Clone Sequence Records
BS12628.3prime Sequence
693 bp (693 high quality bases) assembled on 2006-10-13
> BS12628.3prime
ATGGTCTAGAAAGCTTTTAATATAAACCTTCTGGCGGAAACATAGACTCA
ATGTTGTGGCAGTACGCCACCAGTGATCTGTCCTTGTCATCCGGGAATAT
TTTACCCAAAAACTCGAGCAATCCAGGCTGATTCTGTACAATTTCGGCGT
ACTCTTCAAACGCTATCACCCCATCCTTGTCAGTGTCGAATTTTCCGAAT
ATGAACTCGCACATGTCCGCTCGCAATTCGTTGACCTCGTCGTCGTCATC
GCCAGTGAAGAATTGTTCAATGGCCACGCCGACCACCTCGCGATTCAGAA
CCACAGCACCACCGCTTGTATAAACCTCAAATGCGAACTTCATTCGCTCC
TGCAGACTTCCGTTGAAGAACACACAGAACAGCCGCATCCAGGCTTCTGG
AGAGACTGATCGGCCATCCTGCGTGATATTCATCGAAATCCGGTCGATGA
TGGTCACGTCGAAGATCCCAAAGCTGACGAGGAATAGATTGTACAGCTGG
CTGGTGGACATCATGCGGGACCTGTTGTTCAGGGCGTACTTGTAAAACAC
GATCAGCAAGCTGACCACTTCGTTGGTGGAAAACTCCGTGGAGGCAGCGA
AGCTCTTGATCAAAGTACTGTACATGGTGAGGAACTTGTTGTTGGCCATG
TCGTCCAGGGTAAGGTCGATGCGGTTCATGTCGACTGATAACT
BS12628.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15179-PA | 663 | CG15179-RA | 1..663 | 679..17 | 3315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sunz-RA | 921 | CG15179-RA | 95..760 | 679..14 | 3330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6630245..6630600 | 679..324 | 1780 | 100 | Minus |
3R | 32079331 | 3R | 6630819..6631023 | 218..14 | 1025 | 100 | Minus |
3R | 32079331 | 3R | 6630652..6630762 | 327..217 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:33:13 has no hits.
BS12628.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:41 Download gff for
BS12628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15179-PA | 1..663 | 17..679 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:49 Download gff for
BS12628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 91..760 | 14..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:57 Download gff for
BS12628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 91..760 | 14..687 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:57 Download gff for
BS12628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6630241..6630598 | 326..687 | 98 | -> | Minus |
3R | 6630654..6630761 | 218..325 | 100 | -> | Minus |
3R | 6630820..6631023 | 14..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:49 Download gff for
BS12628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2455963..2456320 | 326..687 | 98 | -> | Minus |
arm_3R | 2456376..2456483 | 218..325 | 100 | -> | Minus |
arm_3R | 2456542..2456745 | 14..217 | 100 | | Minus |
BS12628.5prime Sequence
693 bp (693 high quality bases) assembled on 2006-10-13
> BS12628.5prime
GAAGTTATCAGTCGACATGAACCGCATCGACCTTACCCTGGACGACATGG
CCAACAACAAGTTCCTCACCATGTACAGTACTTTGATCAAGAGCTTCGCT
GCCTCCACGGAGTTTTCCACCAACGAAGTGGTCAGCTTGCTGATCGTGTT
TTACAAGTACGCCCTGAACAACAGGTCCCGCATGATGTCCACCAGCCAGC
TGTACAATCTATTCCTCGTCAGCTTTGGGATCTTCGACGTGACCATCATC
GACCGGATTTCGATGAATATCACGCAGGATGGCCGATCAGTCTCTCCAGA
AGCCTGGATGCGGCTGTTCTGTGTGTTCTTCAACGGAAGTCTGCAGGAGC
GAATGAAGTTCGCATTTGAGGTTTATACAAGCGGTGGTGCTGTGGTTCTG
AATCGCGAGGTGGTCGGCGTGGCCATTGAACAATTCTTCACTGGCGATGA
CGACGACGAGGTCAACGAATTGCGAGCGGACATGTGCGAGTTCATATTCG
GAAAATTCGACACTGACAAGGATGGGGTGATAGCGTTTGAAGAGTACGCC
GAAATTGTACAGAATCAGCCTGGATTGCTCGAGTTTTTGGGTAAAATATT
CCCGGATGACAAGGACAGATCACTGGTGGCGTACTGCCACAACATTGAGT
CTATGTTTCCGCCAGAAGGTTTATATTAAAAGCTTTCTAGACC
BS12628.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15179-PA | 663 | CG15179-RA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sunz-RA | 921 | CG15179-RA | 95..760 | 17..682 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6630245..6630600 | 17..372 | 1780 | 100 | Plus |
3R | 32079331 | 3R | 6630819..6631023 | 478..682 | 1025 | 100 | Plus |
3R | 32079331 | 3R | 6630652..6630762 | 369..479 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:08:50 has no hits.
BS12628.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:42 Download gff for
BS12628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15179-PA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:51 Download gff for
BS12628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 91..760 | 9..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:09 Download gff for
BS12628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 91..760 | 9..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:09 Download gff for
BS12628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6630241..6630598 | 9..370 | 98 | -> | Plus |
3R | 6630654..6630761 | 371..478 | 100 | -> | Plus |
3R | 6630820..6631023 | 479..682 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:51 Download gff for
BS12628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2455963..2456320 | 9..370 | 98 | -> | Plus |
arm_3R | 2456376..2456483 | 371..478 | 100 | -> | Plus |
arm_3R | 2456542..2456745 | 479..682 | 100 | | Plus |
BS12628.complete Sequence
695 bp assembled on 2006-11-01
GenBank Submission: FJ637237
> BS12628.complete
GAAGTTATCAGTCGACATGAACCGCATCGACCTTACCCTGGACGACATGG
CCAACAACAAGTTCCTCACCATGTACAGTACTTTGATCAAGAGCTTCGCT
GCCTCCACGGAGTTTTCCACCAACGAAGTGGTCAGCTTGCTGATCGTGTT
TTACAAGTACGCCCTGAACAACAGGTCCCGCATGATGTCCACCAGCCAGC
TGTACAATCTATTCCTCGTCAGCTTTGGGATCTTCGACGTGACCATCATC
GACCGGATTTCGATGAATATCACGCAGGATGGCCGATCAGTCTCTCCAGA
AGCCTGGATGCGGCTGTTCTGTGTGTTCTTCAACGGAAGTCTGCAGGAGC
GAATGAAGTTCGCATTTGAGGTTTATACAAGCGGTGGTGCTGTGGTTCTG
AATCGCGAGGTGGTCGGCGTGGCCATTGAACAATTCTTCACTGGCGATGA
CGACGACGAGGTCAACGAATTGCGAGCGGACATGTGCGAGTTCATATTCG
GAAAATTCGACACTGACAAGGATGGGGTGATAGCGTTTGAAGAGTACGCC
GAAATTGTACAGAATCAGCCTGGATTGCTCGAGTTTTTGGGTAAAATATT
CCCGGATGACAAGGACAGATCACTGGTGGCGTACTGCCACAACATTGAGT
CTATGTTTCCGCCAGAAGGTTTATATTAAAAGCTTTCTAGACCAT
BS12628.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sunz-RA | 663 | CG15179-PA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sunz-RA | 921 | CG15179-RA | 95..760 | 17..682 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6630245..6630600 | 17..372 | 1780 | 100 | Plus |
3R | 32079331 | 3R | 6630819..6631023 | 478..682 | 1025 | 100 | Plus |
3R | 32079331 | 3R | 6630652..6630762 | 369..479 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:20:20 has no hits.
BS12628.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:40 Download gff for
BS12628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:03 Download gff for
BS12628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 72..741 | 9..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:46 Download gff for
BS12628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 95..755 | 17..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:40 Download gff for
BS12628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 92..761 | 9..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:19 Download gff for
BS12628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 95..755 | 17..677 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:19 Download gff for
BS12628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6630245..6630598 | 17..370 | 100 | -> | Plus |
3R | 6630654..6630761 | 371..478 | 100 | -> | Plus |
3R | 6630820..6631018 | 479..677 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:46 Download gff for
BS12628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2455967..2456320 | 17..370 | 100 | -> | Plus |
arm_3R | 2456376..2456483 | 371..478 | 100 | -> | Plus |
arm_3R | 2456542..2456740 | 479..677 | 100 | | Plus |
BS12628.pep Sequence
Translation from 16 to 678
> BS12628.pep
MNRIDLTLDDMANNKFLTMYSTLIKSFAASTEFSTNEVVSLLIVFYKYAL
NNRSRMMSTSQLYNLFLVSFGIFDVTIIDRISMNITQDGRSVSPEAWMRL
FCVFFNGSLQERMKFAFEVYTSGGAVVLNREVVGVAIEQFFTGDDDDEVN
ELRADMCEFIFGKFDTDKDGVIAFEEYAEIVQNQPGLLEFLGKIFPDDKD
RSLVAYCHNIESMFPPEGLY*
BS12628.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sunz-PA | 220 | CG15179-PA | 1..220 | 1..220 | 1132 | 100 | Plus |
sowi-PA | 217 | CG15178-PA | 1..213 | 1..211 | 529 | 45.1 | Plus |
CG15177-PA | 225 | CG15177-PA | 1..216 | 1..213 | 507 | 47.2 | Plus |
CG15177-PB | 217 | CG15177-PB | 1..208 | 1..213 | 465 | 44.9 | Plus |
d-cup-PA | 219 | CG14387-PA | 2..217 | 3..218 | 426 | 39.4 | Plus |