 790..814 100   Plus
3R 13661728..13661859 11..142 97 -> Plus
3R 13662161..13662231 143..213 100 -> Plus
3R 13662297..13662404 214..321 100 -> Plus
3R 13662970..13663051 322..403 100 -> Plus
3R 13665453..13665526 404..477 100 -> Plus
3R 13665590..13665901 478..789 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:45 Download gff for BS12608.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9487450..9487581 11..142 97 -> Plus
arm_3R 9487883..9487953 143..213 100 -> Plus
arm_3R 9488019..9488126 214..321 100 -> Plus
arm_3R 9488692..9488773 322..403 100 -> Plus
arm_3R 9491175..9491248 404..477 100 -> Plus
arm_3R 9491312..9491623 478..789 99 -> Plus
arm_3R 9491806..9491830 790..814 100   Plus

BS12608.complete Sequence

1085 bp assembled on 2006-11-01

GenBank Submission: FJ637226

> BS12608.complete
GAAGTTATCAGTCGACATGGTGGGATCTCGAGTGTATGTGGGCGGTCTGC
CCTACGGAGTGCGCGAGCGCGATTTGGAGCGCTTTTTCAAAGGCTACGGC
CGCACACGCGACATCCTCATCAAAAATGGCTACGGCTTTGTGGAATTCGA
AGACTATCGTGATGCCGACGATGCCGTCTATGAACTGAATGGCAAAGAGC
TGCTTGGCGAACGTGTGGTTGTTGAACCCGCCAGGGGTACCGCTCGTGGC
AGCAACCGCGACCGCTACGACGATCGATATGGTGGTCGGCGGGGGGGCGG
GGGCGGTCGTTACAACGAAAAATCATCCTCTCGTTATGGCCCACCGTTGC
GCACTGAGTACCGACTGATTGTGGAGAATTTGTCTAGCCGCGTTAGCTGG
CAGGATCTCAAGGATTACATGCGCCAGGCTGGCGAGGTCACCTATGCCGA
TGCCCACAAGCAGCGTCGCAATGAGGGCGTGGTTGAGTTCGCCTCGTTGT
CGGACATGAAGACGGCCATTGAGAAGTTGGATGACACCGAGCTAAACGGC
AGGCGGATCCACTTGGTCGAGGATCGTCGCGGAGGACGCAGCGGTGGTGG
CGGCGGCAGCGGACGTGGACGCTCCCGTTCGTCCAGCTCCCGATCGCGCT
CCCGATCCCGCAGGCGTTCTCGCTCTCGCCGCTCGTCGCACTCGCGCTCC
AAGTCTCGCAGCCGCTCCAAATCTCGTGGCGGACGCTCCAAGTCCAAGTC
GCCAGTCAAGTCTCGTTCTCGCTCCCGCTCGCGATCCAACAAATCGCGTG
ACGTGTCCAAGTCCAAGTCAAAGTCCCACTCCCGCACCCGCTCCCGTTCG
CCCAAACGTGAGCGTGACTCCCGTTCCCGATCGCGGTCCGTCTCGAAGCG
CGAGTCCCGTTCCCGCTCACGTTCCAAGTCCATCCACCGCGACTCCCGTT
CACGCGATCGATCCGCATCGGCTGAAAACAAGTCGCGTTCGCGCTCACGC
TCCCGTTCGGCCTCGCCCAAAAATGGAAACGCCTCACCGGACCGCAATAA
CGAGAGCATGGACGATTAGAAGCTTTCTAGACCAT

BS12608.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
B52-RN 1053 CG10851-PN 1..1053 17..1069 5265 100 Plus
B52-RC 1053 CG10851-PC 1..1053 17..1069 5265 100 Plus
B52-RA 1053 CG10851-PA 1..1053 17..1069 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
B52-RN 1725 CG10851-RN 314..1368 16..1070 5275 100 Plus
B52-RC 1557 CG10851-RC 146..1200 16..1070 5275 100 Plus
B52-RA 1565 CG10851-RA 154..1208 16..1070 5275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13665589..13665901 477..789 1565 100 Plus
3R 32079331 3R 13666084..13666248 790..954 825 100 Plus
3R 32079331 3R 13661733..13661860 16..143 640 100 Plus
3R 32079331 3R 13666418..13666534 954..1070 585 100 Plus
3R 32079331 3R 13662296..13662404 213..321 545 100 Plus
3R 32079331 3R 13662970..13663052 322..404 415 100 Plus
3R 32079331 3R 13665449..13665526 400..477 390 100 Plus
3R 32079331 3R 13662160..13662231 142..213 360 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:12:32 has no hits.

BS12608.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:51 Download gff for BS12608.complete
Subject Subject Range Query Range Percent Splice Strand
B52-RC 1..1053 17..1069 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:17 Download gff for BS12608.complete
Subject Subject Range Query Range Percent Splice Strand
B52-RH 160..552 11..403 99 -> Plus
B52-RH 2954..3622 404..1075 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:53 Download gff for BS12608.complete
Subject Subject Range Query Range Percent Splice Strand
B52-RA 155..1207 17..1069 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:51 Download gff for BS12608.complete
Subject Subject Range Query Range Percent Splice Strand
B52-RH 160..552 11..403 99 -> Plus
B52-RH 2954..3622 404..1075 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:12 Download gff for BS12608.complete
Subject Subject Range Query Range Percent Splice Strand
B52-RA 155..1207 17..1069 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:12 Download gff for BS12608.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13666419..13666533 955..1069 100   Plus
3R 13661734..13661859 17..142 100 -> Plus
3R 13662161..13662231 143..213 100 -> Plus
3R 13662297..13662404 214..321 100 -> Plus
3R 13662970..13663051 322..403 100 -> Plus
3R 13665453..13665526 404..477 100 -> Plus
3R 13665590..13665901 478..789 100 -> Plus
3R 13666084..13666248 790..954 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:53 Download gff for BS12608.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9487456..9487581 17..142 100 -> Plus
arm_3R 9487883..9487953 143..213 100 -> Plus
arm_3R 9488019..9488126 214..321 100 -> Plus
arm_3R 9488692..9488773 322..403 100 -> Plus
arm_3R 9491175..9491248 404..477 100 -> Plus
arm_3R 9491312..9491623 478..789 100 -> Plus
arm_3R 9491806..9491970 790..954 100 -> Plus
arm_3R 9492141..9492255 955..1069 100   Plus

BS12608.pep Sequence

Translation from 16 to 1068

> BS12608.pep
MVGSRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDA
DDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYN
EKSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQR
RNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDRRGGRSGGGGGSGR
GRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSR
SRSRSRSNKSRDVSKSKSKSHSRTRSRSPKRERDSRSRSRSVSKRESRSR
SRSKSIHRDSRSRDRSASAENKSRSRSRSRSASPKNGNASPDRNNESMDD
*

BS12608.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
B52-PN 350 CG10851-PN 1..350 1..350 1770 100 Plus
B52-PC 350 CG10851-PC 1..350 1..350 1770 100 Plus
B52-PA 350 CG10851-PA 1..350 1..350 1770 100 Plus
B52-PO 355 CG10851-PO 1..355 1..350 1754 98.6 Plus
B52-PM 355 CG10851-PM 1..355 1..350 1754 98.6 Plus