Clone Sequence Records
BS12620.5prime Sequence
658 bp (626 high quality bases) assembled on 2006-10-13
> BS12620.5prime
GAAGTTATCAGTCGACATGTCCAGCGATCAGGTGAATTCCCAAACGGAAA
TGGAAACGGAAGCGCGAGCGCGAGCGGAGGTGGAAGTGGAGGTCGAACCA
GAAGTGCTCTCGAGAGCCAGTGTGGCCAGCTCCGTAGAAGAGACGGCACC
CAGCACCAGTCACAGTGCATCGGGAAAATCCACCGAGGCACCACTTACTG
GTTGTGTGGTGCGAATTAAGAGCGAACTGCAGGACATTCGGAAAAATCCG
CCACCGAATTGCACCGCCGATTTGCATCACGGGGATCTTCTTCACTGGAC
GGCAGGTGTGAACGGGCCAGTTGGCTCCGTATACGAAGGCGGTCACTTCC
GGCTGGATATACGATTTCCGGCCAGCTATCCATTCCGGGCGCCACGCATT
CGGTTCACCACCCGAATATACCACTGCAACGTGGACAGTCGCGGCGCCAT
TTGCCTGGATGTCCTCGGCGAACGATGGTCCCCAGTGATGAATGTGGCCA
AGGTTCTACTTTCCATTTACGTGCTGATGAGTGAGTGCAATCCAGATGAT
CCGCTAGTCATGTGCATTGCCGATCAGTACAAAACCAATCGCAGGGAGCA
CGACAAAATTGCTAGACACTGGACCAAGCTGTTTGCAATGACCAAGGCGC
AGGATAAG
BS12620.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2574-PA | 720 | CG2574-RA | 1..642 | 17..658 | 3185 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2574-RA | 896 | CG2574-RA | 95..736 | 17..658 | 3195 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12408955..12409442 | 17..504 | 2440 | 100 | Plus |
X | 23542271 | X | 12409508..12409665 | 501..658 | 775 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:28:08 has no hits.
BS12620.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:35 Download gff for
BS12620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-PA | 1..642 | 17..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:32:03 Download gff for
BS12620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 86..736 | 7..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:44:17 Download gff for
BS12620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 86..736 | 7..658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:44:17 Download gff for
BS12620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12408946..12409440 | 7..502 | 99 | -> | Plus |
X | 12409510..12409665 | 503..658 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:32:03 Download gff for
BS12620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12302979..12303473 | 7..502 | 99 | -> | Plus |
arm_X | 12303543..12303698 | 503..658 | 99 | | Plus |
BS12620.complete Sequence
752 bp assembled on 2008-08-15
GenBank Submission: FJ637231
> BS12620.complete
GAAGTTATCAGTCGACATGTCCAGCGATCAGGTGAATTCCCAAACGGAAA
TGGAAACGGAAGCGCGAGCGCGAGCGGAGGTGGAAGTGGAGGTCGAACCA
GAAGTGCTCTCGAGAGCCAGTGTGGCCAGCTCCGTAGAAGAGACGGCACC
CAGCACCAGTCACAGTGCATCGGGAAAATCCACCGAGGCACCACTTACTG
GTTGTGTGGTGCGAATTAAGAGCGAACTGCAGGACATTCGGAAAAATCCG
CCACCGAATTGCACCGCCGATTTGCATCACGGGGATCTTCTTCACTGGAC
GGCAGGTGTGAACGGGCCAGTTGGCTCCGTATACGAAGGCGGTCACTTCC
GGCTGGATATACGATTTCCGGCCAGCTATCCATTCCGGGCGCCACGCATT
CGGTTCACCACCCGAATATACCACTGCAACGTGGACAGTCGCGGCGCCAT
TTGCCTGGATGTCCTCGGCGAACGATGGTCCCCAGTGATGAATGTGGCCA
AGGTTCTACTTTCCATTTACGTGCTGATGAGTGAGTGCAATCCAGATGAT
CCGCTAGTCATGTGCATTGCCGATCAGTACAAAACCAATCGCAGGGAGCA
CGACAAAATTGCTAGACACTGGACCAAGCTGTTTGCAATGACCAAGGCGC
AGGATAAGAACAGAGAAAAGGATGCGGATCAGGGTAATGAGCAAAATCAG
GAAGAAAATCCAATGCCAGGACAGCAAGGAAATTAAAAGCTTTCTAGACC
AT
BS12620.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2574-RA | 720 | CG2574-PA | 1..720 | 17..736 | 3570 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2574-RA | 896 | CG2574-RA | 95..814 | 17..736 | 3570 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12408955..12409442 | 17..504 | 2440 | 100 | Plus |
X | 23542271 | X | 12409508..12409743 | 501..736 | 1150 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:40:13 has no hits.
BS12620.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:41:45 Download gff for
BS12620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 58..789 | 7..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:31 Download gff for
BS12620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 95..812 | 17..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:32 Download gff for
BS12620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 67..784 | 17..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:27 Download gff for
BS12620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 95..812 | 17..734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:27 Download gff for
BS12620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12408955..12409440 | 17..502 | 100 | -> | Plus |
X | 12409510..12409741 | 503..734 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:31 Download gff for
BS12620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12302988..12303473 | 17..502 | 100 | -> | Plus |
arm_X | 12303543..12303774 | 503..734 | 99 | | Plus |
BS12620.pep Sequence
Translation from 16 to 735
> BS12620.pep
MSSDQVNSQTEMETEARARAEVEVEVEPEVLSRASVASSVEETAPSTSHS
ASGKSTEAPLTGCVVRIKSELQDIRKNPPPNCTADLHHGDLLHWTAGVNG
PVGSVYEGGHFRLDIRFPASYPFRAPRIRFTTRIYHCNVDSRGAICLDVL
GERWSPVMNVAKVLLSIYVLMSECNPDDPLVMCIADQYKTNRREHDKIAR
HWTKLFAMTKAQDKNREKDADQGNEQNQEENPMPGQQGN*
BS12620.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2574-PA | 239 | CG2574-PA | 1..239 | 1..239 | 1266 | 100 | Plus |
Ubc2-PD | 232 | CG6720-PD | 90..231 | 66..207 | 441 | 55.6 | Plus |
Ubc2-PC | 232 | CG6720-PC | 90..231 | 66..207 | 441 | 55.6 | Plus |
Ubc2-PB | 232 | CG6720-PB | 90..231 | 66..207 | 441 | 55.6 | Plus |
Ubc2-PA | 232 | CG6720-PA | 90..231 | 66..207 | 441 | 55.6 | Plus |