Clone Sequence Records
BS12623.3prime Sequence
471 bp (471 high quality bases) assembled on 2006-10-13
> BS12623.3prime
ATGGTCTAGAAAGCTTTTACATATTGTAATCGTAGGAATGTGGCTCGAAT
TCGTAACGCTTAAGTCGTTCGTAATACTGGCCAAAGAAAAATCCTTCCAA
CTGGTAGGTCTTGTAGATGCGGAAATGTCCTTCGCTCATGTACCGATTGT
TGAACGCCCATATGCAATGGTTGGGAAAGGCGAATATATAGCTCTGTGTA
CCCCTGGTGTCCATGTCACATGGAGCATGCATCATGTGCAGGTCCATGGG
CATTTCAGGGATTCCTCCTCCGTCACGCTTAATGTGTTCCGGTTTTGCAC
CTGCGGCAGCAGCATCCCCTGCCGGCGCTTCACCCTCCACAGTTCTGGCG
ACTGATCCTCTCGGCTGTTTCTTTTCCAGTGATCTGGCTACTATTTCTAC
CGGTATCAGCGTTCCGCATAAAACGAACAAAAATATTGAATATTTGGCTA
ACTGCATGTCGACTGATAACT
BS12623.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-PA | 441 | CG30270-RA | 1..441 | 457..17 | 2205 | 100 | Minus |
CG30270-PB | 393 | CG30270-RB | 13..393 | 397..17 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-RC | 573 | CG30270-RC | 43..483 | 457..17 | 2205 | 100 | Minus |
CG30270-RD | 563 | CG30270-RD | 43..473 | 457..17 | 2045 | 97.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22784452..22784842 | 407..17 | 1955 | 100 | Minus |
2R | 25286936 | 2R | 22784346..22784396 | 457..407 | 255 | 100 | Minus |
Blast to na_te.dros performed 2015-02-06 10:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 744..820 | 114..196 | 105 | 61.4 | Plus |
BS12623.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:37 Download gff for
BS12623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-PA | 1..441 | 17..457 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:54 Download gff for
BS12623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 39..486 | 13..465 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:50 Download gff for
BS12623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 39..486 | 13..465 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:50 Download gff for
BS12623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22784342..22784396 | 407..465 | 93 | -> | Minus |
2R | 22784453..22784845 | 13..406 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:54 Download gff for
BS12623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18671847..18671901 | 407..465 | 93 | -> | Minus |
arm_2R | 18671958..18672350 | 13..406 | 99 | | Minus |
BS12623.5prime Sequence
471 bp (471 high quality bases) assembled on 2006-10-13
> BS12623.5prime
GAAGTTATCAGTCGACATGCAGTTAGCCAAATATTCAATATTTTTGTTCG
TTTTATGCGGAACGCTGATACCGGTAGAAATAGTAGCCAGATCACTGGAA
AAGAAACAGCCGAGAGGATCAGTCGCCAGAACTGTGGAGGGTGAAGCGCC
GGCAGGGGATGCTGCTGCCGCAGGTGCAAAACCGGAACACATTAAGCGTG
ACGGAGGAGGAATCCCTGAAATGCCCATGGACCTGCACATGATGCATGCT
CCATGTGACATGGACACCAGGGGTACACAGAGCTATATATTCGCCTTTCC
CAACCATTGCATATGGGCGTTCAACAATCGGTACATGAGCGAAGGACATT
TCCGCATCTACAAGACCTACCAGTTGGAAGGATTTTTCTTTGGCCAGTAT
TACGAACGACTTAAGCGTTACGAATTCGAGCCACATTCCTACGATTACAA
TATGTAAAAGCTTTCTAGACC
BS12623.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-PA | 441 | CG30270-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
CG30270-PB | 393 | CG30270-RB | 13..393 | 77..457 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-RC | 573 | CG30270-RC | 43..483 | 17..457 | 2205 | 100 | Plus |
CG30270-RD | 563 | CG30270-RD | 43..473 | 17..457 | 2045 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22784452..22784842 | 67..457 | 1955 | 100 | Plus |
2R | 25286936 | 2R | 22784346..22784396 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 17:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 744..820 | 360..278 | 105 | 61.4 | Minus |
BS12623.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:37 Download gff for
BS12623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-PA | 1..441 | 17..457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:45 Download gff for
BS12623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 39..486 | 9..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:05 Download gff for
BS12623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 39..486 | 9..461 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:05 Download gff for
BS12623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22784342..22784396 | 9..67 | 93 | -> | Plus |
2R | 22784453..22784845 | 68..461 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:45 Download gff for
BS12623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18671847..18671901 | 9..67 | 93 | -> | Plus |
arm_2R | 18671958..18672350 | 68..461 | 99 | | Plus |
BS12623.complete Sequence
473 bp assembled on 2006-11-01
GenBank Submission: FJ637234
> BS12623.complete
GAAGTTATCAGTCGACATGCAGTTAGCCAAATATTCAATATTTTTGTTCG
TTTTATGCGGAACGCTGATACCGGTAGAAATAGTAGCCAGATCACTGGAA
AAGAAACAGCCGAGAGGATCAGTCGCCAGAACTGTGGAGGGTGAAGCGCC
GGCAGGGGATGCTGCTGCCGCAGGTGCAAAACCGGAACACATTAAGCGTG
ACGGAGGAGGAATCCCTGAAATGCCCATGGACCTGCACATGATGCATGCT
CCATGTGACATGGACACCAGGGGTACACAGAGCTATATATTCGCCTTTCC
CAACCATTGCATATGGGCGTTCAACAATCGGTACATGAGCGAAGGACATT
TCCGCATCTACAAGACCTACCAGTTGGAAGGATTTTTCTTTGGCCAGTAT
TACGAACGACTTAAGCGTTACGAATTCGAGCCACATTCCTACGATTACAA
TATGTAAAAGCTTTCTAGACCAT
BS12623.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-RD | 237 | CG30270-PD | 1..237 | 221..457 | 1185 | 100 | Plus |
CG30270-RC | 237 | CG30270-PC | 1..237 | 221..457 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-RC | 573 | CG30270-RC | 43..483 | 17..457 | 2205 | 100 | Plus |
CG30270-RD | 563 | CG30270-RD | 43..473 | 17..457 | 2020 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22784452..22784842 | 67..457 | 1955 | 100 | Plus |
2R | 25286936 | 2R | 22784346..22784396 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 744..820 | 360..278 | 105 | 61.4 | Minus |
BS12623.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:16 Download gff for
BS12623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RA | 1..441 | 17..457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:11 Download gff for
BS12623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 39..486 | 9..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:46 Download gff for
BS12623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 43..481 | 17..455 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:16 Download gff for
BS12623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RA | 44..491 | 9..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:59 Download gff for
BS12623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 43..481 | 17..455 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:59 Download gff for
BS12623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22784346..22784396 | 17..67 | 100 | -> | Plus |
2R | 22784453..22784840 | 68..455 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:46 Download gff for
BS12623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18671851..18671901 | 17..67 | 100 | -> | Plus |
arm_2R | 18671958..18672345 | 68..455 | 100 | | Plus |
BS12623.pep Sequence
Translation from 16 to 456
> BS12623.pep
MQLAKYSIFLFVLCGTLIPVEIVARSLEKKQPRGSVARTVEGEAPAGDAA
AAGAKPEHIKRDGGGIPEMPMDLHMMHAPCDMDTRGTQSYIFAFPNHCIW
AFNNRYMSEGHFRIYKTYQLEGFFFGQYYERLKRYEFEPHSYDYNM*
BS12623.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-PD | 78 | CG30270-PD | 1..78 | 69..146 | 453 | 100 | Plus |
CG30270-PC | 78 | CG30270-PC | 1..78 | 69..146 | 453 | 100 | Plus |
CG34234-PA | 116 | CG34234-PA | 46..116 | 67..138 | 178 | 44.4 | Plus |