Clone Sequence Records
BS12608.3prime Sequence
810 bp (753 high quality bases) assembled on 2006-10-13
> BS12608.3prime
ATGGTCTAGAAAGCTTCTAATCGTCCATGCTCTCGTTATTGCGGTCCGGT
GAGGCGTTTCCATTTTTGGGCGAGGCCGAACGGGAGCGTGAGCGCGAACG
CGACTTGTTTTCAGCCGATGCGGATCGATCGCGTGAACGGGAGTCGCGGT
GGATGGACTTGGAACGTGAGCGGGAACGGGACTCGCGCTTCGAGACGGAC
CGCGATCGGGAACGGGAGTCACGCTCACGTTTGGGCGAACGGGAGCGGGT
GCGGGAGTGGGACTTTGACTTGGACTTGGACACGTCACGCGATTTGTTGG
ATCGCGAGCGGGAGCGAGAACGAGACTTGACTGGCGACTTGGACTTGGAG
CGTCCGCCACGAGATTTGGAGCGGCTGCGAGACTTGGAGCGCGAGTGCGA
CGAGCGGCGAGAGCGAGAACGCCTGCGGGATCGGGAGCGCGATCGGGAGC
TGGACGAACGGGAGCGTCCACGTCCGCTGCCGCCGCCACCACCGCTGCGT
CCTCCGCGACGATCCTCGACCAAGTGGATCCGCCTGCCGTTTAGCTCGGT
GTCATCCAACTTCTCAATGGCCGTCTTCATGTCCGACAACGAGGCGAACT
CAACCACGCCCTCATTGCGACGCTGCTTGTGGGCATCGGCATAGGTGACC
TCGCCAGCCTGGCGCATGTAATCCTTGAGATCCTGCCAGCTAACGCGGCT
AGACAAATTTCTCACAATCAGTCGGTACTCAGTGCGCAACGGTGGGCCAT
AACGAGAGGATGATTTTTCGTTGTAACGACCGCCCCCCGCCCCCCCGCCG
ACCACCATAT
BS12608.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10851-PA | 1053 | B52-RA | 361..1053 | 709..17 | 3465 | 100 | Minus |
CG10851-PC | 1053 | B52-RC | 361..1053 | 709..17 | 3465 | 100 | Minus |
CG10851-PE | 1041 | B52-RE | 376..1041 | 682..17 | 3330 | 100 | Minus |
CG10851-PG | 651 | B52-RG | 1..651 | 667..17 | 3255 | 100 | Minus |
CG10851-PH | 651 | B52-RH | 1..651 | 667..17 | 3255 | 100 | Minus |
CG10851-PB | 990 | B52-RB | 376..954 | 709..131 | 2895 | 100 | Minus |
CG10851-PA | 1053 | B52-RA | 283..357 | 787..713 | 375 | 100 | Minus |
CG10851-PC | 1053 | B52-RC | 283..357 | 787..713 | 375 | 100 | Minus |
CG10851-PE | 1041 | B52-RE | 283..357 | 787..713 | 375 | 100 | Minus |
CG10851-PF | 444 | B52-RF | 283..357 | 787..713 | 375 | 100 | Minus |
CG10851-PD | 408 | B52-RD | 283..357 | 787..713 | 375 | 100 | Minus |
CG10851-PB | 990 | B52-RB | 321..372 | 764..713 | 260 | 100 | Minus |
CG10851-PF | 444 | B52-RF | 361..388 | 709..682 | 140 | 100 | Minus |
CG10851-PA | 1053 | B52-RA | 261..287 | 810..784 | 135 | 100 | Minus |
CG10851-PC | 1053 | B52-RC | 261..287 | 810..784 | 135 | 100 | Minus |
CG10851-PE | 1041 | B52-RE | 261..287 | 810..784 | 135 | 100 | Minus |
CG10851-PB | 990 | B52-RB | 261..287 | 810..784 | 135 | 100 | Minus |
CG10851-PF | 444 | B52-RF | 261..287 | 810..784 | 135 | 100 | Minus |
CG10851-PD | 408 | B52-RD | 261..287 | 810..784 | 135 | 100 | Minus |
CG10851-PD | 408 | B52-RD | 361..387 | 709..683 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B52-RN | 1725 | CG10851-RN | 575..1368 | 810..16 | 3905 | 99.6 | Minus |
B52-RC | 1557 | CG10851-RC | 407..1200 | 810..16 | 3905 | 99.6 | Minus |
B52-RA | 1565 | CG10851-RA | 415..1208 | 810..16 | 3905 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13665589..13665901 | 609..297 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 13666084..13666248 | 296..132 | 825 | 100 | Minus |
3R | 32079331 | 3R | 13666418..13666534 | 132..16 | 585 | 100 | Minus |
3R | 32079331 | 3R | 13665449..13665526 | 686..609 | 390 | 100 | Minus |
3R | 32079331 | 3R | 13662970..13663052 | 764..682 | 370 | 96.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:06:42 has no hits.
BS12608.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:27 Download gff for
BS12608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10851-PC | 261..1053 | 17..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:40 Download gff for
BS12608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B52-RA | 415..1210 | 11..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:58 Download gff for
BS12608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B52-RA | 415..1210 | 11..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:58 Download gff for
BS12608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13666419..13666536 | 11..131 | 97 | | Minus |
3R | 13665590..13665901 | 297..608 | 100 | -> | Minus |
3R | 13666084..13666248 | 132..296 | 100 | -> | Minus |
3R | 13662360..13662404 | 765..810 | 97 | -> | Minus |
3R | 13662970..13663051 | 683..764 | 97 | -> | Minus |
3R | 13665453..13665526 | 609..682 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:40 Download gff for
BS12608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9488082..9488126 | 765..810 | 97 | -> | Minus |
arm_3R | 9488692..9488773 | 683..764 | 97 | -> | Minus |
arm_3R | 9491175..9491248 | 609..682 | 100 | -> | Minus |
arm_3R | 9491312..9491623 | 297..608 | 100 | -> | Minus |
arm_3R | 9491806..9491970 | 132..296 | 100 | -> | Minus |
arm_3R | 9492141..9492258 | 11..131 | 97 | | Minus |
BS12608.5prime Sequence
815 bp (804 high quality bases) assembled on 2006-10-13
> BS12608.5prime
GAAGTTATCAGTCGACATGGTGGGATCTCGAGTGTATGTGGGCGGTCTGC
CCTACGGAGTGCGCGAGCGCGATTTGGAGCGCTTTTTCAAAGGCTACGGC
CGCACACGCGACATCCTCATCAAAAATGGCTACGGCTTTGTGGAATTCGA
AGACTATCGTGATGCCGACGATGCCGTCTATGAACTGAATGGCAAAGAGC
TGCTTGGCGAACGTGTGGTTGTTGAACCCGCCAGGGGTACCGCTCGTGGC
AGCAACCGCGACCGCTACGACGATCGATATGGTGGTCGGCGGGGGGGCGG
GGGCGGTCGTTACAACGAAAAATCATCCTCTCGTTATGGCCCACCGTTGC
GCACTGAGTACCGACTGATTGTGGAGAATTTGTCTAGCCGCGTTAGCTGG
CAGGATCTCAAGGATTACATGCGCCAGGCTGGCGAGGTCACCTATGCCGA
TGCCCACAAGCAGCGTCGCAATGAGGGCGTGGTTGAGTTCGCCTCGTTGT
CGGACATGAAGACGGCCATTGAGAAGTTGGATGACACCGAGCTAAACGGC
AGGCGGATCCACTTGGTCGAGGATCGTCGCGGAGGACGCAGCGGTGGTGG
CGGCGGCAGCGGACGTGGACGCTCCCGTTCGTCCAGCTCCCGATCGCGCT
CCCGATCCCGCAGGCGTTCTCGCTCTCGCCGCTCGTCGCACTCGCGCTCC
AAGTCTCGCAGCCGCTCCAAATCTCGTGGCGGACGCTCCAAGTCAAAGTC
GCCAGTCAAGTCTCGTTCTCGCTCCCGCTCGCGATCCAACAAATCGCGTG
ACGTGTCCAAGTCCA
BS12608.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10851-PA | 1053 | B52-RA | 1..799 | 17..815 | 3970 | 99.8 | Plus |
CG10851-PC | 1053 | B52-RC | 1..799 | 17..815 | 3970 | 99.8 | Plus |
CG10851-PB | 990 | B52-RB | 321..814 | 322..815 | 2445 | 99.7 | Plus |
CG10851-PE | 1041 | B52-RE | 376..787 | 404..815 | 2035 | 99.7 | Plus |
CG10851-PG | 651 | B52-RG | 1..397 | 419..815 | 1960 | 99.7 | Plus |
CG10851-PH | 651 | B52-RH | 1..397 | 419..815 | 1960 | 99.7 | Plus |
CG10851-PF | 444 | B52-RF | 1..388 | 17..404 | 1940 | 100 | Plus |
CG10851-PD | 408 | B52-RD | 1..387 | 17..403 | 1935 | 100 | Plus |
CG10851-PE | 1041 | B52-RE | 1..376 | 17..392 | 1880 | 100 | Plus |
CG10851-PB | 990 | B52-RB | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B52-RN | 1725 | CG10851-RN | 314..1113 | 16..815 | 3985 | 99.9 | Plus |
B52-RC | 1557 | CG10851-RC | 146..945 | 16..815 | 3985 | 99.9 | Plus |
B52-RA | 1565 | CG10851-RA | 154..953 | 16..815 | 3985 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13665589..13665901 | 477..789 | 1550 | 99.7 | Plus |
3R | 32079331 | 3R | 13661733..13661860 | 16..143 | 640 | 100 | Plus |
3R | 32079331 | 3R | 13662296..13662404 | 213..321 | 545 | 100 | Plus |
3R | 32079331 | 3R | 13662970..13663052 | 322..404 | 415 | 100 | Plus |
3R | 32079331 | 3R | 13665449..13665526 | 400..477 | 390 | 100 | Plus |
3R | 32079331 | 3R | 13662160..13662231 | 142..213 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:21:06 has no hits.
BS12608.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:27 Download gff for
BS12608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10851-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:45 Download gff for
BS12608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B52-RA | 149..952 | 11..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:44 Download gff for
BS12608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B52-RA | 149..952 | 11..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:44 Download gff for
BS12608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13666084..13666108 | 790..814 | 100 | | Plus |
3R | 13661728..13661859 | 11..142 | 97 | -> | Plus |
3R | 13662161..13662231 | 143..213 | 100 | -> | Plus |
3R | 13662297..13662404 | 214..321 | 100 | -> | Plus |
3R | 13662970..13663051 | 322..403 | 100 | -> | Plus |
3R | 13665453..13665526 | 404..477 | 100 | -> | Plus |
3R | 13665590..13665901 | 478..789 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:45 Download gff for
BS12608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9487450..9487581 | 11..142 | 97 | -> | Plus |
arm_3R | 9487883..9487953 | 143..213 | 100 | -> | Plus |
arm_3R | 9488019..9488126 | 214..321 | 100 | -> | Plus |
arm_3R | 9488692..9488773 | 322..403 | 100 | -> | Plus |
arm_3R | 9491175..9491248 | 404..477 | 100 | -> | Plus |
arm_3R | 9491312..9491623 | 478..789 | 99 | -> | Plus |
arm_3R | 9491806..9491830 | 790..814 | 100 | | Plus |
BS12608.complete Sequence
1085 bp assembled on 2006-11-01
GenBank Submission: FJ637226
> BS12608.complete
GAAGTTATCAGTCGACATGGTGGGATCTCGAGTGTATGTGGGCGGTCTGC
CCTACGGAGTGCGCGAGCGCGATTTGGAGCGCTTTTTCAAAGGCTACGGC
CGCACACGCGACATCCTCATCAAAAATGGCTACGGCTTTGTGGAATTCGA
AGACTATCGTGATGCCGACGATGCCGTCTATGAACTGAATGGCAAAGAGC
TGCTTGGCGAACGTGTGGTTGTTGAACCCGCCAGGGGTACCGCTCGTGGC
AGCAACCGCGACCGCTACGACGATCGATATGGTGGTCGGCGGGGGGGCGG
GGGCGGTCGTTACAACGAAAAATCATCCTCTCGTTATGGCCCACCGTTGC
GCACTGAGTACCGACTGATTGTGGAGAATTTGTCTAGCCGCGTTAGCTGG
CAGGATCTCAAGGATTACATGCGCCAGGCTGGCGAGGTCACCTATGCCGA
TGCCCACAAGCAGCGTCGCAATGAGGGCGTGGTTGAGTTCGCCTCGTTGT
CGGACATGAAGACGGCCATTGAGAAGTTGGATGACACCGAGCTAAACGGC
AGGCGGATCCACTTGGTCGAGGATCGTCGCGGAGGACGCAGCGGTGGTGG
CGGCGGCAGCGGACGTGGACGCTCCCGTTCGTCCAGCTCCCGATCGCGCT
CCCGATCCCGCAGGCGTTCTCGCTCTCGCCGCTCGTCGCACTCGCGCTCC
AAGTCTCGCAGCCGCTCCAAATCTCGTGGCGGACGCTCCAAGTCCAAGTC
GCCAGTCAAGTCTCGTTCTCGCTCCCGCTCGCGATCCAACAAATCGCGTG
ACGTGTCCAAGTCCAAGTCAAAGTCCCACTCCCGCACCCGCTCCCGTTCG
CCCAAACGTGAGCGTGACTCCCGTTCCCGATCGCGGTCCGTCTCGAAGCG
CGAGTCCCGTTCCCGCTCACGTTCCAAGTCCATCCACCGCGACTCCCGTT
CACGCGATCGATCCGCATCGGCTGAAAACAAGTCGCGTTCGCGCTCACGC
TCCCGTTCGGCCTCGCCCAAAAATGGAAACGCCTCACCGGACCGCAATAA
CGAGAGCATGGACGATTAGAAGCTTTCTAGACCAT
BS12608.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:12:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B52-RN | 1053 | CG10851-PN | 1..1053 | 17..1069 | 5265 | 100 | Plus |
B52-RC | 1053 | CG10851-PC | 1..1053 | 17..1069 | 5265 | 100 | Plus |
B52-RA | 1053 | CG10851-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B52-RN | 1725 | CG10851-RN | 314..1368 | 16..1070 | 5275 | 100 | Plus |
B52-RC | 1557 | CG10851-RC | 146..1200 | 16..1070 | 5275 | 100 | Plus |
B52-RA | 1565 | CG10851-RA | 154..1208 | 16..1070 | 5275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13665589..13665901 | 477..789 | 1565 | 100 | Plus |
3R | 32079331 | 3R | 13666084..13666248 | 790..954 | 825 | 100 | Plus |
3R | 32079331 | 3R | 13661733..13661860 | 16..143 | 640 | 100 | Plus |
3R | 32079331 | 3R | 13666418..13666534 | 954..1070 | 585 | 100 | Plus |
3R | 32079331 | 3R | 13662296..13662404 | 213..321 | 545 | 100 | Plus |
3R | 32079331 | 3R | 13662970..13663052 | 322..404 | 415 | 100 | Plus |
3R | 32079331 | 3R | 13665449..13665526 | 400..477 | 390 | 100 | Plus |
3R | 32079331 | 3R | 13662160..13662231 | 142..213 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:12:32 has no hits.
BS12608.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:51 Download gff for
BS12608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B52-RC | 1..1053 | 17..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:17 Download gff for
BS12608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B52-RH | 160..552 | 11..403 | 99 | -> | Plus |
B52-RH | 2954..3622 | 404..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:53 Download gff for
BS12608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B52-RA | 155..1207 | 17..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:51 Download gff for
BS12608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B52-RH | 160..552 | 11..403 | 99 | -> | Plus |
B52-RH | 2954..3622 | 404..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:12 Download gff for
BS12608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B52-RA | 155..1207 | 17..1069 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:12 Download gff for
BS12608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13666419..13666533 | 955..1069 | 100 | | Plus |
3R | 13661734..13661859 | 17..142 | 100 | -> | Plus |
3R | 13662161..13662231 | 143..213 | 100 | -> | Plus |
3R | 13662297..13662404 | 214..321 | 100 | -> | Plus |
3R | 13662970..13663051 | 322..403 | 100 | -> | Plus |
3R | 13665453..13665526 | 404..477 | 100 | -> | Plus |
3R | 13665590..13665901 | 478..789 | 100 | -> | Plus |
3R | 13666084..13666248 | 790..954 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:53 Download gff for
BS12608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9487456..9487581 | 17..142 | 100 | -> | Plus |
arm_3R | 9487883..9487953 | 143..213 | 100 | -> | Plus |
arm_3R | 9488019..9488126 | 214..321 | 100 | -> | Plus |
arm_3R | 9488692..9488773 | 322..403 | 100 | -> | Plus |
arm_3R | 9491175..9491248 | 404..477 | 100 | -> | Plus |
arm_3R | 9491312..9491623 | 478..789 | 100 | -> | Plus |
arm_3R | 9491806..9491970 | 790..954 | 100 | -> | Plus |
arm_3R | 9492141..9492255 | 955..1069 | 100 | | Plus |
BS12608.pep Sequence
Translation from 16 to 1068
> BS12608.pep
MVGSRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDA
DDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYN
EKSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQR
RNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDRRGGRSGGGGGSGR
GRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSR
SRSRSRSNKSRDVSKSKSKSHSRTRSRSPKRERDSRSRSRSVSKRESRSR
SRSKSIHRDSRSRDRSASAENKSRSRSRSRSASPKNGNASPDRNNESMDD
*
BS12608.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B52-PN | 350 | CG10851-PN | 1..350 | 1..350 | 1770 | 100 | Plus |
B52-PC | 350 | CG10851-PC | 1..350 | 1..350 | 1770 | 100 | Plus |
B52-PA | 350 | CG10851-PA | 1..350 | 1..350 | 1770 | 100 | Plus |
B52-PO | 355 | CG10851-PO | 1..355 | 1..350 | 1754 | 98.6 | Plus |
B52-PM | 355 | CG10851-PM | 1..355 | 1..350 | 1754 | 98.6 | Plus |