Clone Sequence Records
BS12624.3prime Sequence
642 bp (642 high quality bases) assembled on 2006-10-13
> BS12624.3prime
ATGGTCTAGAAAGCTTTTAGGGATTTGAGAGCCAGTGCGGCCACTCTTGG
ATCTCGTTGTATAGAGTCAGTCCGGGACTCTGGGTGCTGATCACCTGGGA
GCCGGCGATCAGGGCGTAATCCTCGCTCAGCTCACCCTGCTGCACTCCGC
AGGCCAGCAGATCTTTGGCCGCCTGGAGAGCCGCATCCGATGGAAGTTTA
TCCACAAAGTTGCCGATAAAGGCTATGCCCGTGCCAATGGCATTGTATCC
ATAGGTGTGGGCACCGCGCAATCCCCAACCAGTGCCTTCGTATACGATAC
CATCGTTGCCGATCAGGAAGTTGTAACTAATATCGTTGAAGTCCAGCTCG
TTCTGATGATACGCCTGCATGTTCTGGAGAATCTCGGCGCACTTGAGCAG
TCCGCTGCACTCGCCGGTGACCGTGTGATGGATGACCACATAGCGGATGG
GACGCACTTGGTAGTGGAGTCCCAACGAAGGCTTGCCGCCCCACTGACGC
TTCAGCTTGATGGTGGGGCAATTGGCTGGCGAACGCTGACGCGACTTTCC
GGCGGAGACGAATGCCAGCAGTAGTAGCACCAGCCCAATGGCCATAATCC
AAGGAGATCCGAATCGAACCGGCTGCATGTCGACTGATAACT
BS12624.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11709-PA | 612 | PGRP-SA-RA | 1..612 | 628..17 | 3060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SA-RB | 726 | CG11709-RB | 38..651 | 629..16 | 3070 | 100 | Minus |
PGRP-SA-RA | 1018 | CG11709-RA | 330..943 | 629..16 | 3070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11561972..11562280 | 629..321 | 1545 | 100 | Minus |
X | 23542271 | X | 11562518..11562704 | 202..16 | 935 | 100 | Minus |
X | 23542271 | X | 11562339..11562461 | 320..198 | 600 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:08:35 has no hits.
BS12624.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:38 Download gff for
BS12624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11709-PA | 1..612 | 17..628 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:48 Download gff for
BS12624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 322..943 | 16..638 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:40 Download gff for
BS12624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 322..943 | 16..638 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:40 Download gff for
BS12624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11562519..11562704 | 16..201 | 100 | | Minus |
X | 11561964..11562280 | 321..638 | 98 | -> | Minus |
X | 11562339..11562457 | 202..320 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:48 Download gff for
BS12624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11455997..11456313 | 321..638 | 98 | -> | Minus |
arm_X | 11456372..11456490 | 202..320 | 100 | -> | Minus |
arm_X | 11456552..11456737 | 16..201 | 100 | | Minus |
BS12624.5prime Sequence
642 bp (642 high quality bases) assembled on 2006-10-13
> BS12624.5prime
GAAGTTATCAGTCGACATGCAGCCGGTTCGATTCGGATCTCCTTGGATTA
TGGCCATTGGGCTGGTGCTACTACTGCTGGCATTCGTCTCCGCCGGAAAG
TCGCGTCAGCGTTCGCCAGCCAATTGCCCCACCATCAAGCTGAAGCGTCA
GTGGGGCGGCAAGCCTTCGTTGGGACTCCACTACCAAGTGCGTCCCATCC
GCTATGTGGTCATCCATCACACGGTCACCGGCGAGTGCAGCGGACTGCTC
AAGTGCGCCGAGATTCTCCAGAACATGCAGGCGTATCATCAGAACGAGCT
GGACTTCAACGATATTAGTTACAACTTCCTGATCGGCAACGATGGTATCG
TATACGAAGGCACTGGTTGGGGATTGCGCGGTGCCCACACCTATGGATAC
AATGCCATTGGCACGGGCATAGCCTTTATCGGCAACTTTGTGGATAAACT
TCCATCGGATGCGGCTCTCCAGGCGGCCAAAGATCTGCTGGCCTGCGGAG
TGCAGCAGGGTGAGCTGAGCGAGGATTACGCCCTGATCGCCGGCTCCCAG
GTGATCAGCACCCAGAGTCCCGGACTGACTCTATACAACGAGATCCAAGA
GTGGCCGCACTGGCTCTCAAATCCCTAAAAGCTTTCTAGACC
BS12624.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11709-PA | 612 | PGRP-SA-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SA-RB | 726 | CG11709-RB | 38..651 | 16..629 | 3070 | 100 | Plus |
PGRP-SA-RA | 1018 | CG11709-RA | 330..943 | 16..629 | 3070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11561972..11562280 | 16..324 | 1545 | 100 | Plus |
X | 23542271 | X | 11562518..11562704 | 443..629 | 935 | 100 | Plus |
X | 23542271 | X | 11562339..11562461 | 325..447 | 600 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:54:35 has no hits.
BS12624.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:38 Download gff for
BS12624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11709-PA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:54 Download gff for
BS12624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 322..943 | 7..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:14 Download gff for
BS12624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 322..943 | 7..629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:14 Download gff for
BS12624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11562519..11562704 | 444..629 | 100 | | Plus |
X | 11561964..11562280 | 7..324 | 98 | -> | Plus |
X | 11562339..11562457 | 325..443 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:54 Download gff for
BS12624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11455997..11456313 | 7..324 | 98 | -> | Plus |
arm_X | 11456372..11456490 | 325..443 | 100 | -> | Plus |
arm_X | 11456552..11456737 | 444..629 | 100 | | Plus |
BS12624.complete Sequence
644 bp assembled on 2006-11-01
GenBank Submission: FJ637235
> BS12624.complete
GAAGTTATCAGTCGACATGCAGCCGGTTCGATTCGGATCTCCTTGGATTA
TGGCCATTGGGCTGGTGCTACTACTGCTGGCATTCGTCTCCGCCGGAAAG
TCGCGTCAGCGTTCGCCAGCCAATTGCCCCACCATCAAGCTGAAGCGTCA
GTGGGGCGGCAAGCCTTCGTTGGGACTCCACTACCAAGTGCGTCCCATCC
GCTATGTGGTCATCCATCACACGGTCACCGGCGAGTGCAGCGGACTGCTC
AAGTGCGCCGAGATTCTCCAGAACATGCAGGCGTATCATCAGAACGAGCT
GGACTTCAACGATATTAGTTACAACTTCCTGATCGGCAACGATGGTATCG
TATACGAAGGCACTGGTTGGGGATTGCGCGGTGCCCACACCTATGGATAC
AATGCCATTGGCACGGGCATAGCCTTTATCGGCAACTTTGTGGATAAACT
TCCATCGGATGCGGCTCTCCAGGCGGCCAAAGATCTGCTGGCCTGCGGAG
TGCAGCAGGGTGAGCTGAGCGAGGATTACGCCCTGATCGCCGGCTCCCAG
GTGATCAGCACCCAGAGTCCCGGACTGACTCTATACAACGAGATCCAAGA
GTGGCCGCACTGGCTCTCAAATCCCTAAAAGCTTTCTAGACCAT
BS12624.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SA-RB | 612 | CG11709-PB | 1..612 | 17..628 | 3060 | 100 | Plus |
PGRP-SA-RA | 612 | CG11709-PA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SA-RB | 726 | CG11709-RB | 38..651 | 16..629 | 3070 | 100 | Plus |
PGRP-SA-RA | 1018 | CG11709-RA | 330..943 | 16..629 | 3070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11561972..11562280 | 16..324 | 1545 | 100 | Plus |
X | 23542271 | X | 11562518..11562704 | 443..629 | 935 | 100 | Plus |
X | 23542271 | X | 11562339..11562461 | 325..447 | 600 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:46:31 has no hits.
BS12624.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:40 Download gff for
BS12624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:02 Download gff for
BS12624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 436..1057 | 7..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:23 Download gff for
BS12624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 331..940 | 17..626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:40 Download gff for
BS12624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 436..1057 | 7..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:59 Download gff for
BS12624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 331..940 | 17..626 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:59 Download gff for
BS12624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11562519..11562701 | 444..626 | 100 | | Plus |
X | 11561973..11562280 | 17..324 | 100 | -> | Plus |
X | 11562339..11562457 | 325..443 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:23 Download gff for
BS12624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11456006..11456313 | 17..324 | 100 | -> | Plus |
arm_X | 11456372..11456490 | 325..443 | 100 | -> | Plus |
arm_X | 11456552..11456734 | 444..626 | 100 | | Plus |
BS12624.pep Sequence
Translation from 16 to 627
> BS12624.pep
MQPVRFGSPWIMAIGLVLLLLAFVSAGKSRQRSPANCPTIKLKRQWGGKP
SLGLHYQVRPIRYVVIHHTVTGECSGLLKCAEILQNMQAYHQNELDFNDI
SYNFLIGNDGIVYEGTGWGLRGAHTYGYNAIGTGIAFIGNFVDKLPSDAA
LQAAKDLLACGVQQGELSEDYALIAGSQVISTQSPGLTLYNEIQEWPHWL
SNP*
BS12624.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SA-PB | 203 | CG11709-PB | 1..203 | 1..203 | 1084 | 100 | Plus |
PGRP-SA-PA | 203 | CG11709-PA | 1..203 | 1..203 | 1084 | 100 | Plus |
PGRP-LE-PB | 345 | CG8995-PB | 198..337 | 60..199 | 358 | 49.3 | Plus |
PGRP-LE-PA | 345 | CG8995-PA | 198..337 | 60..199 | 358 | 49.3 | Plus |
PGRP-SC2-PA | 184 | CG14745-PA | 22..182 | 39..199 | 356 | 42.9 | Plus |