Clone BS12621 Report

Search the DGRC for BS12621

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptProsalpha6T-RA
Protein status:BS12621.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12621.3prime Sequence

799 bp (734 high quality bases) assembled on 2006-10-13

> BS12621.3prime
ATGGTCTAGAAAGCTTTCAATGTGCGTCACTGCCGCCGGTGGATGCAGTG
GTTTCCATGTCAGATGTATCATTGGGTGGAACTCCACTGCTACTCGGTCC
GTGGTCCGTCATGTCATCATCGCTCATTCCCTCCTCGGATAGAGGATCGT
GGTCCGCCTCCAGAGGTGGATCCATAGCCTTGACCAATTTCACATACTTC
TGGTTCTCGGCTTCCGTAAACATTTTAAACGGCACATCCTTGCCCACAAT
GGCCACATTTATGGTGAGATTCTCGACATCATCGGAACCCAACGATCCTC
GAATGGCCTGAATGGCATGACATATCAGTTCATCCATGTCGCAGTCCTCG
AAACTCTCCATATTTCGCTCCAGATATGTGCGAGCACTCTGCGAACGAGA
TCCAATGGCCATTGCCTTGCAGTTGAGCACATTGGCCGTGGGCATCACCT
GGTAGATATGTGGTCCCTGCTCATCGTATCCAGCCACCAGCAAGCCCACA
CCGTAGGGACGACGATCATAGCGCTGGGTGGTGGTCTGCAGCTTGTTACC
CAGATTGGAAACCAAACGGCGAACCGGAAATTCTGCGTTATAGGAGTGCC
GATATGCCATGCACTCCGTCCTCATGTACTGGCACACCACGCGGGCATCT
GCCGTTAGTCCTGCGATAGACATACCCACGTGGTCATCCACCGGCATGAT
CTTCCGCTGGAGCGTGTTCGTGTCCTTTGAGGTGCGGCACAGGGCGGCCA
GCACGGCATAGTCGGTGCCTTTGAGTCCCACGGTGGCTGCTCCCTGTTT

BS12621.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5648-PA 870 Prosalpha6T-RA 88..870 799..17 3890 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha6T-RA 1020 CG5648-RA 157..939 799..17 3900 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13232195..13232977 799..17 3900 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 09:09:11 has no hits.

BS12621.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:35 Download gff for BS12621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5648-PA 88..870 17..799 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:42 Download gff for BS12621.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6T-RA 157..942 12..799 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:13:59 Download gff for BS12621.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6T-RA 157..942 12..799 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:13:59 Download gff for BS12621.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13232195..13232980 12..799 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:42 Download gff for BS12621.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13232195..13232980 12..799 99   Minus

BS12621.5prime Sequence

828 bp (740 high quality bases) assembled on 2006-10-13

> BS12621.5prime
GAAGTTATCAGTCGACATGTTCCGGAATCAGTATGACAACGACACAACCA
CTTGGAGTCCGCAGGGTCGTCTCTTCCAGGTGGAGTACGCAATGGAGGCG
GTGAAACAGGGAGCAGCCACCGTGGGACTCAAAGGCACCGACTATGCCGT
GCTGGCCGCCCTGTGCCGCACCTCAAAGGACACGAACACGCTCCAGCGGA
AGATCATGCCGGTGGATGACCACGTGGGTATGTCTATCGCAGGACTAACG
GCAGATGCCCGCGTGGTGTGCCAGTACATGAGGACGGAGTGCATGGCATA
TCGGCACTCCTATAACGCAGAATTTCCGGTTCGCCGTTTGGTTTCCAATC
TGGGTAACAAGCTGCAGACCACCACCCAGCGCTATGATCGTCGTCCCTAC
GGTGTGGGCTTGCTGGTGGCTGGATACGATGAGCAGGGACCACATATCTA
CCAGGTGATGCCCACGGCCAATGTGCTCAACTGCAAGGCAATGGCCATTG
GATCTCGTTCGCAGAGTGCTCGCACATATCTGGAGCGAAATATGGAGAGT
TTCGAGGACTGCGACATGGATGAACTGATATGTCATGCCATTCAGGCCAT
TCGAGGATCGTTGGGTTCCGATGATGTCGAGAATCTCACCATAAATGTGG
CCATTGTGGGCAAGGATGTGCCGTTTTAAATGTTTACGGAAGCCGAGAAC
CAGAAGTATGTGAAATTGGTCAAGGCTATGGATCCACCTCTGGAGGCGGA
CCACGATCCTCTATCCGAGGAGGGAATGAGCGATGATGACATGACGGACC
ACGGACCGAGTAGCAGTGGAGTTCCACC

BS12621.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5648-PA 870 Prosalpha6T-RA 1..812 17..828 4010 99.7 Plus
CG4904-PA 840 Pros35-RA 37..91 53..107 175 92.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha6T-RA 1020 CG5648-RA 69..881 16..828 4035 99.8 Plus
Prosalpha6-RA 1027 CG4904-RA 129..611 53..535 395 73 Plus
Prosalpha6-RB 1070 CG4904-RB 129..611 53..535 395 73 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13232107..13232919 16..828 4035 99.8 Plus
2L 23513712 2L 10221547..10222029 53..535 330 71.2 Plus
Blast to na_te.dros performed on 2015-02-12 03:54:25 has no hits.

BS12621.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:35 Download gff for BS12621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5648-PA 1..812 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:51 Download gff for BS12621.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6T-RA 69..881 16..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:53 Download gff for BS12621.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6T-RA 69..881 16..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:53 Download gff for BS12621.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13232107..13232919 16..828 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:51 Download gff for BS12621.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13232107..13232919 16..828 99   Plus

BS12621.complete Sequence

902 bp assembled on 2006-11-01

GenBank Submission: FJ637232

> BS12621.complete
GAAGTTATCAGTCGACATGTTCCGGAATCAGTATGACAACGACACAACCA
CTTGGAGTCCGCAGGGTCGTCTCTTCCAGGTGGAGTACGCAATGGAGGCG
GTGAAACAGGGAGCAGCCACCGTGGGACTCAAAGGCACCGACTATGCCGT
GCTGGCCGCCCTGTGCCGCACCTCAAAGGACACGAACACGCTCCAGCGGA
AGATCATGCCGGTGGATGACCACGTGGGTATGTCTATCGCAGGACTAACG
GCAGATGCCCGCGTGGTGTGCCAGTACATGAGGACGGAGTGCATGGCATA
TCGGCACTCCTATAACGCAGAATTTCCGGTTCGCCGTTTGGTTTCCAATC
TGGGTAACAAGCTGCAGACCACCACCCAGCGCTATGATCGTCGTCCCTAC
GGTGTGGGCTTGCTGGTGGCTGGATACGATGAGCAGGGACCACATATCTA
CCAGGTGATGCCCACGGCCAATGTGCTCAACTGCAAGGCAATGGCCATTG
GATCTCGTTCGCAGAGTGCTCGCACATATCTGGAGCGAAATATGGAGAGT
TTCGAGGACTGCGACATGGATGAACTGATATGTCATGCCATTCAGGCCAT
TCGAGGATCGTTGGGTTCCGATGATGTCGAGAATCTCACCATAAATGTGG
CCATTGTGGGCAAGGATGTGCCGTTTAAAATGTTTACGGAAGCCGAGAAC
CAGAAGTATGTGAAATTGGTCAAGGCTATGGATCCACCTCTGGAGGCGGA
CCACGATCCTCTATCCGAGGAGGGAATGAGCGATGATGACATGACGGACC
ACGGACCGAGTAGCAGTGGAGTTCCACCCAATGATACATCTGACATGGAA
ACCACTGCATCCACCGGCGGCAGTGACGCACATTGAAAGCTTTCTAGACC
AT

BS12621.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha6T-RA 870 CG5648-PA 1..870 17..886 4335 99.9 Plus
Prosalpha6-RA 840 CG4904-PA 37..519 53..535 330 71.2 Plus
Prosalpha6-RB 840 CG4904-PB 37..519 53..535 330 71.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha6T-RA 1020 CG5648-RA 69..939 16..886 4340 99.9 Plus
Prosalpha6-RA 1027 CG4904-RA 129..611 53..535 330 71.2 Plus
Prosalpha6-RB 1070 CG4904-RB 129..611 53..535 330 71.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13232107..13232977 16..886 4340 99.9 Plus
2L 23513712 2L 10221547..10222029 53..535 330 71.2 Plus
Blast to na_te.dros performed on 2014-11-27 16:07:11 has no hits.

BS12621.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:56 Download gff for BS12621.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6T-RA 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:23 Download gff for BS12621.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6T-RA 69..942 16..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:36 Download gff for BS12621.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6T-RA 75..938 22..885 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:56 Download gff for BS12621.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6T-RA 69..942 16..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:05 Download gff for BS12621.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6T-RA 75..938 22..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:05 Download gff for BS12621.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13232113..13232976 22..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:36 Download gff for BS12621.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13232113..13232976 22..885 99   Plus

BS12621.pep Sequence

Translation from 16 to 885

> BS12621.pep
MFRNQYDNDTTTWSPQGRLFQVEYAMEAVKQGAATVGLKGTDYAVLAALC
RTSKDTNTLQRKIMPVDDHVGMSIAGLTADARVVCQYMRTECMAYRHSYN
AEFPVRRLVSNLGNKLQTTTQRYDRRPYGVGLLVAGYDEQGPHIYQVMPT
ANVLNCKAMAIGSRSQSARTYLERNMESFEDCDMDELICHAIQAIRGSLG
SDDVENLTINVAIVGKDVPFKMFTEAENQKYVKLVKAMDPPLEADHDPLS
EEGMSDDDMTDHGPSSSGVPPNDTSDMETTASTGGSDAH*

BS12621.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha6T-PA 289 CG5648-PA 1..289 1..289 1517 100 Plus
Prosalpha6-PA 279 CG4904-PA 1..275 1..280 827 57.7 Plus
Prosalpha6-PB 279 CG4904-PB 1..275 1..280 827 57.7 Plus
Prosalpha4-PA 249 CG3422-PA 3..235 4..236 293 32.2 Plus
Prosalpha4T2-PB 252 CG4569-PB 4..222 5..222 291 32 Plus