Clone BS12622 Report

Search the DGRC for BS12622

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG31093-RA
Protein status:BS12622.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12622.5prime Sequence

468 bp (468 high quality bases) assembled on 2006-10-13

> BS12622.5prime
GAAGTTATCAGTCGACATGAACTGCATATTTCTTATGTGCTCCCTGCTTG
GCATCTCTTTCGCTATAGTGATCGAGGCCAACTGTCTGCGGGGTACAGGC
CACATGTGGCAGCAGAAGCCACCCACCAGCACAAACAGTTGCAATCGACC
GTTATCTCTGGCTAGAAATGGAACATCAATGGGAAAACGAGCAACGTCTG
CAGTCGACATTCCAGTAGCTACAATGGGAGCACCAGGTCCGGAGGTTGAA
GCAACCTTAGCTGCTCCTCCTGCGGTGTTTCTGGCCAACTACGTCTATGA
GTGCGCCATTCGTCGCACTGCAAACAGTTGCAGCAGACCACCAGGGTCGG
AGCCGGAATCGAAGCCGGAACTTGAATCCGGACCGGAGGTGCCTAAGCCC
CGAACTGTGACACTGGCAGCCGGCGAACTGGAAGGGTTCGGGCCAACTGA
GTGAAAGCTTTCTAGACC

BS12622.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-PA 438 CG31093-RA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-RA 585 CG31093-RA 17..457 17..457 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25789947..25790342 457..62 1980 100 Minus
3R 32079331 3R 25790410..25790455 62..17 230 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:56:36 has no hits.

BS12622.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:37 Download gff for BS12622.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-PA 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:18 Download gff for BS12622.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..457 17..457 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:16 Download gff for BS12622.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..457 17..457 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:16 Download gff for BS12622.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25789947..25790341 63..457 100 <- Minus
3R 25790410..25790455 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:18 Download gff for BS12622.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21615669..21616063 63..457 100 <- Minus
arm_3R 21616132..21616177 17..62 100   Minus

BS12622.3prime Sequence

468 bp (468 high quality bases) assembled on 2006-10-13

> BS12622.3prime
ATGGTCTAGAAAGCTTTCACTCAGTTGGCCCGAACCCTTCCAGTTCGCCG
GCTGCCAGTGTCACAGTTCGGGGCTTAGGCACCTCCGGTCCGGATTCAAG
TTCCGGCTTCGATTCCGGCTCCGACCCTGGTGGTCTGCTGCAACTGTTTG
CAGTGCGACGAATGGCGCACTCATAGACGTAGTTGGCCAGAAACACCGCA
GGAGGAGCAGCTAAGGTTGCTTCAACCTCCGGACCTGGTGCTCCCATTGT
AGCTACTGGAATGTCGACTGCAGACGTTGCTCGTTTTCCCATTGATGTTC
CATTTCTAGCCAGAGATAACGGTCGATTGCAACTGTTTGTGCTGGTGGGT
GGCTTCTGCTGCCACATGTGGCCTGTACCCCGCAGACAGTTGGCCTCGAT
CACTATAGCGAAAGAGATGCCAAGCAGGGAGCACATAAGAAATATGCAGT
TCATGTCGACTGATAACT

BS12622.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-PA 438 CG31093-RA 1..438 454..17 2190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-RA 585 CG31093-RA 17..457 454..14 2205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25789947..25790342 14..409 1980 100 Plus
3R 32079331 3R 25790410..25790455 409..454 230 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:25:46 has no hits.

BS12622.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:36 Download gff for BS12622.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-PA 1..438 17..454 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:01 Download gff for BS12622.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..457 14..454 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:43 Download gff for BS12622.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..457 14..454 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:43 Download gff for BS12622.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25789947..25790341 14..408 100 <- Plus
3R 25790410..25790455 409..454 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:01 Download gff for BS12622.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21615669..21616063 14..408 100 <- Plus
arm_3R 21616132..21616177 409..454 100   Plus

BS12622.complete Sequence

470 bp assembled on 2006-11-01

GenBank Submission: FJ637233

> BS12622.complete
GAAGTTATCAGTCGACATGAACTGCATATTTCTTATGTGCTCCCTGCTTG
GCATCTCTTTCGCTATAGTGATCGAGGCCAACTGTCTGCGGGGTACAGGC
CACATGTGGCAGCAGAAGCCACCCACCAGCACAAACAGTTGCAATCGACC
GTTATCTCTGGCTAGAAATGGAACATCAATGGGAAAACGAGCAACGTCTG
CAGTCGACATTCCAGTAGCTACAATGGGAGCACCAGGTCCGGAGGTTGAA
GCAACCTTAGCTGCTCCTCCTGCGGTGTTTCTGGCCAACTACGTCTATGA
GTGCGCCATTCGTCGCACTGCAAACAGTTGCAGCAGACCACCAGGGTCGG
AGCCGGAATCGAAGCCGGAACTTGAATCCGGACCGGAGGTGCCTAAGCCC
CGAACTGTGACACTGGCAGCCGGCGAACTGGAAGGGTTCGGGCCAACTGA
GTGAAAGCTTTCTAGACCAT

BS12622.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-RA 438 CG31093-PA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-RA 585 CG31093-RA 17..457 17..457 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25789947..25790342 457..62 1980 100 Minus
3R 32079331 3R 25790410..25790455 62..17 230 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:15:19 has no hits.

BS12622.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:57 Download gff for BS12622.complete
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:25 Download gff for BS12622.complete
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..457 17..457 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:00 Download gff for BS12622.complete
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..453 17..453 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:57 Download gff for BS12622.complete
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..457 17..457 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:07 Download gff for BS12622.complete
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..453 17..453 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:07 Download gff for BS12622.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25789951..25790341 63..453 100 <- Minus
3R 25790410..25790455 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:00 Download gff for BS12622.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21615673..21616063 63..453 100 <- Minus
arm_3R 21616132..21616177 17..62 100   Minus

BS12622.pep Sequence

Translation from 16 to 453

> BS12622.pep
MNCIFLMCSLLGISFAIVIEANCLRGTGHMWQQKPPTSTNSCNRPLSLAR
NGTSMGKRATSAVDIPVATMGAPGPEVEATLAAPPAVFLANYVYECAIRR
TANSCSRPPGSEPESKPELESGPEVPKPRTVTLAAGELEGFGPTE*

BS12622.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-PA 145 CG31093-PA 1..145 1..145 765 100 Plus