Clone Sequence Records
BS12629.3prime Sequence
882 bp (741 high quality bases) assembled on 2006-10-13
> BS12629.3prime
ATGGTCTAGAAAGCTTTTATACATGGTCCACCAAAAACTGCCCAAATCGC
ACCATAGTTGAGAGTGGGTGAATCATATAGACGAACAGCATGGCCAGAAC
GGTGGCCTGCAGGACATATTCGGTGCGATCCGTATGCTCAAATCTTCGCT
GGTGGATAACGGTGATGGTGAAGAGGATGAGACTAGCCACGTAGATCAGA
CTGACCATCGAGACGTATCGCATTATATAGCGATTGCCGTTTAGATACAC
AATCAAGTAGATCGAAACGACAATCGCTATGCAACAGAATGTGAGGACGA
TCATGAAGATGCTACCGGGCAGTATTTTCAGCGGCAGATAGACGCCCATC
AAGTAGAGCATGACGTTCAGGGCCAGCACGAGTGACAGGACACCAGTCAT
CCAGAGCATCGATAGACGCGCCCACCGGTGGCAATTCACAAATATCACTA
TCACCTCCACGATGACAATGGCCAGCAGACCATTGCACGGACACTGGTTG
GCCAGGTACACGTAGGCCATGATCAGCACACATCCCACGGCCAGGAGCAG
CCACACGAAGCTGGGCACCGATGGGCTAATTAGCTCCCCGAAGTCCTTAT
TGCAGAGCCGCAGGACCACAAGCTGAATTACTGCACTTGCCGATAGAACC
GCGTGGATCAAGTAGACCCAACCGAGGTGTTTCTTCCTCAGGTGCACAGA
AGAGCGTTGGCGCAAAGGACCCGACGATGCGACCGGGCTCAGCAGGCCCG
GGGATTCTCCATATGGTTTCGCAGGCTCATGCGGTGGTGGAGCAGGAGCG
GGAACATGAGGTGGTGGCCTGGGTGGAAGTGTTGATCTTTGACCAGTCGG
TTTGCGTAGACCCGTCGATGACCGTGGCGTGG
BS12629.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-PA | 882 | CG4073-RA | 17..882 | 882..17 | 4230 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-RA | 1104 | CG4073-RA | 150..1015 | 882..17 | 4270 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10714947..10715812 | 882..17 | 4270 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:43:35 has no hits.
BS12629.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:42 Download gff for
BS12629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-PA | 17..882 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:25 Download gff for
BS12629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 150..1015 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:31 Download gff for
BS12629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 150..1015 | 17..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:31 Download gff for
BS12629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10714947..10715812 | 17..882 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:25 Download gff for
BS12629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6540669..6541534 | 17..882 | 99 | | Minus |
BS12629.5prime Sequence
841 bp (781 high quality bases) assembled on 2006-10-13
> BS12629.5prime
GAAGTTATCAGTCGACATGAGCAGGCCAAATCCCACGCCACGTTCATCGA
CGGGTCTACGCAAACCGACTGGTCAAAGATCAACACCTCCACCCAGGCCA
CCACCTCATGTTCCCGCTCCTGCTCCACCACCGCATGAGCCTGCGAAACC
ATATGGAGAATCCCCGGGCCTGCTGAGCCCGGTCGCATCGTCGGGTCCTT
TGCGCCAACGCTCTTCTGTGCACCTGAGGAAGAAACACCTCGGTTGGGTC
TACTTGATCCACGCGGTTCTATCGGCAAGTGCAGTAATTCAGCTTGTGGT
CCTGCGGCTCTGCAATAAGGACTTCGGGGAGCTAATTAGCCCATCGGTGC
CCAGCTTCGTGTGGCTGCTCCTGGCCGTGGGATGTGTGCTGATCATGGCC
TACGTGTACCTGGCCAACCAGTGTCCGTGCAATGGTCTGCTGGCCATTGT
CATCGTGGAGGTGATAGTGATATTTGTGAATTGCCACCGGTGGGCGCGTC
TATCGATGCTCTGGATGACTGGTGTCCTGTCACTCGTGCTGGCCCTGAAC
GTCATGCTCTACTTGATGGGCGTCTATCTGCCGCTGAAAATACTGCCCGG
TAGCATCTTCATGATCGTCCTCACATTCTGTTGCATAGCGATTGTCGTTT
CGATCTACTTGATTGTGTATCTAAACGGCAATCGCTATATAATGCGATAC
GTCTCGATGGTCAGTCTGATCTACGTGGCTAGTCTCATCCTCTTCACCAT
CACCGTTATCCACCAGCGAAGATTTGAGCATACGGATCGCACCGAATATG
TCCTGCAGGCCACCGTTCTGGCCATGCTGTTCGTCTATATG
BS12629.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-PA | 882 | CG4073-RA | 1..825 | 17..841 | 4075 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-RA | 1104 | CG4073-RA | 134..958 | 17..841 | 4095 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10714931..10715755 | 17..841 | 4095 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:23:30 has no hits.
BS12629.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:42 Download gff for
BS12629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:09 Download gff for
BS12629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 127..958 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:03 Download gff for
BS12629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 127..958 | 9..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:03 Download gff for
BS12629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10714924..10715755 | 9..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:09 Download gff for
BS12629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6540646..6541477 | 9..841 | 99 | | Plus |
BS12629.complete Sequence
914 bp assembled on 2006-11-01
GenBank Submission: FJ637238
> BS12629.complete
GAAGTTATCAGTCGACATGAGCAGGCCAAATCCCACGCCACGTTCATCGA
CGGGTCTACGCAAACCGACTGGTCAAAGATCAACACCTCCACCCAGGCCA
CCACCTCATGTTCCCGCTCCTGCTCCACCACCGCATGAGCCTGCGAAACC
ATATGGAGAATCCCCGGGCCTGCTGAGCCCGGTCGCATCGTCGGGTCCTT
TGCGCCAACGCTCTTCTGTGCACCTGAGGAAGAAACACCTCGGTTGGGTC
TACTTGATCCACGCGGTTCTATCGGCAAGTGCAGTAATTCAGCTTGTGGT
CCTGCGGCTCTGCAATAAGGACTTCGGGGAGCTAATTAGCCCATCGGTGC
CCAGCTTCGTGTGGCTGCTCCTGGCCGTGGGATGTGTGCTGATCATGGCC
TACGTGTACCTGGCCAACCAGTGTCCGTGCAATGGTCTGCTGGCCATTGT
CATCGTGGAGGTGATAGTGATATTTGTGAATTGCCACCGGTGGGCGCGTC
TATCGATGCTCTGGATGACTGGTGTCCTGTCACTCGTGCTGGCCCTGAAC
GTCATGCTCTACTTGATGGGCGTCTATCTGCCGCTGAAAATACTGCCCGG
TAGCATCTTCATGATCGTCCTCACATTCTGTTGCATAGCGATTGTCGTTT
CGATCTACTTGATTGTGTATCTAAACGGCAATCGCTATATAATGCGATAC
GTCTCGATGGTCAGTCTGATCTACGTGGCTAGTCTCATCCTCTTCACCAT
CACCGTTATCCACCAGCGAAGATTTGAGCATACGGATCGCACCGAATATG
TCCTGCAGGCCACCGTTCTGGCCATGCTGTTCGTCTATATGATTCACCCA
CTCTCAACTATGGTGCGATTTGGGCAGTTTTTGGTGGACCATGTATAAAA
GCTTTCTAGACCAT
BS12629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-RA | 882 | CG4073-PA | 1..882 | 17..898 | 4380 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-RA | 1104 | CG4073-RA | 134..1015 | 17..898 | 4380 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10714931..10715812 | 17..898 | 4380 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:20:48 has no hits.
BS12629.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:41 Download gff for
BS12629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:05 Download gff for
BS12629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 127..1015 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:44 Download gff for
BS12629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 134..1013 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:41 Download gff for
BS12629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 127..1015 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:46 Download gff for
BS12629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 134..1013 | 17..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:46 Download gff for
BS12629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10714931..10715810 | 17..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:44 Download gff for
BS12629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6540653..6541532 | 17..896 | 99 | | Plus |
BS12629.pep Sequence
Translation from 16 to 897
> BS12629.pep
MSRPNPTPRSSTGLRKPTGQRSTPPPRPPPHVPAPAPPPHEPAKPYGESP
GLLSPVASSGPLRQRSSVHLRKKHLGWVYLIHAVLSASAVIQLVVLRLCN
KDFGELISPSVPSFVWLLLAVGCVLIMAYVYLANQCPCNGLLAIVIVEVI
VIFVNCHRWARLSMLWMTGVLSLVLALNVMLYLMGVYLPLKILPGSIFMI
VLTFCCIAIVVSIYLIVYLNGNRYIMRYVSMVSLIYVASLILFTITVIHQ
RRFEHTDRTEYVLQATVLAMLFVYMIHPLSTMVRFGQFLVDHV*
BS12629.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-PA | 293 | CG4073-PA | 1..293 | 1..293 | 1522 | 100 | Plus |
