Clone BS12609 Report

Search the DGRC for BS12609

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL47-RB
Protein status:BS12609.pep: full length peptide match
Sequenced Size:848

Clone Sequence Records

BS12609.3prime Sequence

822 bp (749 high quality bases) assembled on 2006-10-13

> BS12609.3prime
ATGGTCTAGAAAGCTTTCACACGCCAACTTTGGGCACATAGTGACCACGA
ATCTTGTCCTCGTTGCGCAGCTTGTCCACGTTGACATCGGGGAACTGGCG
ACGCAGCACATCCAGATCGAAATTGGGGTTGCGACGCAGGATCATCATGA
CTTCGTTGCGGGAGCGGTTCTTGGCCTTGCGCTTGGCATTGTAGAGTTTC
TCCCTGTACTTTAAGAGGAATCTGTTCACAGCTCTGCCGCCGTAGCCAAT
GTTGCGGGATTTAATCCATTTGAGGTTCATGAAGGGCGGCAGGGCGTGTT
CGCATGCTTTGTATGAGACCTGCAGGCCAAATGCGTTCTTCACCGCCTTC
TGGGGCCGTTCACCCGTTTCACCTGTTTCCAGCAGGTGATACGCCTTGTT
CCGCTCCCTCACTACTGTCTCCAGGTTTTCCATGGAGATTTTCACCTTAT
CGATGCGCTCCGGACTAGGGAAGACTTCCATTTTGTCATTGCACTCGTGC
TCCATGGTCAGCAGCATGTTGCGCTCCTTGAGGAGCACGAACCACAGCTG
GTGCAGCTCCTTGTTGGACTTGATACGCAGCTCCTCCGTCCGCCAGGCGC
GGCCCACCTTCACCTCATTCTCGCTCCAGTTCTTCTTGTCGTCGAAGAAC
TCCATAAGATCCCGGCGAACAGCGGAAGTGTGCATTTGCATCGGCATTTG
AACATGCGGCGTTTGCAGGGCAGCCGCACTGCACGACTGCCATGGCTGCT
TGGGAGCTGCCAAAAAGCTCCTGACTGTCGCATTTTCCACAGTTTTTTGC
CAATTTAAACATTTTATTAACG

BS12609.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9378-PB 816 Rlc1-RB 11..816 822..17 3930 99.5 Minus
CG9378-PA 684 Rlc1-RA 11..665 822..168 3175 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL47-RB 905 CG9378-RB 53..858 822..17 3970 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9515399..9515686 443..730 1440 100 Plus
3R 32079331 3R 9515073..9515352 168..447 1400 100 Plus
3R 32079331 3R 9514869..9515019 17..167 755 100 Plus
3R 32079331 3R 9515763..9515856 729..822 410 95.7 Plus
Blast to na_te.dros performed on 2015-02-11 04:06:11 has no hits.

BS12609.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:28 Download gff for BS12609.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9378-PB 11..816 17..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:05:56 Download gff for BS12609.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL47-RB 53..860 13..822 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:02 Download gff for BS12609.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL47-RB 53..860 13..822 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:02 Download gff for BS12609.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9515073..9515350 168..445 100 <- Plus
3R 9515402..9515684 446..728 100 <- Plus
3R 9515763..9515856 729..822 96   Plus
3R 9514864..9515019 13..167 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:05:56 Download gff for BS12609.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5340586..5340741 13..167 98 <- Plus
arm_3R 5340795..5341072 168..445 100 <- Plus
arm_3R 5341124..5341406 446..728 100 <- Plus
arm_3R 5341485..5341578 729..822 96   Plus

BS12609.5prime Sequence

825 bp (689 high quality bases) assembled on 2006-10-13

> BS12609.5prime
GAAGTTATCACTCGACATGTCTTCGGCGTTAATAAAATGTTTAAATTTGG
CAAAAACTGTGGGAAATGCGACAGTCAGGAGCTTTTTGGCAGCTCCCAAG
CAGCCATGGCAGTCGTGCAGTGCGGCTGCCCTGCAAACGCCGCATGTTCA
AATGCCGATGCAAATGCACACTTCCGCTGTTCGCCGGGATCTTATGGAGT
TCTTCGACGACAAGAAGAACTGGAGCGAGAATGAGGTGAAGGTGGGCCGC
GCCTGGCGGACGGAGGAGCTGCGTATCAAGTCCAACAAGGAGCTGCACCA
GCTGTGGTTCGTGCTCCTCAAGGAGCGCAACATGCTGCTGACCATGGAGC
ACGAGTGCAATGACAAAATGGAAGTCTTCCCTAGTCCGGAGCGCATCGAT
AAGGTGAAAATCTCCATGGAAAACCTGGAGACAGTAGTGAGGGAGCGGAA
CAAGGCGTATCACCTGCTGGAAACAGGTGAAACGGGTGAACGGCCCCAGA
AGGCGGTGAAGAACGCATTTGGCCTGCAGGTCTCATACAAAGCATGCGAA
CACGCCCTGCCGCCCTTCATGAACCTCAAATGGATTAAATCCCGCAACAT
TGGCTACGGCGGCAGAGCTGTGAACAGATTCCTCTTAAAGTACAGGGAGA
AACTCTACAATGCCAAGCGCAAGGCCAAGAACCGCTCCCGCAACGAAGTC
ATGATGATCCTGCGTCGCAACCCCAATTTCGATCTGGATGTGCTGCGTCG
CCCAGTTCCCCGATGTCAACGTGAACAAGCTGCGCAACAAGGACAAAATT
CGTGGTCACTAATGTGCCCCAAGTT

BS12609.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9378-PB 816 Rlc1-RB 1..807 17..825 3865 99.2 Plus
CG9378-PA 684 Rlc1-RA 1..665 17..681 3325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL47-RB 905 CG9378-RB 43..849 17..825 3935 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9515399..9515686 406..119 1440 100 Minus
3R 32079331 3R 9515073..9515352 681..402 1400 100 Minus
3R 32079331 3R 9514878..9515019 825..682 560 95.8 Minus
3R 32079331 3R 9515763..9515866 120..17 520 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:16:56 has no hits.

BS12609.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:28 Download gff for BS12609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9378-PB 1..807 17..825 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:44:36 Download gff for BS12609.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL47-RB 43..849 17..825 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:31:01 Download gff for BS12609.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL47-RB 43..849 17..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:31:01 Download gff for BS12609.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9515402..9515684 121..403 100 <- Minus
3R 9515763..9515866 17..120 100   Minus
3R 9514878..9515019 682..825 95 <- Minus
3R 9515073..9515350 404..681 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:44:36 Download gff for BS12609.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5340600..5340741 682..825 95 <- Minus
arm_3R 5340795..5341072 404..681 100 <- Minus
arm_3R 5341124..5341406 121..403 100 <- Minus
arm_3R 5341485..5341588 17..120 100   Minus

BS12609.complete Sequence

848 bp assembled on 2008-08-14

GenBank Submission: FJ637227

> BS12609.complete
GAAGTTATCAGTCGACATGTCTTCGGCGTTAATAAAATGTTTAAATTTGG
CAAAAACTGTGGGAAATGCGACAGTCAGGAGCTTTTTGGCAGCTCCCAAG
CAGCCATGGCAGTCGTGCAGTGCGGCTGCCCTGCAAACGCCGCATGTTCA
AATGCCGATGCAAATGCACACTTCCGCTGTTCGCCGGGATCTTATGGAGT
TCTTCGACGACAAGAAGAACTGGAGCGAGAATGAGGTGAAGGTGGGCCGC
GCCTGGCGGACGGAGGAGCTGCGTATCAAGTCCAACAAGGAGCTGCACCA
GCTGTGGTTCGTGCTCCTCAAGGAGCGCAACATGCTGCTGACCATGGAGC
ACGAGTGCAATGACAAAATGGAAGTCTTCCCTAGTCCGGAGCGCATCGAT
AAGGTGAAAATCTCCATGGAAAACCTGGAGACAGTAGTGAGGGAGCGGAA
CAAGGCGTATCACCTGCTGGAAACAGGTGAAACGGGTGAACGGCCCCAGA
AGGCGGTGAAGAACGCATTTGGCCTGCAGGTCTCATACAAAGCATGCGAA
CACGCCCTGCCGCCCTTCATGAACCTCAAATGGATTAAATCCCGCAACAT
TGGCTACGGCGGCAGAGCTGTGAACAGATTCCTCTTAAAGTACAGGGAGA
AACTCTACAATGCCAAGCGCAAGGCCAAGAACCGCTCCCGCAACGAAGTC
ATGATGATCCTGCGTCGCAACCCCAATTTCGATCTGGATGTGCTGCGTCG
CCAGTTCCCCGATGTCAACGTGGACAAGCTGCGCAACGAGGACAAGATTC
GTGGTCACTATGTGCCCAAAGTTGGCGTGTGAAAGCTTTCTAGACCAT

BS12609.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL47-RB 816 CG9378-PB 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL47-RB 905 CG9378-RB 43..858 17..832 4080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9515399..9515686 406..119 1440 100 Minus
3R 32079331 3R 9515073..9515352 681..402 1400 100 Minus
3R 32079331 3R 9514869..9515019 832..682 755 100 Minus
3R 32079331 3R 9515763..9515866 120..17 520 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:26:04 has no hits.

BS12609.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:44:56 Download gff for BS12609.complete
Subject Subject Range Query Range Percent Splice Strand
Rlc1-RB 242..1059 17..836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:48 Download gff for BS12609.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL47-RB 43..857 17..831 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:04 Download gff for BS12609.complete
Subject Subject Range Query Range Percent Splice Strand
Rlc1-RB 242..1056 17..831 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:22 Download gff for BS12609.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL47-RB 43..857 17..831 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:22 Download gff for BS12609.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9515073..9515350 404..681 100 <- Minus
3R 9515402..9515684 121..403 100 <- Minus
3R 9515763..9515866 17..120 100   Minus
3R 9514870..9515019 682..831 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:48 Download gff for BS12609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5340592..5340741 682..831 100 <- Minus
arm_3R 5340795..5341072 404..681 100 <- Minus
arm_3R 5341124..5341406 121..403 100 <- Minus
arm_3R 5341485..5341588 17..120 100   Minus

BS12609.pep Sequence

Translation from 16 to 831

> BS12609.pep
MSSALIKCLNLAKTVGNATVRSFLAAPKQPWQSCSAAALQTPHVQMPMQM
HTSAVRRDLMEFFDDKKNWSENEVKVGRAWRTEELRIKSNKELHQLWFVL
LKERNMLLTMEHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHL
LETGETGERPQKAVKNAFGLQVSYKACEHALPPFMNLKWIKSRNIGYGGR
AVNRFLLKYREKLYNAKRKAKNRSRNEVMMILRRNPNFDLDVLRRQFPDV
NVDKLRNEDKIRGHYVPKVGV*

BS12609.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL47-PB 271 CG9378-PB 1..271 1..271 1422 100 Plus