Clone BS12610 Report

Search the DGRC for BS12610

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG31924-RB
Protein status:BS12610.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12610.3prime Sequence

741 bp (741 high quality bases) assembled on 2006-10-13

> BS12610.3prime
ATGGTCTAGAAAGCTTTCACAAAGGTGGCAGTCCAAAATATTGTGGCTTG
AATCCTTCCAGCGATCGCAGTCTCAAAGTGGCGTGAGCACTTGCTCGAAA
GGATACCAGAGGATCGGGCACGAGGACCACCTGCATGCCAGCGGACAGAG
CAGCCTCCATACCAACCAAAGAGGACTCGAAGACCAGACACTTGCTCGGC
TCCGGCGATTCCTCAAAACGAGAGGCGGTGGTGAGGAAAACATCCGGAGC
GGGTTTCCCCCTCTTGACTTCTTCGTCGGAGCCGCTCAAAACCACGTGGT
GGAAGACATCGAAGGGCCTGGAGTGCCGACGCGTCTTTATCCTAAACGAA
TCCCGACAGCAGCCACTTGCGATAGCCATGGGAATGTTGAACGCTTTGAG
GTGATGCAGCAGACGCTCCACACCGGGCATCAGTCGAATGAATCCCATTT
TGCCACGACACTGAAGTTCCTGCTGGTTCTCAAACTCCGTCATGCTGAAG
GGCAGATTGAAGGTGTTTACGATTAGAGCAGCCTGCTCGGAATCTGGCTT
TCCCATGCACCGCATCTTCAGATCGAAGCTATACGTGTGACCATAGGGAT
CCAGAATCCTTTGAACGGTTTCCGTTCTCAAACGCTCGCTGTCTATCAGC
AGACCATCGAGTTCGAAAATGCAATGGGTAACTGGCTGAAAAGAGCACTG
CCTAGAACCCGCCTCTTCCGCCGACATGTCGACTGATAACT

BS12610.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-PB 711 CG31924-RB 1..711 727..17 3555 100 Minus
CG31924-PA 651 CG31924-RA 30..651 638..17 3110 100 Minus
CG31924-PA 651 CG31924-RA 1..29 727..699 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-RB 819 CG31924-RB 29..739 727..17 3555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1354181..1354891 17..727 3555 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:31:38 has no hits.

BS12610.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:29 Download gff for BS12610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31924-PB 1..711 17..727 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:31 Download gff for BS12610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..739 17..727 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:00 Download gff for BS12610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..739 17..727 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:00 Download gff for BS12610.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1354181..1354891 17..727 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:31 Download gff for BS12610.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1354181..1354891 17..727 100   Plus

BS12610.5prime Sequence

741 bp (741 high quality bases) assembled on 2006-10-13

> BS12610.5prime
GAAGTTATCAGTCGACATGTCGGCGGAAGAGGCGGGTTCTAGGCAGTGCT
CTTTTCAGCCAGTTACCCATTGCATTTTCGAACTCGATGGTCTGCTGATA
GACAGCGAGCGTTTGAGAACGGAAACCGTTCAAAGGATTCTGGATCCCTA
TGGTCACACGTATAGCTTCGATCTGAAGATGCGGTGCATGGGAAAGCCAG
ATTCCGAGCAGGCTGCTCTAATCGTAAACACCTTCAATCTGCCCTTCAGC
ATGACGGAGTTTGAGAACCAGCAGGAACTTCAGTGTCGTGGCAAAATGGG
ATTCATTCGACTGATGCCCGGTGTGGAGCGTCTGCTGCATCACCTCAAAG
CGTTCAACATTCCCATGGCTATCGCAAGTGGCTGCTGTCGGGATTCGTTT
AGGATAAAGACGCGTCGGCACTCCAGGCCCTTCGATGTCTTCCACCACGT
GGTTTTGAGCGGCTCCGACGAAGAAGTCAAGAGGGGGAAACCCGCTCCGG
ATGTTTTCCTCACCACCGCCTCTCGTTTTGAGGAATCGCCGGAGCCGAGC
AAGTGTCTGGTCTTCGAGTCCTCTTTGGTTGGTATGGAGGCTGCTCTGTC
CGCTGGCATGCAGGTGGTCCTCGTGCCCGATCCTCTGGTATCCTTTCGAG
CAAGTGCTCACGCCACTTTGAGACTGCGATCGCTGGAAGGATTCAAGCCA
CAATATTTTGGACTGCCACCTTTGTGAAAGCTTTCTAGACC

BS12610.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-PB 711 CG31924-RB 1..711 17..727 3555 100 Plus
CG31924-PA 651 CG31924-RA 30..651 106..727 3110 100 Plus
CG31924-PA 651 CG31924-RA 1..29 17..45 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-RB 819 CG31924-RB 29..739 17..727 3555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1354181..1354891 727..17 3555 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:46:12 has no hits.

BS12610.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:29 Download gff for BS12610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31924-PB 1..711 17..727 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:40 Download gff for BS12610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..739 17..727 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:43 Download gff for BS12610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..739 17..727 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:43 Download gff for BS12610.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1354181..1354891 17..727 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:40 Download gff for BS12610.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1354181..1354891 17..727 100   Minus

BS12610.complete Sequence

743 bp assembled on 2006-11-01

GenBank Submission: FJ637228

> BS12610.complete
GAAGTTATCAGTCGACATGTCGGCGGAAGAGGCGGGTTCTAGGCAGTGCT
CTTTTCAGCCAGTTACCCATTGCATTTTCGAACTCGATGGTCTGCTGATA
GACAGCGAGCGTTTGAGAACGGAAACCGTTCAAAGGATTCTGGATCCCTA
TGGTCACACGTATAGCTTCGATCTGAAGATGCGGTGCATGGGAAAGCCAG
ATTCCGAGCAGGCTGCTCTAATCGTAAACACCTTCAATCTGCCCTTCAGC
ATGACGGAGTTTGAGAACCAGCAGGAACTTCAGTGTCGTGGCAAAATGGG
ATTCATTCGACTGATGCCCGGTGTGGAGCGTCTGCTGCATCACCTCAAAG
CGTTCAACATTCCCATGGCTATCGCAAGTGGCTGCTGTCGGGATTCGTTT
AGGATAAAGACGCGTCGGCACTCCAGGCCCTTCGATGTCTTCCACCACGT
GGTTTTGAGCGGCTCCGACGAAGAAGTCAAGAGGGGGAAACCCGCTCCGG
ATGTTTTCCTCACCACCGCCTCTCGTTTTGAGGAATCGCCGGAGCCGAGC
AAGTGTCTGGTCTTCGAGTCCTCTTTGGTTGGTATGGAGGCTGCTCTGTC
CGCTGGCATGCAGGTGGTCCTCGTGCCCGATCCTCTGGTATCCTTTCGAG
CAAGTGCTCACGCCACTTTGAGACTGCGATCGCTGGAAGGATTCAAGCCA
CAATATTTTGGACTGCCACCTTTGTGAAAGCTTTCTAGACCAT

BS12610.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-RB 711 CG31924-PB 1..711 17..727 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-RB 819 CG31924-RB 29..739 17..727 3555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1354181..1354891 727..17 3555 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:10:42 has no hits.

BS12610.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:52 Download gff for BS12610.complete
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 1..711 17..727 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:18 Download gff for BS12610.complete
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..739 17..727 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:21 Download gff for BS12610.complete
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..738 17..726 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:52 Download gff for BS12610.complete
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..739 17..727 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:35 Download gff for BS12610.complete
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..738 17..726 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:35 Download gff for BS12610.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1354182..1354891 17..726 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:21 Download gff for BS12610.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1354182..1354891 17..726 100   Minus

BS12610.pep Sequence

Translation from 16 to 726

> BS12610.pep
MSAEEAGSRQCSFQPVTHCIFELDGLLIDSERLRTETVQRILDPYGHTYS
FDLKMRCMGKPDSEQAALIVNTFNLPFSMTEFENQQELQCRGKMGFIRLM
PGVERLLHHLKAFNIPMAIASGCCRDSFRIKTRRHSRPFDVFHHVVLSGS
DEEVKRGKPAPDVFLTTASRFEESPEPSKCLVFESSLVGMEAALSAGMQV
VLVPDPLVSFRASAHATLRLRSLEGFKPQYFGLPPL*

BS12610.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-PB 236 CG31924-PB 1..236 1..236 1231 100 Plus
Gs1l-PA 231 CG15441-PA 9..227 16..234 532 48.9 Plus
Gs1l-PB 231 CG15441-PB 9..227 16..234 486 43.4 Plus
CG5565-PA 240 CG5565-PA 3..230 8..235 424 41.3 Plus
CG5556-PB 299 CG5556-PB 22..244 11..235 233 28.9 Plus