Clone Sequence Records
BS12609.3prime Sequence
822 bp (749 high quality bases) assembled on 2006-10-13
> BS12609.3prime
ATGGTCTAGAAAGCTTTCACACGCCAACTTTGGGCACATAGTGACCACGA
ATCTTGTCCTCGTTGCGCAGCTTGTCCACGTTGACATCGGGGAACTGGCG
ACGCAGCACATCCAGATCGAAATTGGGGTTGCGACGCAGGATCATCATGA
CTTCGTTGCGGGAGCGGTTCTTGGCCTTGCGCTTGGCATTGTAGAGTTTC
TCCCTGTACTTTAAGAGGAATCTGTTCACAGCTCTGCCGCCGTAGCCAAT
GTTGCGGGATTTAATCCATTTGAGGTTCATGAAGGGCGGCAGGGCGTGTT
CGCATGCTTTGTATGAGACCTGCAGGCCAAATGCGTTCTTCACCGCCTTC
TGGGGCCGTTCACCCGTTTCACCTGTTTCCAGCAGGTGATACGCCTTGTT
CCGCTCCCTCACTACTGTCTCCAGGTTTTCCATGGAGATTTTCACCTTAT
CGATGCGCTCCGGACTAGGGAAGACTTCCATTTTGTCATTGCACTCGTGC
TCCATGGTCAGCAGCATGTTGCGCTCCTTGAGGAGCACGAACCACAGCTG
GTGCAGCTCCTTGTTGGACTTGATACGCAGCTCCTCCGTCCGCCAGGCGC
GGCCCACCTTCACCTCATTCTCGCTCCAGTTCTTCTTGTCGTCGAAGAAC
TCCATAAGATCCCGGCGAACAGCGGAAGTGTGCATTTGCATCGGCATTTG
AACATGCGGCGTTTGCAGGGCAGCCGCACTGCACGACTGCCATGGCTGCT
TGGGAGCTGCCAAAAAGCTCCTGACTGTCGCATTTTCCACAGTTTTTTGC
CAATTTAAACATTTTATTAACG
BS12609.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:25:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9378-PB | 816 | Rlc1-RB | 11..816 | 822..17 | 3930 | 99.5 | Minus |
CG9378-PA | 684 | Rlc1-RA | 11..665 | 822..168 | 3175 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL47-RB | 905 | CG9378-RB | 53..858 | 822..17 | 3970 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9515399..9515686 | 443..730 | 1440 | 100 | Plus |
3R | 32079331 | 3R | 9515073..9515352 | 168..447 | 1400 | 100 | Plus |
3R | 32079331 | 3R | 9514869..9515019 | 17..167 | 755 | 100 | Plus |
3R | 32079331 | 3R | 9515763..9515856 | 729..822 | 410 | 95.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:06:11 has no hits.
BS12609.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:28 Download gff for
BS12609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9378-PB | 11..816 | 17..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:05:56 Download gff for
BS12609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL47-RB | 53..860 | 13..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:02 Download gff for
BS12609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL47-RB | 53..860 | 13..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:02 Download gff for
BS12609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9515073..9515350 | 168..445 | 100 | <- | Plus |
3R | 9515402..9515684 | 446..728 | 100 | <- | Plus |
3R | 9515763..9515856 | 729..822 | 96 | | Plus |
3R | 9514864..9515019 | 13..167 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:05:56 Download gff for
BS12609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5340586..5340741 | 13..167 | 98 | <- | Plus |
arm_3R | 5340795..5341072 | 168..445 | 100 | <- | Plus |
arm_3R | 5341124..5341406 | 446..728 | 100 | <- | Plus |
arm_3R | 5341485..5341578 | 729..822 | 96 | | Plus |
BS12609.5prime Sequence
825 bp (689 high quality bases) assembled on 2006-10-13
> BS12609.5prime
GAAGTTATCACTCGACATGTCTTCGGCGTTAATAAAATGTTTAAATTTGG
CAAAAACTGTGGGAAATGCGACAGTCAGGAGCTTTTTGGCAGCTCCCAAG
CAGCCATGGCAGTCGTGCAGTGCGGCTGCCCTGCAAACGCCGCATGTTCA
AATGCCGATGCAAATGCACACTTCCGCTGTTCGCCGGGATCTTATGGAGT
TCTTCGACGACAAGAAGAACTGGAGCGAGAATGAGGTGAAGGTGGGCCGC
GCCTGGCGGACGGAGGAGCTGCGTATCAAGTCCAACAAGGAGCTGCACCA
GCTGTGGTTCGTGCTCCTCAAGGAGCGCAACATGCTGCTGACCATGGAGC
ACGAGTGCAATGACAAAATGGAAGTCTTCCCTAGTCCGGAGCGCATCGAT
AAGGTGAAAATCTCCATGGAAAACCTGGAGACAGTAGTGAGGGAGCGGAA
CAAGGCGTATCACCTGCTGGAAACAGGTGAAACGGGTGAACGGCCCCAGA
AGGCGGTGAAGAACGCATTTGGCCTGCAGGTCTCATACAAAGCATGCGAA
CACGCCCTGCCGCCCTTCATGAACCTCAAATGGATTAAATCCCGCAACAT
TGGCTACGGCGGCAGAGCTGTGAACAGATTCCTCTTAAAGTACAGGGAGA
AACTCTACAATGCCAAGCGCAAGGCCAAGAACCGCTCCCGCAACGAAGTC
ATGATGATCCTGCGTCGCAACCCCAATTTCGATCTGGATGTGCTGCGTCG
CCCAGTTCCCCGATGTCAACGTGAACAAGCTGCGCAACAAGGACAAAATT
CGTGGTCACTAATGTGCCCCAAGTT
BS12609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:25:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9378-PB | 816 | Rlc1-RB | 1..807 | 17..825 | 3865 | 99.2 | Plus |
CG9378-PA | 684 | Rlc1-RA | 1..665 | 17..681 | 3325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL47-RB | 905 | CG9378-RB | 43..849 | 17..825 | 3935 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9515399..9515686 | 406..119 | 1440 | 100 | Minus |
3R | 32079331 | 3R | 9515073..9515352 | 681..402 | 1400 | 100 | Minus |
3R | 32079331 | 3R | 9514878..9515019 | 825..682 | 560 | 95.8 | Minus |
3R | 32079331 | 3R | 9515763..9515866 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:16:56 has no hits.
BS12609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:28 Download gff for
BS12609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9378-PB | 1..807 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:44:36 Download gff for
BS12609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL47-RB | 43..849 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:31:01 Download gff for
BS12609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL47-RB | 43..849 | 17..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:31:01 Download gff for
BS12609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9515402..9515684 | 121..403 | 100 | <- | Minus |
3R | 9515763..9515866 | 17..120 | 100 | | Minus |
3R | 9514878..9515019 | 682..825 | 95 | <- | Minus |
3R | 9515073..9515350 | 404..681 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:44:36 Download gff for
BS12609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5340600..5340741 | 682..825 | 95 | <- | Minus |
arm_3R | 5340795..5341072 | 404..681 | 100 | <- | Minus |
arm_3R | 5341124..5341406 | 121..403 | 100 | <- | Minus |
arm_3R | 5341485..5341588 | 17..120 | 100 | | Minus |
BS12609.complete Sequence
848 bp assembled on 2008-08-14
GenBank Submission: FJ637227
> BS12609.complete
GAAGTTATCAGTCGACATGTCTTCGGCGTTAATAAAATGTTTAAATTTGG
CAAAAACTGTGGGAAATGCGACAGTCAGGAGCTTTTTGGCAGCTCCCAAG
CAGCCATGGCAGTCGTGCAGTGCGGCTGCCCTGCAAACGCCGCATGTTCA
AATGCCGATGCAAATGCACACTTCCGCTGTTCGCCGGGATCTTATGGAGT
TCTTCGACGACAAGAAGAACTGGAGCGAGAATGAGGTGAAGGTGGGCCGC
GCCTGGCGGACGGAGGAGCTGCGTATCAAGTCCAACAAGGAGCTGCACCA
GCTGTGGTTCGTGCTCCTCAAGGAGCGCAACATGCTGCTGACCATGGAGC
ACGAGTGCAATGACAAAATGGAAGTCTTCCCTAGTCCGGAGCGCATCGAT
AAGGTGAAAATCTCCATGGAAAACCTGGAGACAGTAGTGAGGGAGCGGAA
CAAGGCGTATCACCTGCTGGAAACAGGTGAAACGGGTGAACGGCCCCAGA
AGGCGGTGAAGAACGCATTTGGCCTGCAGGTCTCATACAAAGCATGCGAA
CACGCCCTGCCGCCCTTCATGAACCTCAAATGGATTAAATCCCGCAACAT
TGGCTACGGCGGCAGAGCTGTGAACAGATTCCTCTTAAAGTACAGGGAGA
AACTCTACAATGCCAAGCGCAAGGCCAAGAACCGCTCCCGCAACGAAGTC
ATGATGATCCTGCGTCGCAACCCCAATTTCGATCTGGATGTGCTGCGTCG
CCAGTTCCCCGATGTCAACGTGGACAAGCTGCGCAACGAGGACAAGATTC
GTGGTCACTATGTGCCCAAAGTTGGCGTGTGAAAGCTTTCTAGACCAT
BS12609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL47-RB | 816 | CG9378-PB | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL47-RB | 905 | CG9378-RB | 43..858 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9515399..9515686 | 406..119 | 1440 | 100 | Minus |
3R | 32079331 | 3R | 9515073..9515352 | 681..402 | 1400 | 100 | Minus |
3R | 32079331 | 3R | 9514869..9515019 | 832..682 | 755 | 100 | Minus |
3R | 32079331 | 3R | 9515763..9515866 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:26:04 has no hits.
BS12609.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:44:56 Download gff for
BS12609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rlc1-RB | 242..1059 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:48 Download gff for
BS12609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL47-RB | 43..857 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:04 Download gff for
BS12609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rlc1-RB | 242..1056 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:22 Download gff for
BS12609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL47-RB | 43..857 | 17..831 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:22 Download gff for
BS12609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9515073..9515350 | 404..681 | 100 | <- | Minus |
3R | 9515402..9515684 | 121..403 | 100 | <- | Minus |
3R | 9515763..9515866 | 17..120 | 100 | | Minus |
3R | 9514870..9515019 | 682..831 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:48 Download gff for
BS12609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5340592..5340741 | 682..831 | 100 | <- | Minus |
arm_3R | 5340795..5341072 | 404..681 | 100 | <- | Minus |
arm_3R | 5341124..5341406 | 121..403 | 100 | <- | Minus |
arm_3R | 5341485..5341588 | 17..120 | 100 | | Minus |
BS12609.pep Sequence
Translation from 16 to 831
> BS12609.pep
MSSALIKCLNLAKTVGNATVRSFLAAPKQPWQSCSAAALQTPHVQMPMQM
HTSAVRRDLMEFFDDKKNWSENEVKVGRAWRTEELRIKSNKELHQLWFVL
LKERNMLLTMEHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHL
LETGETGERPQKAVKNAFGLQVSYKACEHALPPFMNLKWIKSRNIGYGGR
AVNRFLLKYREKLYNAKRKAKNRSRNEVMMILRRNPNFDLDVLRRQFPDV
NVDKLRNEDKIRGHYVPKVGV*
BS12609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL47-PB | 271 | CG9378-PB | 1..271 | 1..271 | 1422 | 100 | Plus |