Clone Sequence Records
BS12627.3prime Sequence
948 bp (752 high quality bases) assembled on 2006-10-13
> BS12627.3prime
ATGGTCTAGAAAGCTTCTAAGGCTTTTCACGTTGCATCGTCTTCCAGATG
GCGTTCATTCGCATGTGCCCTTCTCGCAGATGGTTCAACAAGGCTTCAAC
GGTCCCTTCGACTGACTTGCCAGCTCCAGATCTCCTGCAAGAGGCAATGT
GTCGTTCGTAGCGCCATTTGCTCCTAAAGACTCTGTCACAGTGCTCGCAC
ACAGCTTGCTCGCCCTGATCGTCCTCGGATCCGGCGTCATCCGCCATGGC
CGCTTGACCGGACTTGTTGGGACTGGCCCACATGGGCTCCGGCTTAATAA
GCAGCTGCGTCTTGTTTTTACGCTGCAGCTCCTCCTGGTGGTTGTAGCGA
ATGTGATTGAGGATCTTTGAGGTGCTGGTCTTGGTGCGATCGCAGAGTGT
GCACTTGAGGTACGACCGGTAGGGCAGATGCTTGAAGCAGTGCTTCTGCA
GTTGTGAGCGCACGGTCGTTGGTTGCACCTCACGGCACTGCAGGCACATG
GCCTTGCGCCCGGACTCCAGGATCTTAAAACTGTTCTCGATTATGTGCTC
GAAGTCGTGCTTCTTGAATACGTGTGCCCGCCAACCGTCCATCGAGGCGA
TTTCCTTGCCGCACTTCGGACACAAGTACGATATGAGCTTCGTGAGGCCG
TTGGTGGACATTTCCGTGTCTGAGTCGCGGCTGGGCGTCGTAGAGATGCG
TCGACGCTTAGTCGGTTGACTTATTGGGTCCGACTTCATTTCCTTCTTCA
GCTGGGCCACTTCCTCCTTGCCGAGTGCATCGATCTCGATGATGACCACC
TCCTGATTTCCTTGCTGCAGGTGCGCATCGTCTTGCTGCTGCTCCTCATT
AGCTTCTCCTTTGCCGGCGGAAGGGGCATCATCAAAAAACTCCTTGCAGA
GCGCATCCAATTCGTCGTCTTACTTCGGCACCACCTCTTTCCTCTCCT
BS12627.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-PA | 1632 | CG1024-RA | 708..1632 | 941..17 | 4525 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-RB | 1870 | CG1024-RB | 865..1796 | 948..17 | 4570 | 99.4 | Minus |
| CG1024-RE | 2506 | CG1024-RE | 744..1675 | 948..17 | 4570 | 99.4 | Minus |
| CG1024-RD | 2570 | CG1024-RD | 744..1675 | 948..17 | 4570 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6378470..6379401 | 17..948 | 4570 | 99.4 | Plus |
Blast to na_te.dros performed 2015-02-08 11:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 819..898 | 488..405 | 113 | 63.1 | Minus |
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 9336..9415 | 488..405 | 113 | 63.1 | Minus |
BS12627.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:40 Download gff for
BS12627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-PA | 701..1632 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:24 Download gff for
BS12627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 744..1675 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:23 Download gff for
BS12627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 744..1675 | 17..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:23 Download gff for
BS12627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6378470..6379401 | 17..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:24 Download gff for
BS12627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2204192..2205123 | 17..948 | 99 | | Plus |
BS12627.5prime Sequence
860 bp (818 high quality bases) assembled on 2006-10-13
> BS12627.5prime
GAAGTTATCAGTCGACATGTTAGGGAAAATGTCGCGGAACGTGACGCTCT
CGGATGAACAAAGTCGGCTTAATGCGCGTCTGGAGGCGCACATGGTTTAC
ATATGTCCGGAATGCGGCAAGGCGTTCCGCACTCAGGCGGAGTGGCGACA
GCATCTGAACACGAAACACGACTATCTAAAGAAGACGTACTCAGATTTCA
ACTTCATCCAGATCGACGAGCGATTCCATGAGTGCCAGCTGTGCTTCAAA
TGGGTGGAGAATGCCCACAAGACAATCGCCCTCCTGCAGTACCACTACTT
TATGCATCTGGAGCACAGTGAAACCTACCGCTGCGTGCACTGCCGCATGG
CGTACACGAGGCGCCGGGCTCTGAACGTCCACCTACTGGACACGCACATG
CGGGAGATCGAGAAGTACGAGAACAAGCTGCGCCAGATGAAGCGGCAGCA
GGCGAAACCCACTACAGCGGCCGCACCAGCTGGAAATGCAGAGAAGCCGA
TGGCTGTGAAGCCGCGTGGGCGTCCCAAAGGTTCCACGAACAGAAAGCAA
AATGATCTGCTGCAAAAGGCGCTGATGGACATTGATCTGAACACAGAAAT
GGAAAAGTCCCCAGTGACAGCACTAGCGGCTCCTGTAAACGAACCTAAGC
CCATTTCAAATGTCAGCGAGCTGAATCTAGATCGGTGTTTGAATGCCTAC
GAGGACATCGTGCGCAAGGAGGAGAAAGAGGTGGTGCCGAAGTATGACGA
CGAGTTGGATGCGCTCTGCAAGGAGTTTTTTGATGATGGCCCCTCCGCCG
GCAAAGGAGAAGCTAATGAGGAGCAGCAGCAAGACGATGCGCACCTGCAG
CAAGGAAATC
BS12627.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-PA | 1632 | CG1024-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-RB | 1870 | CG1024-RB | 165..1008 | 17..860 | 4220 | 100 | Plus |
| CG1024-RE | 2506 | CG1024-RE | 44..887 | 17..860 | 4220 | 100 | Plus |
| CG1024-RD | 2570 | CG1024-RD | 44..887 | 17..860 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6379258..6379955 | 860..163 | 3490 | 100 | Minus |
| 3R | 32079331 | 3R | 6380018..6380164 | 163..17 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:09:47 has no hits.
BS12627.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:41 Download gff for
BS12627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:16 Download gff for
BS12627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 44..887 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:44 Download gff for
BS12627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 44..887 | 17..860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:44 Download gff for
BS12627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6379258..6379954 | 164..860 | 100 | <- | Minus |
| 3R | 6380018..6380164 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:16 Download gff for
BS12627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2204980..2205676 | 164..860 | 100 | <- | Minus |
| arm_3R | 2205740..2205886 | 17..163 | 100 | | Minus |
BS12627.complete Sequence
1664 bp assembled on 2006-11-01
GenBank Submission: FJ637236
> BS12627.complete
GAAGTTATCAGTCGACATGTTAGGGAAAATGTCGCGGAACGTGACGCTCT
CGGATGAACAAAGTCGGCTTAATGCGCGTCTGGAGGCGCACATGGTTTAC
ATATGTCCGGAATGCGGCAAGGCGTTCCGCACTCAGGCGGAGTGGCGACA
GCATCTGAACACGAAACACGACTATCTAAAGAAGACGTACTCAGATTTCA
ACTTCATCCAGATCGACGAGCGATTCCATGAGTGCCAGCTGTGCTTCAAA
TGGGTGGAGAATGCCCACAAGACAATCGCCCTCCTGCAGTACCACTACTT
TATGCATCTGGAGCACAGTGAAACCTACCGCTGCGTGCACTGCCGCATGG
CGTACACGAGGCGCCGGGCTCTGAACGTCCACCTACTGGACACGCACATG
CGGGAGATCGAGAAGTACGAGAACAAGCTGCGCCAGATGAAGCGGCAGCA
GGCGAAACCCACTACAGCGGCCGCACCAGCTGGAAATGCAGAGAAGCCGA
TGGCTGTGAAGCCGCGTGGGCGTCCCAAAGGTTCCACGAACAGAAAGCAA
AATGATCTGCTGCAAAAGGCGCTGATGGACATTGATCTGAACACAGAAAT
GGAAAAGTCCCCAGTGACAGCACTAGCGGCTCCTGTAAACGAACCTAAGC
CCATTTCAAATGTCAGCGAGCTGAATCTAGATCGGTGTTTGAATGCCTAC
GAGGACATCGTGCGCAAGGAGGAGAAAGAGGTGGTGCCGAAGTATGACGA
CGAGTTGGATGCGCTCTGCAAGGAGTTTTTTGATGATGGCCCCTCCGCCG
GCAAAGGAGAAGCTAATGAGGAGCAGCAGCAAGACGATGCGCACCTGCAG
CAAGGAAATCAGGAGGTGGTCATCATCGAGATCGATGCACTCGGCAAGGA
GGAAGTGGCCCAGCTGAAGAAGGAAATGAAGTCGGACCCAATAAGTCAAC
CGACTAAGCGTCGACGCATCTCTACGACGCCCAGCCGCGACTCAGACACG
GAAATGTCCACCAACGGCCTCACGAAGCTCATATCGTACTTGTGTCCGAA
GTGCGGCAAGGAAATCGCCTCGATGGACGGTTGGCGGGCACACGTATTCA
AGAAGCACGACTTCGAGCACATAATCGAGAACAGTTTTAAGATCCTGGAG
TCCGGGCGCAAGGCCATGTGCCTGCAGTGCCGTGAGGTGCAACCAACGAC
CGTGCGCTCACAACTGCAGAAGCACTGCTTCAAGCATCTGCCCTACCGGT
CGTACCTCAAGTGCACACTCTGCGATCGCACCAAGACCAGCACCTCAAAG
ATCCTCAATCACATTCGCTACAACCACCAGGAGGAGCTGCAGCGTAAAAA
CAAGACGCAGCTGCTTATTAAGCCGGAGCCCATGTGGGCCAGTCCCAACA
AGTCCGGTCAAGCGGCCATGGCGGATGACGCCGGATCCGAGGACGATCAG
GGCGAGCAAGCTGTGTGCGAGCACTGTGACAGAGTCTTTAGGAGCAAATG
GCGCTACGAACGACACATTGCCTCTTGCAGGAGATCTGGAGCTGGCAAGT
CAGTCGAAGGGACCGTTGAAGCCTTGTTGAACCATCTGCGAGAAGGGCAC
ATGCGAATGAACGCCATCTGGAAGACGATGCAACGTGAAAAGCCTTAGAA
GCTTTCTAGACCAT
BS12627.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-RE | 1632 | CG1024-PE | 1..1632 | 17..1648 | 8160 | 100 | Plus |
| CG1024-RD | 1632 | CG1024-PD | 1..1632 | 17..1648 | 8160 | 100 | Plus |
| CG1024-RB | 1620 | CG1024-PB | 1..1620 | 29..1648 | 8100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-RB | 1870 | CG1024-RB | 165..1796 | 17..1648 | 8160 | 100 | Plus |
| CG1024-RE | 2506 | CG1024-RE | 44..1675 | 17..1648 | 8160 | 100 | Plus |
| CG1024-RD | 2570 | CG1024-RD | 44..1675 | 17..1648 | 8160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6378470..6379955 | 1648..163 | 7430 | 100 | Minus |
| 3R | 32079331 | 3R | 6380018..6380164 | 163..17 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:58:32 has no hits.
BS12627.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:38 Download gff for
BS12627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RC | 1..1620 | 29..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:01 Download gff for
BS12627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RC | 44..1675 | 17..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:15 Download gff for
BS12627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 49..1675 | 22..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:38 Download gff for
BS12627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RC | 44..1675 | 17..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:30 Download gff for
BS12627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 49..1675 | 22..1648 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:30 Download gff for
BS12627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6378470..6379954 | 164..1648 | 100 | <- | Minus |
| 3R | 6380018..6380159 | 22..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:15 Download gff for
BS12627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2204192..2205676 | 164..1648 | 100 | <- | Minus |
| arm_3R | 2205740..2205881 | 22..163 | 100 | | Minus |
BS12627.pep Sequence
Translation from 16 to 1647
> BS12627.pep
MLGKMSRNVTLSDEQSRLNARLEAHMVYICPECGKAFRTQAEWRQHLNTK
HDYLKKTYSDFNFIQIDERFHECQLCFKWVENAHKTIALLQYHYFMHLEH
SETYRCVHCRMAYTRRRALNVHLLDTHMREIEKYENKLRQMKRQQAKPTT
AAAPAGNAEKPMAVKPRGRPKGSTNRKQNDLLQKALMDIDLNTEMEKSPV
TALAAPVNEPKPISNVSELNLDRCLNAYEDIVRKEEKEVVPKYDDELDAL
CKEFFDDGPSAGKGEANEEQQQDDAHLQQGNQEVVIIEIDALGKEEVAQL
KKEMKSDPISQPTKRRRISTTPSRDSDTEMSTNGLTKLISYLCPKCGKEI
ASMDGWRAHVFKKHDFEHIIENSFKILESGRKAMCLQCREVQPTTVRSQL
QKHCFKHLPYRSYLKCTLCDRTKTSTSKILNHIRYNHQEELQRKNKTQLL
IKPEPMWASPNKSGQAAMADDAGSEDDQGEQAVCEHCDRVFRSKWRYERH
IASCRRSGAGKSVEGTVEALLNHLREGHMRMNAIWKTMQREKP*
BS12627.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-PE | 543 | CG1024-PE | 1..543 | 1..543 | 2896 | 100 | Plus |
| CG1024-PD | 543 | CG1024-PD | 1..543 | 1..543 | 2896 | 100 | Plus |
| CG1024-PB | 539 | CG1024-PB | 1..539 | 5..543 | 2876 | 100 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 746..1177 | 22..437 | 232 | 22.5 | Plus |
| CG6791-PA | 1112 | CG6791-PA | 752..847 | 341..437 | 173 | 35.1 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 512..617 | 339..444 | 172 | 29.9 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 160..263 | 23..131 | 168 | 37.6 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 261..472 | 245..488 | 168 | 23.9 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 509..610 | 23..127 | 168 | 37.1 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 327..446 | 10..127 | 165 | 34.4 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 926..1038 | 10..123 | 163 | 33.6 | Plus |
