Clone BS12620 Report

Search the DGRC for BS12620

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG2574-RA
Protein status:BS12620.pep: full length peptide match
Sequenced Size:752

Clone Sequence Records

BS12620.5prime Sequence

658 bp (626 high quality bases) assembled on 2006-10-13

> BS12620.5prime
GAAGTTATCAGTCGACATGTCCAGCGATCAGGTGAATTCCCAAACGGAAA
TGGAAACGGAAGCGCGAGCGCGAGCGGAGGTGGAAGTGGAGGTCGAACCA
GAAGTGCTCTCGAGAGCCAGTGTGGCCAGCTCCGTAGAAGAGACGGCACC
CAGCACCAGTCACAGTGCATCGGGAAAATCCACCGAGGCACCACTTACTG
GTTGTGTGGTGCGAATTAAGAGCGAACTGCAGGACATTCGGAAAAATCCG
CCACCGAATTGCACCGCCGATTTGCATCACGGGGATCTTCTTCACTGGAC
GGCAGGTGTGAACGGGCCAGTTGGCTCCGTATACGAAGGCGGTCACTTCC
GGCTGGATATACGATTTCCGGCCAGCTATCCATTCCGGGCGCCACGCATT
CGGTTCACCACCCGAATATACCACTGCAACGTGGACAGTCGCGGCGCCAT
TTGCCTGGATGTCCTCGGCGAACGATGGTCCCCAGTGATGAATGTGGCCA
AGGTTCTACTTTCCATTTACGTGCTGATGAGTGAGTGCAATCCAGATGAT
CCGCTAGTCATGTGCATTGCCGATCAGTACAAAACCAATCGCAGGGAGCA
CGACAAAATTGCTAGACACTGGACCAAGCTGTTTGCAATGACCAAGGCGC
AGGATAAG

BS12620.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-PA 720 CG2574-RA 1..642 17..658 3185 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-RA 896 CG2574-RA 95..736 17..658 3195 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12408955..12409442 17..504 2440 100 Plus
X 23542271 X 12409508..12409665 501..658 775 99.4 Plus
Blast to na_te.dros performed on 2015-02-11 23:28:08 has no hits.

BS12620.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:35 Download gff for BS12620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2574-PA 1..642 17..658 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:32:03 Download gff for BS12620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 86..736 7..658 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:44:17 Download gff for BS12620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 86..736 7..658 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:44:17 Download gff for BS12620.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12408946..12409440 7..502 99 -> Plus
X 12409510..12409665 503..658 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:32:03 Download gff for BS12620.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12302979..12303473 7..502 99 -> Plus
arm_X 12303543..12303698 503..658 99   Plus

BS12620.complete Sequence

752 bp assembled on 2008-08-15

GenBank Submission: FJ637231

> BS12620.complete
GAAGTTATCAGTCGACATGTCCAGCGATCAGGTGAATTCCCAAACGGAAA
TGGAAACGGAAGCGCGAGCGCGAGCGGAGGTGGAAGTGGAGGTCGAACCA
GAAGTGCTCTCGAGAGCCAGTGTGGCCAGCTCCGTAGAAGAGACGGCACC
CAGCACCAGTCACAGTGCATCGGGAAAATCCACCGAGGCACCACTTACTG
GTTGTGTGGTGCGAATTAAGAGCGAACTGCAGGACATTCGGAAAAATCCG
CCACCGAATTGCACCGCCGATTTGCATCACGGGGATCTTCTTCACTGGAC
GGCAGGTGTGAACGGGCCAGTTGGCTCCGTATACGAAGGCGGTCACTTCC
GGCTGGATATACGATTTCCGGCCAGCTATCCATTCCGGGCGCCACGCATT
CGGTTCACCACCCGAATATACCACTGCAACGTGGACAGTCGCGGCGCCAT
TTGCCTGGATGTCCTCGGCGAACGATGGTCCCCAGTGATGAATGTGGCCA
AGGTTCTACTTTCCATTTACGTGCTGATGAGTGAGTGCAATCCAGATGAT
CCGCTAGTCATGTGCATTGCCGATCAGTACAAAACCAATCGCAGGGAGCA
CGACAAAATTGCTAGACACTGGACCAAGCTGTTTGCAATGACCAAGGCGC
AGGATAAGAACAGAGAAAAGGATGCGGATCAGGGTAATGAGCAAAATCAG
GAAGAAAATCCAATGCCAGGACAGCAAGGAAATTAAAAGCTTTCTAGACC
AT

BS12620.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-RA 720 CG2574-PA 1..720 17..736 3570 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-RA 896 CG2574-RA 95..814 17..736 3570 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12408955..12409442 17..504 2440 100 Plus
X 23542271 X 12409508..12409743 501..736 1150 99.2 Plus
Blast to na_te.dros performed on 2014-11-27 15:40:13 has no hits.

BS12620.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:41:45 Download gff for BS12620.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 58..789 7..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:31 Download gff for BS12620.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 95..812 17..734 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:32 Download gff for BS12620.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 67..784 17..734 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:27 Download gff for BS12620.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 95..812 17..734 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:27 Download gff for BS12620.complete
Subject Subject Range Query Range Percent Splice Strand
X 12408955..12409440 17..502 100 -> Plus
X 12409510..12409741 503..734 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:31 Download gff for BS12620.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12302988..12303473 17..502 100 -> Plus
arm_X 12303543..12303774 503..734 99   Plus

BS12620.pep Sequence

Translation from 16 to 735

> BS12620.pep
MSSDQVNSQTEMETEARARAEVEVEVEPEVLSRASVASSVEETAPSTSHS
ASGKSTEAPLTGCVVRIKSELQDIRKNPPPNCTADLHHGDLLHWTAGVNG
PVGSVYEGGHFRLDIRFPASYPFRAPRIRFTTRIYHCNVDSRGAICLDVL
GERWSPVMNVAKVLLSIYVLMSECNPDDPLVMCIADQYKTNRREHDKIAR
HWTKLFAMTKAQDKNREKDADQGNEQNQEENPMPGQQGN*

BS12620.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-PA 239 CG2574-PA 1..239 1..239 1266 100 Plus
Ubc2-PD 232 CG6720-PD 90..231 66..207 441 55.6 Plus
Ubc2-PC 232 CG6720-PC 90..231 66..207 441 55.6 Plus
Ubc2-PB 232 CG6720-PB 90..231 66..207 441 55.6 Plus
Ubc2-PA 232 CG6720-PA 90..231 66..207 441 55.6 Plus