Clone BS12628 Report

Search the DGRC for BS12628

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:28
Vector:pDNR-Dual
Associated Gene/Transcriptsunz-RA
Protein status:BS12628.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12628.3prime Sequence

693 bp (693 high quality bases) assembled on 2006-10-13

> BS12628.3prime
ATGGTCTAGAAAGCTTTTAATATAAACCTTCTGGCGGAAACATAGACTCA
ATGTTGTGGCAGTACGCCACCAGTGATCTGTCCTTGTCATCCGGGAATAT
TTTACCCAAAAACTCGAGCAATCCAGGCTGATTCTGTACAATTTCGGCGT
ACTCTTCAAACGCTATCACCCCATCCTTGTCAGTGTCGAATTTTCCGAAT
ATGAACTCGCACATGTCCGCTCGCAATTCGTTGACCTCGTCGTCGTCATC
GCCAGTGAAGAATTGTTCAATGGCCACGCCGACCACCTCGCGATTCAGAA
CCACAGCACCACCGCTTGTATAAACCTCAAATGCGAACTTCATTCGCTCC
TGCAGACTTCCGTTGAAGAACACACAGAACAGCCGCATCCAGGCTTCTGG
AGAGACTGATCGGCCATCCTGCGTGATATTCATCGAAATCCGGTCGATGA
TGGTCACGTCGAAGATCCCAAAGCTGACGAGGAATAGATTGTACAGCTGG
CTGGTGGACATCATGCGGGACCTGTTGTTCAGGGCGTACTTGTAAAACAC
GATCAGCAAGCTGACCACTTCGTTGGTGGAAAACTCCGTGGAGGCAGCGA
AGCTCTTGATCAAAGTACTGTACATGGTGAGGAACTTGTTGTTGGCCATG
TCGTCCAGGGTAAGGTCGATGCGGTTCATGTCGACTGATAACT

BS12628.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15179-PA 663 CG15179-RA 1..663 679..17 3315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
sunz-RA 921 CG15179-RA 95..760 679..14 3330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6630245..6630600 679..324 1780 100 Minus
3R 32079331 3R 6630819..6631023 218..14 1025 100 Minus
3R 32079331 3R 6630652..6630762 327..217 555 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:33:13 has no hits.

BS12628.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:41 Download gff for BS12628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15179-PA 1..663 17..679 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:49 Download gff for BS12628.3prime
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 91..760 14..687 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:57 Download gff for BS12628.3prime
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 91..760 14..687 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:57 Download gff for BS12628.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6630241..6630598 326..687 98 -> Minus
3R 6630654..6630761 218..325 100 -> Minus
3R 6630820..6631023 14..217 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:49 Download gff for BS12628.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2455963..2456320 326..687 98 -> Minus
arm_3R 2456376..2456483 218..325 100 -> Minus
arm_3R 2456542..2456745 14..217 100   Minus

BS12628.5prime Sequence

693 bp (693 high quality bases) assembled on 2006-10-13

> BS12628.5prime
GAAGTTATCAGTCGACATGAACCGCATCGACCTTACCCTGGACGACATGG
CCAACAACAAGTTCCTCACCATGTACAGTACTTTGATCAAGAGCTTCGCT
GCCTCCACGGAGTTTTCCACCAACGAAGTGGTCAGCTTGCTGATCGTGTT
TTACAAGTACGCCCTGAACAACAGGTCCCGCATGATGTCCACCAGCCAGC
TGTACAATCTATTCCTCGTCAGCTTTGGGATCTTCGACGTGACCATCATC
GACCGGATTTCGATGAATATCACGCAGGATGGCCGATCAGTCTCTCCAGA
AGCCTGGATGCGGCTGTTCTGTGTGTTCTTCAACGGAAGTCTGCAGGAGC
GAATGAAGTTCGCATTTGAGGTTTATACAAGCGGTGGTGCTGTGGTTCTG
AATCGCGAGGTGGTCGGCGTGGCCATTGAACAATTCTTCACTGGCGATGA
CGACGACGAGGTCAACGAATTGCGAGCGGACATGTGCGAGTTCATATTCG
GAAAATTCGACACTGACAAGGATGGGGTGATAGCGTTTGAAGAGTACGCC
GAAATTGTACAGAATCAGCCTGGATTGCTCGAGTTTTTGGGTAAAATATT
CCCGGATGACAAGGACAGATCACTGGTGGCGTACTGCCACAACATTGAGT
CTATGTTTCCGCCAGAAGGTTTATATTAAAAGCTTTCTAGACC

BS12628.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15179-PA 663 CG15179-RA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
sunz-RA 921 CG15179-RA 95..760 17..682 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6630245..6630600 17..372 1780 100 Plus
3R 32079331 3R 6630819..6631023 478..682 1025 100 Plus
3R 32079331 3R 6630652..6630762 369..479 555 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:08:50 has no hits.

BS12628.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:42 Download gff for BS12628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15179-PA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:51 Download gff for BS12628.5prime
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 91..760 9..682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:09 Download gff for BS12628.5prime
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 91..760 9..682 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:09 Download gff for BS12628.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6630241..6630598 9..370 98 -> Plus
3R 6630654..6630761 371..478 100 -> Plus
3R 6630820..6631023 479..682 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:51 Download gff for BS12628.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2455963..2456320 9..370 98 -> Plus
arm_3R 2456376..2456483 371..478 100 -> Plus
arm_3R 2456542..2456745 479..682 100   Plus

BS12628.complete Sequence

695 bp assembled on 2006-11-01

GenBank Submission: FJ637237

> BS12628.complete
GAAGTTATCAGTCGACATGAACCGCATCGACCTTACCCTGGACGACATGG
CCAACAACAAGTTCCTCACCATGTACAGTACTTTGATCAAGAGCTTCGCT
GCCTCCACGGAGTTTTCCACCAACGAAGTGGTCAGCTTGCTGATCGTGTT
TTACAAGTACGCCCTGAACAACAGGTCCCGCATGATGTCCACCAGCCAGC
TGTACAATCTATTCCTCGTCAGCTTTGGGATCTTCGACGTGACCATCATC
GACCGGATTTCGATGAATATCACGCAGGATGGCCGATCAGTCTCTCCAGA
AGCCTGGATGCGGCTGTTCTGTGTGTTCTTCAACGGAAGTCTGCAGGAGC
GAATGAAGTTCGCATTTGAGGTTTATACAAGCGGTGGTGCTGTGGTTCTG
AATCGCGAGGTGGTCGGCGTGGCCATTGAACAATTCTTCACTGGCGATGA
CGACGACGAGGTCAACGAATTGCGAGCGGACATGTGCGAGTTCATATTCG
GAAAATTCGACACTGACAAGGATGGGGTGATAGCGTTTGAAGAGTACGCC
GAAATTGTACAGAATCAGCCTGGATTGCTCGAGTTTTTGGGTAAAATATT
CCCGGATGACAAGGACAGATCACTGGTGGCGTACTGCCACAACATTGAGT
CTATGTTTCCGCCAGAAGGTTTATATTAAAAGCTTTCTAGACCAT

BS12628.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
sunz-RA 663 CG15179-PA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
sunz-RA 921 CG15179-RA 95..760 17..682 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6630245..6630600 17..372 1780 100 Plus
3R 32079331 3R 6630819..6631023 478..682 1025 100 Plus
3R 32079331 3R 6630652..6630762 369..479 555 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:20:20 has no hits.

BS12628.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:40 Download gff for BS12628.complete
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:03 Download gff for BS12628.complete
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 72..741 9..682 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:46 Download gff for BS12628.complete
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 95..755 17..677 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:40 Download gff for BS12628.complete
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 92..761 9..682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:19 Download gff for BS12628.complete
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 95..755 17..677 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:19 Download gff for BS12628.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6630245..6630598 17..370 100 -> Plus
3R 6630654..6630761 371..478 100 -> Plus
3R 6630820..6631018 479..677 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:46 Download gff for BS12628.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2455967..2456320 17..370 100 -> Plus
arm_3R 2456376..2456483 371..478 100 -> Plus
arm_3R 2456542..2456740 479..677 100   Plus

BS12628.pep Sequence

Translation from 16 to 678

> BS12628.pep
MNRIDLTLDDMANNKFLTMYSTLIKSFAASTEFSTNEVVSLLIVFYKYAL
NNRSRMMSTSQLYNLFLVSFGIFDVTIIDRISMNITQDGRSVSPEAWMRL
FCVFFNGSLQERMKFAFEVYTSGGAVVLNREVVGVAIEQFFTGDDDDEVN
ELRADMCEFIFGKFDTDKDGVIAFEEYAEIVQNQPGLLEFLGKIFPDDKD
RSLVAYCHNIESMFPPEGLY*

BS12628.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
sunz-PA 220 CG15179-PA 1..220 1..220 1132 100 Plus
sowi-PA 217 CG15178-PA 1..213 1..211 529 45.1 Plus
CG15177-PA 225 CG15177-PA 1..216 1..213 507 47.2 Plus
CG15177-PB 217 CG15177-PB 1..208 1..213 465 44.9 Plus
d-cup-PA 219 CG14387-PA 2..217 3..218 426 39.4 Plus