Clone Sequence Records
BS12617.3prime Sequence
645 bp (645 high quality bases) assembled on 2006-10-13
> BS12617.3prime
ATGGTCTAGAAAGCTTTTACTCCATGCTGTCGACAGTTTCCTCGGTAACA
AAGCCCACAATGCTAAATGCAGTTTCCTCGCTGATCCACAGAAGTCCCAC
GATTAGTGCCTCCAACACTCCGATGGCAGCACCGGCGCAGATATCCAAAA
TATAATGACGCTGGAGGATGAGCCGTGAGATGGCCACGCTTACAGCCCAA
GCTGTGACCGGCATTAGGAATATGATGTGGAGCGGGTACAGCTTGGCGAA
GAACAGGAGCACAAAGAACGCCCGGGAGGCATGACCTGAGGGAAAGCTGA
ACTTATCGGGTCCAATGGTCAGCATATCCTTGCTGGCCACGGGTCGCCTG
CGACGAACCAGCGCCTTCAGCACGGCCACGATCACCACGTCGAGTATCAG
GCCGAAGAGCATATTGACTTGCATTTGATACAAGCTCTTTGAGCTGAGCA
ACCAGATGAAGGCGATCCATGAGACAAACCAGGCGATTCCATCGCATGAT
ATCTCCAGAAATCTGCTGTGGATCCGCAGGGATTTGAAGAACGACAGATT
GGAGACGGCTACTACGAAATGCTTCGACACCTGAACATCCTTCTCCAATA
GGTATTTAAGTGCTGGTGATGACGTCCTCATGTCGACTGATAACT
BS12617.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-PA | 615 | CG31717-RA | 1..615 | 631..17 | 2875 | 98.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-RB | 854 | CG31717-RB | 23..641 | 635..17 | 2960 | 98.5 | Minus |
| CG31717-RA | 790 | CG31717-RA | 79..697 | 635..17 | 2960 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10250895..10251501 | 623..17 | 2915 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:09:08 has no hits.
BS12617.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:33 Download gff for
BS12617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-PA | 1..615 | 17..631 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:39 Download gff for
BS12617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 76..697 | 17..639 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:13:48 Download gff for
BS12617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 76..697 | 17..639 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:13:48 Download gff for
BS12617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10250895..10251501 | 17..623 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:39 Download gff for
BS12617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10250895..10251501 | 17..623 | 98 | | Minus |
BS12617.5prime Sequence
645 bp (645 high quality bases) assembled on 2006-10-13
> BS12617.5prime
GAAGTTATCAGTCGACATGAGGACGTCATCACCAGCACTTAAATACCTAT
TGGAGAAGGATGTTCAGGTGTCGAAGCATTTCGTAGTAGCCGTCTCCAAT
CTGTCGTTCTTCAAATCCCTGCGGATCCACAGCAGATTTCTGGAGATATC
ATGCGATGGAATCGCCTGGTTTGTCTCATGGATCGCCTTCATCTGGTTGC
TCAGCTCAAAGAGCTTGTATCAAATGCAAGTCAATATGCTCTTCGGCCTG
ATACTCGACGTGGTGATCGTGGCCGTGCTGAAGGCGCTGGTTCGTCGCAG
GCGACCCGTGGCCAGCAAGGATATGCTGACCATTGGACCCGATAAGTTCA
GCTTTCCCTCAGGTCATGCCTCCCGGGCGTTCTTTGTGCTCCTGTTCTTC
GCCAAGCTGTACCCGCTCCACATCATATTCCTAATGCCGGTCACAGCTTG
GGCTGTAAGCGTGGCCATCTCACGGCTCATCCTCCAGCGTCATTATATTT
TGGATATCTGCGCCGGTGCTGCCATCGGAGTGTTGGAGGCACTAATCGTG
GGACTTCTGTGGATCAGCGAGGAAACTGCATTTAGCATTGTGGGCTTTGT
TACCGAGGAAACTGTCGACAGCATGGAGTAAAAGCTTTCTAGACC
BS12617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-PA | 615 | CG31717-RA | 1..615 | 17..631 | 2875 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-RB | 854 | CG31717-RB | 23..641 | 13..631 | 2960 | 98.5 | Plus |
| CG31717-RA | 790 | CG31717-RA | 79..697 | 13..631 | 2960 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10250895..10251501 | 25..631 | 2915 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:01:04 has no hits.
BS12617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:34 Download gff for
BS12617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-PA | 1..615 | 17..631 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:00 Download gff for
BS12617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 76..697 | 9..631 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:02 Download gff for
BS12617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 76..697 | 9..631 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:02 Download gff for
BS12617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10250895..10251501 | 25..631 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:00 Download gff for
BS12617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10250895..10251501 | 25..631 | 98 | | Plus |
BS12617.complete Sequence
647 bp assembled on 2006-11-01
GenBank Submission: FJ637230
> BS12617.complete
GAAGTTATCAGTCGACATGAGGACGTCATCACCAGCACTTAAATACCTAT
TGGAGAAGGATGTTCAGGTGTCGAAGCATTTCGTAGTAGCCGTCTCCAAT
CTGTCGTTCTTCAAATCCCTGCGGATCCACAGCAGATTTCTGGAGATATC
ATGCGATGGAATCGCCTGGTTTGTCTCATGGATCGCCTTCATCTGGTTGC
TCAGCTCAAAGAGCTTGTATCAAATGCAAGTCAATATGCTCTTCGGCCTG
ATACTCGACGTGGTGATCGTGGCCGTGCTGAAGGCGCTGGTTCGTCGCAG
GCGACCCGTGGCCAGCAAGGATATGCTGACCATTGGACCCGATAAGTTCA
GCTTTCCCTCAGGTCATGCCTCCCGGGCGTTCTTTGTGCTCCTGTTCTTC
GCCAAGCTGTACCCGCTCCACATCATATTCCTAATGCCGGTCACAGCTTG
GGCTGTAAGCGTGGCCATCTCACGGCTCATCCTCCAGCGTCATTATATTT
TGGATATCTGCGCCGGTGCTGCCATCGGAGTGTTGGAGGCACTAATCGTG
GGACTTCTGTGGATCAGCGAGGAAACTGCATTTAGCATTGTGGGCTTTGT
TACCGAGGAAACTGTCGACAGCATGGAGTAAAAGCTTTCTAGACCAT
BS12617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-RB | 615 | CG31717-PB | 1..615 | 17..631 | 2955 | 98.7 | Plus |
| CG31717-RA | 615 | CG31717-PA | 1..615 | 17..631 | 2955 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-RB | 854 | CG31717-RB | 23..641 | 13..631 | 2960 | 98.5 | Plus |
| CG31717-RA | 790 | CG31717-RA | 79..697 | 13..631 | 2960 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10250895..10251501 | 25..631 | 2915 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:17:39 has no hits.
BS12617.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:55 Download gff for
BS12617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 1..615 | 17..631 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:22 Download gff for
BS12617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 76..697 | 9..631 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:22:19 Download gff for
BS12617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 83..695 | 17..629 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:55 Download gff for
BS12617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 76..697 | 9..631 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:06 Download gff for
BS12617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 83..695 | 17..629 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:06 Download gff for
BS12617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10250895..10251499 | 25..629 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:22:19 Download gff for
BS12617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10250895..10251499 | 25..629 | 98 | | Plus |
BS12617.pep Sequence
Translation from 16 to 630
> BS12617.pep
MRTSSPALKYLLEKDVQVSKHFVVAVSNLSFFKSLRIHSRFLEISCDGIA
WFVSWIAFIWLLSSKSLYQMQVNMLFGLILDVVIVAVLKALVRRRRPVAS
KDMLTIGPDKFSFPSGHASRAFFVLLFFAKLYPLHIIFLMPVTAWAVSVA
ISRLILQRHYILDICAGAAIGVLEALIVGLLWISEETAFSIVGFVTEETV
DSME*
BS12617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-PB | 204 | CG31717-PB | 1..204 | 1..204 | 1020 | 100 | Plus |
| CG31717-PA | 204 | CG31717-PA | 1..204 | 1..204 | 1020 | 100 | Plus |
