Clone BS12624 Report

Search the DGRC for BS12624

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-SA-RA
Protein status:BS12624.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12624.3prime Sequence

642 bp (642 high quality bases) assembled on 2006-10-13

> BS12624.3prime
ATGGTCTAGAAAGCTTTTAGGGATTTGAGAGCCAGTGCGGCCACTCTTGG
ATCTCGTTGTATAGAGTCAGTCCGGGACTCTGGGTGCTGATCACCTGGGA
GCCGGCGATCAGGGCGTAATCCTCGCTCAGCTCACCCTGCTGCACTCCGC
AGGCCAGCAGATCTTTGGCCGCCTGGAGAGCCGCATCCGATGGAAGTTTA
TCCACAAAGTTGCCGATAAAGGCTATGCCCGTGCCAATGGCATTGTATCC
ATAGGTGTGGGCACCGCGCAATCCCCAACCAGTGCCTTCGTATACGATAC
CATCGTTGCCGATCAGGAAGTTGTAACTAATATCGTTGAAGTCCAGCTCG
TTCTGATGATACGCCTGCATGTTCTGGAGAATCTCGGCGCACTTGAGCAG
TCCGCTGCACTCGCCGGTGACCGTGTGATGGATGACCACATAGCGGATGG
GACGCACTTGGTAGTGGAGTCCCAACGAAGGCTTGCCGCCCCACTGACGC
TTCAGCTTGATGGTGGGGCAATTGGCTGGCGAACGCTGACGCGACTTTCC
GGCGGAGACGAATGCCAGCAGTAGTAGCACCAGCCCAATGGCCATAATCC
AAGGAGATCCGAATCGAACCGGCTGCATGTCGACTGATAACT

BS12624.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11709-PA 612 PGRP-SA-RA 1..612 628..17 3060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SA-RB 726 CG11709-RB 38..651 629..16 3070 100 Minus
PGRP-SA-RA 1018 CG11709-RA 330..943 629..16 3070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11561972..11562280 629..321 1545 100 Minus
X 23542271 X 11562518..11562704 202..16 935 100 Minus
X 23542271 X 11562339..11562461 320..198 600 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 11:08:35 has no hits.

BS12624.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:38 Download gff for BS12624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11709-PA 1..612 17..628 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:48 Download gff for BS12624.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 322..943 16..638 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:40 Download gff for BS12624.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 322..943 16..638 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:40 Download gff for BS12624.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11562519..11562704 16..201 100   Minus
X 11561964..11562280 321..638 98 -> Minus
X 11562339..11562457 202..320 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:48 Download gff for BS12624.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11455997..11456313 321..638 98 -> Minus
arm_X 11456372..11456490 202..320 100 -> Minus
arm_X 11456552..11456737 16..201 100   Minus

BS12624.5prime Sequence

642 bp (642 high quality bases) assembled on 2006-10-13

> BS12624.5prime
GAAGTTATCAGTCGACATGCAGCCGGTTCGATTCGGATCTCCTTGGATTA
TGGCCATTGGGCTGGTGCTACTACTGCTGGCATTCGTCTCCGCCGGAAAG
TCGCGTCAGCGTTCGCCAGCCAATTGCCCCACCATCAAGCTGAAGCGTCA
GTGGGGCGGCAAGCCTTCGTTGGGACTCCACTACCAAGTGCGTCCCATCC
GCTATGTGGTCATCCATCACACGGTCACCGGCGAGTGCAGCGGACTGCTC
AAGTGCGCCGAGATTCTCCAGAACATGCAGGCGTATCATCAGAACGAGCT
GGACTTCAACGATATTAGTTACAACTTCCTGATCGGCAACGATGGTATCG
TATACGAAGGCACTGGTTGGGGATTGCGCGGTGCCCACACCTATGGATAC
AATGCCATTGGCACGGGCATAGCCTTTATCGGCAACTTTGTGGATAAACT
TCCATCGGATGCGGCTCTCCAGGCGGCCAAAGATCTGCTGGCCTGCGGAG
TGCAGCAGGGTGAGCTGAGCGAGGATTACGCCCTGATCGCCGGCTCCCAG
GTGATCAGCACCCAGAGTCCCGGACTGACTCTATACAACGAGATCCAAGA
GTGGCCGCACTGGCTCTCAAATCCCTAAAAGCTTTCTAGACC

BS12624.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11709-PA 612 PGRP-SA-RA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SA-RB 726 CG11709-RB 38..651 16..629 3070 100 Plus
PGRP-SA-RA 1018 CG11709-RA 330..943 16..629 3070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11561972..11562280 16..324 1545 100 Plus
X 23542271 X 11562518..11562704 443..629 935 100 Plus
X 23542271 X 11562339..11562461 325..447 600 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 03:54:35 has no hits.

BS12624.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:38 Download gff for BS12624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11709-PA 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:54 Download gff for BS12624.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 322..943 7..629 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:14 Download gff for BS12624.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 322..943 7..629 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:14 Download gff for BS12624.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11562519..11562704 444..629 100   Plus
X 11561964..11562280 7..324 98 -> Plus
X 11562339..11562457 325..443 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:54 Download gff for BS12624.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11455997..11456313 7..324 98 -> Plus
arm_X 11456372..11456490 325..443 100 -> Plus
arm_X 11456552..11456737 444..629 100   Plus

BS12624.complete Sequence

644 bp assembled on 2006-11-01

GenBank Submission: FJ637235

> BS12624.complete
GAAGTTATCAGTCGACATGCAGCCGGTTCGATTCGGATCTCCTTGGATTA
TGGCCATTGGGCTGGTGCTACTACTGCTGGCATTCGTCTCCGCCGGAAAG
TCGCGTCAGCGTTCGCCAGCCAATTGCCCCACCATCAAGCTGAAGCGTCA
GTGGGGCGGCAAGCCTTCGTTGGGACTCCACTACCAAGTGCGTCCCATCC
GCTATGTGGTCATCCATCACACGGTCACCGGCGAGTGCAGCGGACTGCTC
AAGTGCGCCGAGATTCTCCAGAACATGCAGGCGTATCATCAGAACGAGCT
GGACTTCAACGATATTAGTTACAACTTCCTGATCGGCAACGATGGTATCG
TATACGAAGGCACTGGTTGGGGATTGCGCGGTGCCCACACCTATGGATAC
AATGCCATTGGCACGGGCATAGCCTTTATCGGCAACTTTGTGGATAAACT
TCCATCGGATGCGGCTCTCCAGGCGGCCAAAGATCTGCTGGCCTGCGGAG
TGCAGCAGGGTGAGCTGAGCGAGGATTACGCCCTGATCGCCGGCTCCCAG
GTGATCAGCACCCAGAGTCCCGGACTGACTCTATACAACGAGATCCAAGA
GTGGCCGCACTGGCTCTCAAATCCCTAAAAGCTTTCTAGACCAT

BS12624.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SA-RB 612 CG11709-PB 1..612 17..628 3060 100 Plus
PGRP-SA-RA 612 CG11709-PA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SA-RB 726 CG11709-RB 38..651 16..629 3070 100 Plus
PGRP-SA-RA 1018 CG11709-RA 330..943 16..629 3070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11561972..11562280 16..324 1545 100 Plus
X 23542271 X 11562518..11562704 443..629 935 100 Plus
X 23542271 X 11562339..11562461 325..447 600 99.2 Plus
Blast to na_te.dros performed on 2014-11-27 20:46:31 has no hits.

BS12624.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:40 Download gff for BS12624.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:02 Download gff for BS12624.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 436..1057 7..629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:23 Download gff for BS12624.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 331..940 17..626 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:40 Download gff for BS12624.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 436..1057 7..629 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:59 Download gff for BS12624.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 331..940 17..626 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:59 Download gff for BS12624.complete
Subject Subject Range Query Range Percent Splice Strand
X 11562519..11562701 444..626 100   Plus
X 11561973..11562280 17..324 100 -> Plus
X 11562339..11562457 325..443 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:23 Download gff for BS12624.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11456006..11456313 17..324 100 -> Plus
arm_X 11456372..11456490 325..443 100 -> Plus
arm_X 11456552..11456734 444..626 100   Plus

BS12624.pep Sequence

Translation from 16 to 627

> BS12624.pep
MQPVRFGSPWIMAIGLVLLLLAFVSAGKSRQRSPANCPTIKLKRQWGGKP
SLGLHYQVRPIRYVVIHHTVTGECSGLLKCAEILQNMQAYHQNELDFNDI
SYNFLIGNDGIVYEGTGWGLRGAHTYGYNAIGTGIAFIGNFVDKLPSDAA
LQAAKDLLACGVQQGELSEDYALIAGSQVISTQSPGLTLYNEIQEWPHWL
SNP*

BS12624.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SA-PB 203 CG11709-PB 1..203 1..203 1084 100 Plus
PGRP-SA-PA 203 CG11709-PA 1..203 1..203 1084 100 Plus
PGRP-LE-PB 345 CG8995-PB 198..337 60..199 358 49.3 Plus
PGRP-LE-PA 345 CG8995-PA 198..337 60..199 358 49.3 Plus
PGRP-SC2-PA 184 CG14745-PA 22..182 39..199 356 42.9 Plus