Clone BS12623 Report

Search the DGRC for BS12623

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG30270-RC
Protein status:BS12623.pep: gold
Sequenced Size:16

Clone Sequence Records

BS12623.3prime Sequence

471 bp (471 high quality bases) assembled on 2006-10-13

> BS12623.3prime
ATGGTCTAGAAAGCTTTTACATATTGTAATCGTAGGAATGTGGCTCGAAT
TCGTAACGCTTAAGTCGTTCGTAATACTGGCCAAAGAAAAATCCTTCCAA
CTGGTAGGTCTTGTAGATGCGGAAATGTCCTTCGCTCATGTACCGATTGT
TGAACGCCCATATGCAATGGTTGGGAAAGGCGAATATATAGCTCTGTGTA
CCCCTGGTGTCCATGTCACATGGAGCATGCATCATGTGCAGGTCCATGGG
CATTTCAGGGATTCCTCCTCCGTCACGCTTAATGTGTTCCGGTTTTGCAC
CTGCGGCAGCAGCATCCCCTGCCGGCGCTTCACCCTCCACAGTTCTGGCG
ACTGATCCTCTCGGCTGTTTCTTTTCCAGTGATCTGGCTACTATTTCTAC
CGGTATCAGCGTTCCGCATAAAACGAACAAAAATATTGAATATTTGGCTA
ACTGCATGTCGACTGATAACT

BS12623.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-PA 441 CG30270-RA 1..441 457..17 2205 100 Minus
CG30270-PB 393 CG30270-RB 13..393 397..17 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-RC 573 CG30270-RC 43..483 457..17 2205 100 Minus
CG30270-RD 563 CG30270-RD 43..473 457..17 2045 97.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22784452..22784842 407..17 1955 100 Minus
2R 25286936 2R 22784346..22784396 457..407 255 100 Minus
Blast to na_te.dros performed 2015-02-06 10:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 744..820 114..196 105 61.4 Plus

BS12623.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:37 Download gff for BS12623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30270-PA 1..441 17..457 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:54 Download gff for BS12623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 39..486 13..465 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:50 Download gff for BS12623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 39..486 13..465 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:50 Download gff for BS12623.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22784342..22784396 407..465 93 -> Minus
2R 22784453..22784845 13..406 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:54 Download gff for BS12623.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18671847..18671901 407..465 93 -> Minus
arm_2R 18671958..18672350 13..406 99   Minus

BS12623.5prime Sequence

471 bp (471 high quality bases) assembled on 2006-10-13

> BS12623.5prime
GAAGTTATCAGTCGACATGCAGTTAGCCAAATATTCAATATTTTTGTTCG
TTTTATGCGGAACGCTGATACCGGTAGAAATAGTAGCCAGATCACTGGAA
AAGAAACAGCCGAGAGGATCAGTCGCCAGAACTGTGGAGGGTGAAGCGCC
GGCAGGGGATGCTGCTGCCGCAGGTGCAAAACCGGAACACATTAAGCGTG
ACGGAGGAGGAATCCCTGAAATGCCCATGGACCTGCACATGATGCATGCT
CCATGTGACATGGACACCAGGGGTACACAGAGCTATATATTCGCCTTTCC
CAACCATTGCATATGGGCGTTCAACAATCGGTACATGAGCGAAGGACATT
TCCGCATCTACAAGACCTACCAGTTGGAAGGATTTTTCTTTGGCCAGTAT
TACGAACGACTTAAGCGTTACGAATTCGAGCCACATTCCTACGATTACAA
TATGTAAAAGCTTTCTAGACC

BS12623.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-PA 441 CG30270-RA 1..441 17..457 2205 100 Plus
CG30270-PB 393 CG30270-RB 13..393 77..457 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-RC 573 CG30270-RC 43..483 17..457 2205 100 Plus
CG30270-RD 563 CG30270-RD 43..473 17..457 2045 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22784452..22784842 67..457 1955 100 Plus
2R 25286936 2R 22784346..22784396 17..67 255 100 Plus
Blast to na_te.dros performed 2015-02-11 17:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 744..820 360..278 105 61.4 Minus

BS12623.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:37 Download gff for BS12623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30270-PA 1..441 17..457 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:45 Download gff for BS12623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 39..486 9..461 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:05 Download gff for BS12623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 39..486 9..461 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:05 Download gff for BS12623.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22784342..22784396 9..67 93 -> Plus
2R 22784453..22784845 68..461 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:45 Download gff for BS12623.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18671847..18671901 9..67 93 -> Plus
arm_2R 18671958..18672350 68..461 99   Plus

BS12623.complete Sequence

473 bp assembled on 2006-11-01

GenBank Submission: FJ637234

> BS12623.complete
GAAGTTATCAGTCGACATGCAGTTAGCCAAATATTCAATATTTTTGTTCG
TTTTATGCGGAACGCTGATACCGGTAGAAATAGTAGCCAGATCACTGGAA
AAGAAACAGCCGAGAGGATCAGTCGCCAGAACTGTGGAGGGTGAAGCGCC
GGCAGGGGATGCTGCTGCCGCAGGTGCAAAACCGGAACACATTAAGCGTG
ACGGAGGAGGAATCCCTGAAATGCCCATGGACCTGCACATGATGCATGCT
CCATGTGACATGGACACCAGGGGTACACAGAGCTATATATTCGCCTTTCC
CAACCATTGCATATGGGCGTTCAACAATCGGTACATGAGCGAAGGACATT
TCCGCATCTACAAGACCTACCAGTTGGAAGGATTTTTCTTTGGCCAGTAT
TACGAACGACTTAAGCGTTACGAATTCGAGCCACATTCCTACGATTACAA
TATGTAAAAGCTTTCTAGACCAT

BS12623.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-RD 237 CG30270-PD 1..237 221..457 1185 100 Plus
CG30270-RC 237 CG30270-PC 1..237 221..457 1185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-RC 573 CG30270-RC 43..483 17..457 2205 100 Plus
CG30270-RD 563 CG30270-RD 43..473 17..457 2020 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22784452..22784842 67..457 1955 100 Plus
2R 25286936 2R 22784346..22784396 17..67 255 100 Plus
Blast to na_te.dros performed 2014-11-27 16:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 744..820 360..278 105 61.4 Minus

BS12623.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:16 Download gff for BS12623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30270-RA 1..441 17..457 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:11 Download gff for BS12623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 39..486 9..461 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:46 Download gff for BS12623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 43..481 17..455 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:16 Download gff for BS12623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30270-RA 44..491 9..461 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:59 Download gff for BS12623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 43..481 17..455 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:59 Download gff for BS12623.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22784346..22784396 17..67 100 -> Plus
2R 22784453..22784840 68..455 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:46 Download gff for BS12623.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18671851..18671901 17..67 100 -> Plus
arm_2R 18671958..18672345 68..455 100   Plus

BS12623.pep Sequence

Translation from 16 to 456

> BS12623.pep
MQLAKYSIFLFVLCGTLIPVEIVARSLEKKQPRGSVARTVEGEAPAGDAA
AAGAKPEHIKRDGGGIPEMPMDLHMMHAPCDMDTRGTQSYIFAFPNHCIW
AFNNRYMSEGHFRIYKTYQLEGFFFGQYYERLKRYEFEPHSYDYNM*

BS12623.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-PD 78 CG30270-PD 1..78 69..146 453 100 Plus
CG30270-PC 78 CG30270-PC 1..78 69..146 453 100 Plus
CG34234-PA 116 CG34234-PA 46..116 67..138 178 44.4 Plus