Clone Sequence Records
BS12616.3prime Sequence
840 bp (800 high quality bases) assembled on 2006-10-13
> BS12616.3prime
ATGGTCTAGAAAGCTTTCAGGCGGCATCCTTCTTCTTGTTTGAATTGGTG
CCATCATTGAAGGGTTGCACATCGCCGGACGCCCAAATACAATACACAAT
CGCCGTGACGACAAGAACGCCAAATGCGACCCAGAAGACTAATCTCCACT
CCAAGAGGGTGGCATTCGGTGTCATTACACCAACTAAGTATGGTGATACC
ACGCCCGTAATCGCACCAATGCCATTGGTAATGGCCATCAGAGTTCCAGC
ATAATTCGGACTCATGTCCAATGGCGTGAGCTTCATGCCAGCATAGTAGG
TGCCCATCAGACCCATGGTAATTGTGAATAGAGCAACGACCATGCCTCGA
TTGCATCCAGCATAGGATGCAGCTACCATGAAGACAGCCGGTCCAAAGGC
GGCCACTCCTGTCATTATTTTGCGCGTGTTTGTGGTGCTCATGCAGTTGC
GTTTGATCATTTGATCGGCCACACAGCCGCTGAGCAGCGACATGATCCAC
ATGGTAACGTAGGGCAGTGAGGAGTAGAGACCATTCGACTTAATCGAAAA
CCGCAGCACATCCGACATATACTTTGGCAGGTAGGAGACCATAATATAGA
AACCCCAATCGTGTCCGATTTGAGCACTGATCAATGCCCACATGGGTATG
CTTGTTAATATGGCAAAAAATGGTGTCTTCGGCTTGTTCTTATCCGGCGG
CGGTACCTCCTGTGCCAAGAACGCACGTTCCTCTGGCTTGATATATGGAT
GAGTGAATGGACTGCTAAAGCACACTAGCGTGAAAACGACAAACCAGACA
AGGGCGATGATCGCAAAAACATAGAATACCCATGGCCAGT
BS12616.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-PA | 1446 | CG9254-RA | 623..1446 | 840..17 | 4120 | 100 | Minus |
| CG5304-PA | 1491 | l(2)01810-RA | 1137..1175 | 317..279 | 145 | 94.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-RA | 1684 | CG9254-RA | 812..1636 | 840..16 | 4125 | 100 | Minus |
| dmGlut-RA | 2426 | CG5304-RA | 1185..1742 | 613..56 | 690 | 75.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13595551..13596375 | 16..840 | 4125 | 100 | Plus |
| 2L | 23513712 | 2L | 12032820..12033270 | 613..163 | 590 | 75.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:38:21 has no hits.
BS12616.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:32 Download gff for
BS12616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-PA | 623..1446 | 17..840 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:58 Download gff for
BS12616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 812..1636 | 16..840 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:51 Download gff for
BS12616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 812..1636 | 16..840 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:51 Download gff for
BS12616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13595551..13596375 | 16..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:58 Download gff for
BS12616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13595551..13596375 | 16..840 | 100 | | Plus |
BS12616.5prime Sequence
939 bp (760 high quality bases) assembled on 2006-10-13
> BS12616.5prime
GAAGTTATCAGTCGACATGGCGGATGCAAAAGAGCAACCAGAATGGGGCA
TAAAGCTCTCAAAATTCTTTGTATTACCCCAACGCTGGATTCTGGCCATC
ATGGGATTCTTTGCCATCTTTAATGCATACACCATGCGGATATGTCTATC
CCAGGCCATCACAGTGCTGGTGGTGAAGAGGAATTATACTATTTTCCACA
CCGAAGCGATATGTGAACCGGATGACCAGTCTGATCCCTCGAGCACTTTC
GAGGGAGGCGACTATGATTGGTCGCAGGAGAAACAGGGTCTAATCCTGGC
CTCTTTCTACATTGGCTATATTGTAACTCATTTGCCTGGTGGAATTCTGG
CTGACAAATTTGGCGGAAAGTGGACACTGAGTCTTGGAATCTTTTTTACG
GCTATTTTTACATTGCTGACACCCGTCTGCATTGTTTATGGCGGTGCCGA
TGCATTAATTGTCCTCCGCGTACTTATGGGACTCGGTGAAGGAACCACTT
TCCCCGCACTCAGCGTTTTGCTAGCCAGCTGGGTACCGGCAAACGAGCGA
GGAATGCTGGGAGCCCTTGTACTCGGCGGTGGTCAGATGGGTAGCATTGC
TGGTAACATTATTTCTGGCTATGTACTCAGCTCCATGGACTGGCCATGGG
TATTCTATGTTTTTGCGATCATCGCCCTTGTCTGGTTTGTCGTTTTCACG
CTAGTGTGCTTTAGCAGTCCATTCACTCATCCATATATCAAGCCAGAGGA
ACGTGCGTTCTTGGCACAGGAGGTACCGCCGCCGGATAAGAACAAGCCGA
AGACACCATTTTTTGCCATATTAACAGCATACCCATGTGGGCATTGATCA
GTGCTCAAATCGGACACGATTGGGGTTTCTATATTATGGTCTCCTACCTG
CCAAAGTATATGTCGGATGTGCTGCGGTTTTCGATTAAG
BS12616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-PA | 1446 | CG9254-RA | 1..810 | 17..826 | 4025 | 99.8 | Plus |
| CG9254-PA | 1446 | CG9254-RA | 811..924 | 826..939 | 570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-RA | 1684 | CG9254-RA | 190..1113 | 17..939 | 4580 | 99.8 | Plus |
| dmGlut-RA | 2426 | CG5304-RA | 357..502 | 38..183 | 280 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13596074..13596997 | 939..17 | 4555 | 99.8 | Minus |
| 2L | 23513712 | 2L | 12031902..12032010 | 75..183 | 275 | 83.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:24:44 has no hits.
BS12616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:33 Download gff for
BS12616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-PA | 1..924 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:54 Download gff for
BS12616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 183..1113 | 9..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:30 Download gff for
BS12616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 183..1113 | 9..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:30 Download gff for
BS12616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13596074..13597004 | 9..939 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:54 Download gff for
BS12616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13596074..13597004 | 9..939 | 99 | | Minus |
BS12616.complete Sequence
1478 bp assembled on 2006-11-01
GenBank Submission: FJ637229
> BS12616.complete
GAAGTTATCAGTCGACATGGCGGATGCAAAAGAGCAACCAGAATGGGGCA
TAAAGCTCTCAAAATTCTTTGTATTACCCCAACGCTGGATTCTGGCCATC
ATGGGATTCTTTGCCATCTTTAATGCATACACCATGCGGATATGTCTATC
CCAGGCCATCACAGTGCTGGTGGTGAAGAGGAATTATACTATTTTCCACA
CCGAAGCGATATGTGAACCGGATGACCAGTCTGATCCCTCGAGCACTTTC
GAGGGAGGCGACTATGATTGGTCGCAGGAGAAACAGGGTCTAATCCTGGC
CTCTTTCTACATTGGCTATATTGTAACTCATTTGCCTGGTGGAATTCTGG
CTGACAAATTTGGCGGAAAGTGGACACTGAGTCTTGGAATCTTTTTTACG
GCTATTTTTACATTGCTGACACCCGTCTGCATTGTTTATGGCGGTGCCGA
TGCATTAATTGTCCTCCGCGTACTTATGGGACTCGGTGAAGGAACCACTT
TCCCCGCACTCAGCGTTTTGCTAGCCAGCTGGGTACCGGCAAACGAGCGA
GGAATGCTGGGAGCCCTTGTACTCGGCGGTGGTCAGATGGGTAGCATTGC
TGGTAACATTATTTCTGGCTATGTACTCAGCTCCATGGACTGGCCATGGG
TATTCTATGTTTTTGCGATCATCGCCCTTGTCTGGTTTGTCGTTTTCACG
CTAGTGTGCTTTAGCAGTCCATTCACTCATCCATATATCAAGCCAGAGGA
ACGTGCGTTCTTGGCACAGGAGGTACCGCCGCCGGATAAGAACAAGCCGA
AGACACCATTTTTTGCCATATTAACAAGCATACCCATGTGGGCATTGATC
AGTGCTCAAATCGGACACGATTGGGGTTTCTATATTATGGTCTCCTACCT
GCCAAAGTATATGTCGGATGTGCTGCGGTTTTCGATTAAGTCGAATGGTC
TCTACTCCTCACTGCCCTACGTTACCATGTGGATCATGTCGCTGCTCAGC
GGCTGTGTGGCCGATCAAATGATCAAACGCAACTGCATGAGCACCACAAA
CACGCGCAAAATAATGACAGGAGTGGCCGCCTTTGGACCGGCTGTCTTCA
TGGTAGCTGCATCCTATGCTGGATGCAATCGAGGCATGGTCGTTGCTCTA
TTCACAATTACCATGGGTCTGATGGGCACCTACTATGCTGGCATGAAGCT
CACGCCATTGGACATGAGTCCGAATTATGCTGGAACTCTGATGGCCATTA
CCAATGGCATTGGTGCGATTACGGGCGTGGTATCACCATACTTAGTTGGT
GTAATGACACCGAATGCCACCCTCTTGGAGTGGAGATTAGTCTTCTGGGT
CGCATTTGGCGTTCTTGTCGTCACGGCGATTGTGTATTGTATTTGGGCGT
CCGGCGATGTGCAACCCTTCAATGATGGCACCAATTCAAACAAGAAGAAG
GATGCCGCCTGAAAGCTTTCTAGACCAT
BS12616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-RA | 1446 | CG9254-PA | 1..1446 | 17..1462 | 7215 | 99.9 | Plus |
| dmGlut-RA | 1491 | CG5304-PA | 841..1398 | 866..1423 | 690 | 74.9 | Plus |
| dmGlut-RA | 1491 | CG5304-PA | 13..158 | 38..183 | 280 | 79.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-RA | 1684 | CG9254-RA | 190..1636 | 17..1463 | 7220 | 99.9 | Plus |
| dmGlut-RA | 2426 | CG5304-RA | 1185..1742 | 866..1423 | 690 | 74.9 | Plus |
| dmGlut-RA | 2426 | CG5304-RA | 357..502 | 38..183 | 280 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13595551..13596997 | 1463..17 | 7220 | 99.9 | Minus |
| 2L | 23513712 | 2L | 12032820..12033270 | 866..1316 | 590 | 75.4 | Plus |
| 2L | 23513712 | 2L | 12031902..12032010 | 75..183 | 275 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:38:04 has no hits.
BS12616.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:53 Download gff for
BS12616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 1..1446 | 17..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:20 Download gff for
BS12616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 183..1636 | 9..1463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:48 Download gff for
BS12616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 190..1634 | 17..1461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:53 Download gff for
BS12616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 183..1636 | 9..1463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:39 Download gff for
BS12616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 190..1634 | 17..1461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:39 Download gff for
BS12616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13595553..13596997 | 17..1461 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:48 Download gff for
BS12616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13595553..13596997 | 17..1461 | 99 | | Minus |
BS12616.pep Sequence
Translation from 16 to 1461
> BS12616.pep
MADAKEQPEWGIKLSKFFVLPQRWILAIMGFFAIFNAYTMRICLSQAITV
LVVKRNYTIFHTEAICEPDDQSDPSSTFEGGDYDWSQEKQGLILASFYIG
YIVTHLPGGILADKFGGKWTLSLGIFFTAIFTLLTPVCIVYGGADALIVL
RVLMGLGEGTTFPALSVLLASWVPANERGMLGALVLGGGQMGSIAGNIIS
GYVLSSMDWPWVFYVFAIIALVWFVVFTLVCFSSPFTHPYIKPEERAFLA
QEVPPPDKNKPKTPFFAILTSIPMWALISAQIGHDWGFYIMVSYLPKYMS
DVLRFSIKSNGLYSSLPYVTMWIMSLLSGCVADQMIKRNCMSTTNTRKIM
TGVAAFGPAVFMVAASYAGCNRGMVVALFTITMGLMGTYYAGMKLTPLDM
SPNYAGTLMAITNGIGAITGVVSPYLVGVMTPNATLLEWRLVFWVAFGVL
VVTAIVYCIWASGDVQPFNDGTNSNKKKDAA*
BS12616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-PA | 481 | CG9254-PA | 1..481 | 1..481 | 2534 | 100 | Plus |
| dmGlut-PA | 496 | CG5304-PA | 3..467 | 6..470 | 1793 | 71.3 | Plus |
| Picot-PD | 516 | CG8098-PD | 17..489 | 6..477 | 847 | 36.9 | Plus |
| Picot-PC | 516 | CG8098-PC | 17..489 | 6..477 | 847 | 36.9 | Plus |
| Picot-PA | 516 | CG8098-PA | 17..489 | 6..477 | 847 | 36.9 | Plus |
