Clone Sequence Records
BS12610.3prime Sequence
741 bp (741 high quality bases) assembled on 2006-10-13
> BS12610.3prime
ATGGTCTAGAAAGCTTTCACAAAGGTGGCAGTCCAAAATATTGTGGCTTG
AATCCTTCCAGCGATCGCAGTCTCAAAGTGGCGTGAGCACTTGCTCGAAA
GGATACCAGAGGATCGGGCACGAGGACCACCTGCATGCCAGCGGACAGAG
CAGCCTCCATACCAACCAAAGAGGACTCGAAGACCAGACACTTGCTCGGC
TCCGGCGATTCCTCAAAACGAGAGGCGGTGGTGAGGAAAACATCCGGAGC
GGGTTTCCCCCTCTTGACTTCTTCGTCGGAGCCGCTCAAAACCACGTGGT
GGAAGACATCGAAGGGCCTGGAGTGCCGACGCGTCTTTATCCTAAACGAA
TCCCGACAGCAGCCACTTGCGATAGCCATGGGAATGTTGAACGCTTTGAG
GTGATGCAGCAGACGCTCCACACCGGGCATCAGTCGAATGAATCCCATTT
TGCCACGACACTGAAGTTCCTGCTGGTTCTCAAACTCCGTCATGCTGAAG
GGCAGATTGAAGGTGTTTACGATTAGAGCAGCCTGCTCGGAATCTGGCTT
TCCCATGCACCGCATCTTCAGATCGAAGCTATACGTGTGACCATAGGGAT
CCAGAATCCTTTGAACGGTTTCCGTTCTCAAACGCTCGCTGTCTATCAGC
AGACCATCGAGTTCGAAAATGCAATGGGTAACTGGCTGAAAAGAGCACTG
CCTAGAACCCGCCTCTTCCGCCGACATGTCGACTGATAACT
BS12610.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-PB | 711 | CG31924-RB | 1..711 | 727..17 | 3555 | 100 | Minus |
CG31924-PA | 651 | CG31924-RA | 30..651 | 638..17 | 3110 | 100 | Minus |
CG31924-PA | 651 | CG31924-RA | 1..29 | 727..699 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-RB | 819 | CG31924-RB | 29..739 | 727..17 | 3555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1354181..1354891 | 17..727 | 3555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:31:38 has no hits.
BS12610.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:29 Download gff for
BS12610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-PB | 1..711 | 17..727 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:31 Download gff for
BS12610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..739 | 17..727 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:00 Download gff for
BS12610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..739 | 17..727 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:00 Download gff for
BS12610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1354181..1354891 | 17..727 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:31 Download gff for
BS12610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1354181..1354891 | 17..727 | 100 | | Plus |
BS12610.5prime Sequence
741 bp (741 high quality bases) assembled on 2006-10-13
> BS12610.5prime
GAAGTTATCAGTCGACATGTCGGCGGAAGAGGCGGGTTCTAGGCAGTGCT
CTTTTCAGCCAGTTACCCATTGCATTTTCGAACTCGATGGTCTGCTGATA
GACAGCGAGCGTTTGAGAACGGAAACCGTTCAAAGGATTCTGGATCCCTA
TGGTCACACGTATAGCTTCGATCTGAAGATGCGGTGCATGGGAAAGCCAG
ATTCCGAGCAGGCTGCTCTAATCGTAAACACCTTCAATCTGCCCTTCAGC
ATGACGGAGTTTGAGAACCAGCAGGAACTTCAGTGTCGTGGCAAAATGGG
ATTCATTCGACTGATGCCCGGTGTGGAGCGTCTGCTGCATCACCTCAAAG
CGTTCAACATTCCCATGGCTATCGCAAGTGGCTGCTGTCGGGATTCGTTT
AGGATAAAGACGCGTCGGCACTCCAGGCCCTTCGATGTCTTCCACCACGT
GGTTTTGAGCGGCTCCGACGAAGAAGTCAAGAGGGGGAAACCCGCTCCGG
ATGTTTTCCTCACCACCGCCTCTCGTTTTGAGGAATCGCCGGAGCCGAGC
AAGTGTCTGGTCTTCGAGTCCTCTTTGGTTGGTATGGAGGCTGCTCTGTC
CGCTGGCATGCAGGTGGTCCTCGTGCCCGATCCTCTGGTATCCTTTCGAG
CAAGTGCTCACGCCACTTTGAGACTGCGATCGCTGGAAGGATTCAAGCCA
CAATATTTTGGACTGCCACCTTTGTGAAAGCTTTCTAGACC
BS12610.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-PB | 711 | CG31924-RB | 1..711 | 17..727 | 3555 | 100 | Plus |
CG31924-PA | 651 | CG31924-RA | 30..651 | 106..727 | 3110 | 100 | Plus |
CG31924-PA | 651 | CG31924-RA | 1..29 | 17..45 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-RB | 819 | CG31924-RB | 29..739 | 17..727 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1354181..1354891 | 727..17 | 3555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:46:12 has no hits.
BS12610.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:29 Download gff for
BS12610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-PB | 1..711 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:40 Download gff for
BS12610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..739 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:43 Download gff for
BS12610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..739 | 17..727 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:43 Download gff for
BS12610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1354181..1354891 | 17..727 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:40 Download gff for
BS12610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1354181..1354891 | 17..727 | 100 | | Minus |
BS12610.complete Sequence
743 bp assembled on 2006-11-01
GenBank Submission: FJ637228
> BS12610.complete
GAAGTTATCAGTCGACATGTCGGCGGAAGAGGCGGGTTCTAGGCAGTGCT
CTTTTCAGCCAGTTACCCATTGCATTTTCGAACTCGATGGTCTGCTGATA
GACAGCGAGCGTTTGAGAACGGAAACCGTTCAAAGGATTCTGGATCCCTA
TGGTCACACGTATAGCTTCGATCTGAAGATGCGGTGCATGGGAAAGCCAG
ATTCCGAGCAGGCTGCTCTAATCGTAAACACCTTCAATCTGCCCTTCAGC
ATGACGGAGTTTGAGAACCAGCAGGAACTTCAGTGTCGTGGCAAAATGGG
ATTCATTCGACTGATGCCCGGTGTGGAGCGTCTGCTGCATCACCTCAAAG
CGTTCAACATTCCCATGGCTATCGCAAGTGGCTGCTGTCGGGATTCGTTT
AGGATAAAGACGCGTCGGCACTCCAGGCCCTTCGATGTCTTCCACCACGT
GGTTTTGAGCGGCTCCGACGAAGAAGTCAAGAGGGGGAAACCCGCTCCGG
ATGTTTTCCTCACCACCGCCTCTCGTTTTGAGGAATCGCCGGAGCCGAGC
AAGTGTCTGGTCTTCGAGTCCTCTTTGGTTGGTATGGAGGCTGCTCTGTC
CGCTGGCATGCAGGTGGTCCTCGTGCCCGATCCTCTGGTATCCTTTCGAG
CAAGTGCTCACGCCACTTTGAGACTGCGATCGCTGGAAGGATTCAAGCCA
CAATATTTTGGACTGCCACCTTTGTGAAAGCTTTCTAGACCAT
BS12610.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-RB | 711 | CG31924-PB | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-RB | 819 | CG31924-RB | 29..739 | 17..727 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1354181..1354891 | 727..17 | 3555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:10:42 has no hits.
BS12610.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:52 Download gff for
BS12610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 1..711 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:18 Download gff for
BS12610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..739 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:21 Download gff for
BS12610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..738 | 17..726 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:52 Download gff for
BS12610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..739 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:35 Download gff for
BS12610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..738 | 17..726 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:35 Download gff for
BS12610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1354182..1354891 | 17..726 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:21 Download gff for
BS12610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1354182..1354891 | 17..726 | 100 | | Minus |
BS12610.pep Sequence
Translation from 16 to 726
> BS12610.pep
MSAEEAGSRQCSFQPVTHCIFELDGLLIDSERLRTETVQRILDPYGHTYS
FDLKMRCMGKPDSEQAALIVNTFNLPFSMTEFENQQELQCRGKMGFIRLM
PGVERLLHHLKAFNIPMAIASGCCRDSFRIKTRRHSRPFDVFHHVVLSGS
DEEVKRGKPAPDVFLTTASRFEESPEPSKCLVFESSLVGMEAALSAGMQV
VLVPDPLVSFRASAHATLRLRSLEGFKPQYFGLPPL*
BS12610.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-PB | 236 | CG31924-PB | 1..236 | 1..236 | 1231 | 100 | Plus |
Gs1l-PA | 231 | CG15441-PA | 9..227 | 16..234 | 532 | 48.9 | Plus |
Gs1l-PB | 231 | CG15441-PB | 9..227 | 16..234 | 486 | 43.4 | Plus |
CG5565-PA | 240 | CG5565-PA | 3..230 | 8..235 | 424 | 41.3 | Plus |
CG5556-PB | 299 | CG5556-PB | 22..244 | 11..235 | 233 | 28.9 | Plus |