Clone Sequence Records
BS12621.3prime Sequence
799 bp (734 high quality bases) assembled on 2006-10-13
> BS12621.3prime
ATGGTCTAGAAAGCTTTCAATGTGCGTCACTGCCGCCGGTGGATGCAGTG
GTTTCCATGTCAGATGTATCATTGGGTGGAACTCCACTGCTACTCGGTCC
GTGGTCCGTCATGTCATCATCGCTCATTCCCTCCTCGGATAGAGGATCGT
GGTCCGCCTCCAGAGGTGGATCCATAGCCTTGACCAATTTCACATACTTC
TGGTTCTCGGCTTCCGTAAACATTTTAAACGGCACATCCTTGCCCACAAT
GGCCACATTTATGGTGAGATTCTCGACATCATCGGAACCCAACGATCCTC
GAATGGCCTGAATGGCATGACATATCAGTTCATCCATGTCGCAGTCCTCG
AAACTCTCCATATTTCGCTCCAGATATGTGCGAGCACTCTGCGAACGAGA
TCCAATGGCCATTGCCTTGCAGTTGAGCACATTGGCCGTGGGCATCACCT
GGTAGATATGTGGTCCCTGCTCATCGTATCCAGCCACCAGCAAGCCCACA
CCGTAGGGACGACGATCATAGCGCTGGGTGGTGGTCTGCAGCTTGTTACC
CAGATTGGAAACCAAACGGCGAACCGGAAATTCTGCGTTATAGGAGTGCC
GATATGCCATGCACTCCGTCCTCATGTACTGGCACACCACGCGGGCATCT
GCCGTTAGTCCTGCGATAGACATACCCACGTGGTCATCCACCGGCATGAT
CTTCCGCTGGAGCGTGTTCGTGTCCTTTGAGGTGCGGCACAGGGCGGCCA
GCACGGCATAGTCGGTGCCTTTGAGTCCCACGGTGGCTGCTCCCTGTTT
BS12621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5648-PA | 870 | Prosalpha6T-RA | 88..870 | 799..17 | 3890 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha6T-RA | 1020 | CG5648-RA | 157..939 | 799..17 | 3900 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13232195..13232977 | 799..17 | 3900 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:09:11 has no hits.
BS12621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:35 Download gff for
BS12621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5648-PA | 88..870 | 17..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:42 Download gff for
BS12621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha6T-RA | 157..942 | 12..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:13:59 Download gff for
BS12621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha6T-RA | 157..942 | 12..799 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:13:59 Download gff for
BS12621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13232195..13232980 | 12..799 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:42 Download gff for
BS12621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13232195..13232980 | 12..799 | 99 | | Minus |
BS12621.5prime Sequence
828 bp (740 high quality bases) assembled on 2006-10-13
> BS12621.5prime
GAAGTTATCAGTCGACATGTTCCGGAATCAGTATGACAACGACACAACCA
CTTGGAGTCCGCAGGGTCGTCTCTTCCAGGTGGAGTACGCAATGGAGGCG
GTGAAACAGGGAGCAGCCACCGTGGGACTCAAAGGCACCGACTATGCCGT
GCTGGCCGCCCTGTGCCGCACCTCAAAGGACACGAACACGCTCCAGCGGA
AGATCATGCCGGTGGATGACCACGTGGGTATGTCTATCGCAGGACTAACG
GCAGATGCCCGCGTGGTGTGCCAGTACATGAGGACGGAGTGCATGGCATA
TCGGCACTCCTATAACGCAGAATTTCCGGTTCGCCGTTTGGTTTCCAATC
TGGGTAACAAGCTGCAGACCACCACCCAGCGCTATGATCGTCGTCCCTAC
GGTGTGGGCTTGCTGGTGGCTGGATACGATGAGCAGGGACCACATATCTA
CCAGGTGATGCCCACGGCCAATGTGCTCAACTGCAAGGCAATGGCCATTG
GATCTCGTTCGCAGAGTGCTCGCACATATCTGGAGCGAAATATGGAGAGT
TTCGAGGACTGCGACATGGATGAACTGATATGTCATGCCATTCAGGCCAT
TCGAGGATCGTTGGGTTCCGATGATGTCGAGAATCTCACCATAAATGTGG
CCATTGTGGGCAAGGATGTGCCGTTTTAAATGTTTACGGAAGCCGAGAAC
CAGAAGTATGTGAAATTGGTCAAGGCTATGGATCCACCTCTGGAGGCGGA
CCACGATCCTCTATCCGAGGAGGGAATGAGCGATGATGACATGACGGACC
ACGGACCGAGTAGCAGTGGAGTTCCACC
BS12621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5648-PA | 870 | Prosalpha6T-RA | 1..812 | 17..828 | 4010 | 99.7 | Plus |
CG4904-PA | 840 | Pros35-RA | 37..91 | 53..107 | 175 | 92.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha6T-RA | 1020 | CG5648-RA | 69..881 | 16..828 | 4035 | 99.8 | Plus |
Prosalpha6-RA | 1027 | CG4904-RA | 129..611 | 53..535 | 395 | 73 | Plus |
Prosalpha6-RB | 1070 | CG4904-RB | 129..611 | 53..535 | 395 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13232107..13232919 | 16..828 | 4035 | 99.8 | Plus |
2L | 23513712 | 2L | 10221547..10222029 | 53..535 | 330 | 71.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:54:25 has no hits.
BS12621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:35 Download gff for
BS12621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5648-PA | 1..812 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:51 Download gff for
BS12621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha6T-RA | 69..881 | 16..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:53 Download gff for
BS12621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha6T-RA | 69..881 | 16..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:53 Download gff for
BS12621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13232107..13232919 | 16..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:51 Download gff for
BS12621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13232107..13232919 | 16..828 | 99 | | Plus |
BS12621.complete Sequence
902 bp assembled on 2006-11-01
GenBank Submission: FJ637232
> BS12621.complete
GAAGTTATCAGTCGACATGTTCCGGAATCAGTATGACAACGACACAACCA
CTTGGAGTCCGCAGGGTCGTCTCTTCCAGGTGGAGTACGCAATGGAGGCG
GTGAAACAGGGAGCAGCCACCGTGGGACTCAAAGGCACCGACTATGCCGT
GCTGGCCGCCCTGTGCCGCACCTCAAAGGACACGAACACGCTCCAGCGGA
AGATCATGCCGGTGGATGACCACGTGGGTATGTCTATCGCAGGACTAACG
GCAGATGCCCGCGTGGTGTGCCAGTACATGAGGACGGAGTGCATGGCATA
TCGGCACTCCTATAACGCAGAATTTCCGGTTCGCCGTTTGGTTTCCAATC
TGGGTAACAAGCTGCAGACCACCACCCAGCGCTATGATCGTCGTCCCTAC
GGTGTGGGCTTGCTGGTGGCTGGATACGATGAGCAGGGACCACATATCTA
CCAGGTGATGCCCACGGCCAATGTGCTCAACTGCAAGGCAATGGCCATTG
GATCTCGTTCGCAGAGTGCTCGCACATATCTGGAGCGAAATATGGAGAGT
TTCGAGGACTGCGACATGGATGAACTGATATGTCATGCCATTCAGGCCAT
TCGAGGATCGTTGGGTTCCGATGATGTCGAGAATCTCACCATAAATGTGG
CCATTGTGGGCAAGGATGTGCCGTTTAAAATGTTTACGGAAGCCGAGAAC
CAGAAGTATGTGAAATTGGTCAAGGCTATGGATCCACCTCTGGAGGCGGA
CCACGATCCTCTATCCGAGGAGGGAATGAGCGATGATGACATGACGGACC
ACGGACCGAGTAGCAGTGGAGTTCCACCCAATGATACATCTGACATGGAA
ACCACTGCATCCACCGGCGGCAGTGACGCACATTGAAAGCTTTCTAGACC
AT
BS12621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha6T-RA | 870 | CG5648-PA | 1..870 | 17..886 | 4335 | 99.9 | Plus |
Prosalpha6-RA | 840 | CG4904-PA | 37..519 | 53..535 | 330 | 71.2 | Plus |
Prosalpha6-RB | 840 | CG4904-PB | 37..519 | 53..535 | 330 | 71.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha6T-RA | 1020 | CG5648-RA | 69..939 | 16..886 | 4340 | 99.9 | Plus |
Prosalpha6-RA | 1027 | CG4904-RA | 129..611 | 53..535 | 330 | 71.2 | Plus |
Prosalpha6-RB | 1070 | CG4904-RB | 129..611 | 53..535 | 330 | 71.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13232107..13232977 | 16..886 | 4340 | 99.9 | Plus |
2L | 23513712 | 2L | 10221547..10222029 | 53..535 | 330 | 71.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:07:11 has no hits.
BS12621.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:56 Download gff for
BS12621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha6T-RA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:23 Download gff for
BS12621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha6T-RA | 69..942 | 16..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:36 Download gff for
BS12621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha6T-RA | 75..938 | 22..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:56 Download gff for
BS12621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha6T-RA | 69..942 | 16..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:05 Download gff for
BS12621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha6T-RA | 75..938 | 22..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:05 Download gff for
BS12621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13232113..13232976 | 22..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:36 Download gff for
BS12621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13232113..13232976 | 22..885 | 99 | | Plus |
BS12621.pep Sequence
Translation from 16 to 885
> BS12621.pep
MFRNQYDNDTTTWSPQGRLFQVEYAMEAVKQGAATVGLKGTDYAVLAALC
RTSKDTNTLQRKIMPVDDHVGMSIAGLTADARVVCQYMRTECMAYRHSYN
AEFPVRRLVSNLGNKLQTTTQRYDRRPYGVGLLVAGYDEQGPHIYQVMPT
ANVLNCKAMAIGSRSQSARTYLERNMESFEDCDMDELICHAIQAIRGSLG
SDDVENLTINVAIVGKDVPFKMFTEAENQKYVKLVKAMDPPLEADHDPLS
EEGMSDDDMTDHGPSSSGVPPNDTSDMETTASTGGSDAH*
BS12621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha6T-PA | 289 | CG5648-PA | 1..289 | 1..289 | 1517 | 100 | Plus |
Prosalpha6-PA | 279 | CG4904-PA | 1..275 | 1..280 | 827 | 57.7 | Plus |
Prosalpha6-PB | 279 | CG4904-PB | 1..275 | 1..280 | 827 | 57.7 | Plus |
Prosalpha4-PA | 249 | CG3422-PA | 3..235 | 4..236 | 293 | 32.2 | Plus |
Prosalpha4T2-PB | 252 | CG4569-PB | 4..222 | 5..222 | 291 | 32 | Plus |