Clone Sequence Records
BS12630.3prime Sequence
810 bp (746 high quality bases) assembled on 2006-10-13
> BS12630.3prime
ATGGTCTAGAAAGCTTTCAATCGGTTGGCCCACCATAATCCCCATCGTTT
CGTTCAAGTTCACGTAGAAAACGCTCAACATCCCCAACTTGAGCGGCATT
CAAGGCCTCGCGATTGTCATCACTTTGCAATAGAGGCTCCAGACTCTTTC
TGAGTGCACCAGAATGAAGTCCTACGGAAAAAGAGGACAAGGATTCGTAG
AATTGCGCCGAATGCAAATGCTCCAGTATGTCTGACTGCTCATCCATCGC
CTCATGATCTTTGGGCAATTGGGCCATTAGTTTTTCACGTCTCGATGGGC
AACTTAGAACTTTGTCCACTGCTTCGGCGCCATGTAGGCGTAAAACAGCT
GCCAAATCGAATGTCTGTATACCCGACTCTGATGTATATGTATCTGTATC
TGTATCTGTATTTGCATCGGGATCGGCAAATGGCAAGGGCGGTTCTTCCA
TCGCATCACCAGTTTGCCAATGATTCAAACTCCGGTTAGCTGGTAGCCAA
GTTGCTTGCGTTTCGACCAGCATCTCTTCCAGAATTTGAGGATTCTCACT
GCCACCGAAACCGCGTCGTGCTGTTGTATGATCCGCATCCGTATCCATAT
CGCCCTCGGCCGCCGCAATCTCATCCCTTTGGCGTTCACCACTGGCAATC
AATTCATTGACCCGCTGACAAAATAACGCATCCCCATCCGCCTGCAGCTC
CTGCATCCAGAAAAAGTAACGCTGCGTCGATCGTGTATACTTTAGGACAT
AAACCCGACCGGTTTTGCACTGATCAATGCGACGGAACTCGAGGACGCCC
GGCGTTGCTA
BS12630.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6789-PA | 975 | CG6789-RA | 182..975 | 810..17 | 3945 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13R-RA | 1088 | CG6789-RA | 242..1036 | 810..16 | 3960 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5132139..5132933 | 810..16 | 3960 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:09:44 has no hits.
BS12630.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:43 Download gff for
BS12630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6789-PA | 183..975 | 17..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:59 Download gff for
BS12630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13R-RA | 243..1036 | 16..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:15:42 Download gff for
BS12630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13R-RA | 243..1036 | 16..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:15:42 Download gff for
BS12630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5132140..5132933 | 16..809 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:59 Download gff for
BS12630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5026173..5026966 | 16..809 | 99 | | Minus |
BS12630.5prime Sequence
913 bp (754 high quality bases) assembled on 2006-10-13
> BS12630.5prime
GAAGTTATCAGTCGACATGGCCCAGTCGAATGCACACAATTTGGTCGAGT
ACAAGGCCGGCCGCATGGTCCTTCTAGGCAAGATGGTCGAACCCGATGAC
CGCAAAGGACTGCTCTTTGTGCGCCGATCCGCCGATGATAATCAGCTCCA
TATCCACTGGATGGATCGGCGTTCCGGGTCCGTTGAGCTGGATATTGTAG
CAACGCCGGGCGTCCTCGAGTTCCGTCGCATTGATCAGTGCAAAACCGGT
CGGGTTTATGTCCTAAAGTATACACGATCGACGCAGCGTTACTTTTTCTG
GATGCAGGAGCTGCAGGCGGATGGGGATGCGTTATTTTGTCAGCGGGTCA
ATGAATTGATTGCCAGTGGTGAACGCCAAAGGGATGAGATTGCGGCGGCC
GAGGGCGATATGGATACGGATGCGGATCATACAACAGCACGACGCGGTTT
CGGTGGCAGTGAGAATCCTCAAATTCTGGAAGAGATGCTGGTCGAAACGC
AAGCAACTTGGCTACCAGCTAACCGGAGTTTGAATCATTGGCAAACTGGT
GATGCGATGGAAGAACCGCCCTTGCCATTTGCCGATCCCGATGCAAATAC
AGATACAGATACAGATACATATACATCAGAGTCGGGTATACAGACATTCG
ATTTGGCAGCTGTTTTACGCCTACATGGCGCCGAAGCAGTGGACAAAGTT
CTAAGTTGCCCATCGAGACGTGAAAAACTAATGGCCCAATTGCCCAAAGA
TCATGAGGCGATGGATGAGCAGTCAGACATACTGGAGCATTTGCATTCGG
CGCAATTCTACGAATCCTTGTCCTCTTTTTTCGTANGACTTCATTCTGGT
GCACTCAGAAAGAGTCTGGAGCCTCTATTTGCAAGTGATGAACATCGCGA
GGCCTTGATTGCC
BS12630.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6789-PA | 975 | CG6789-RA | 1..863 | 17..879 | 4271 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13R-RA | 1088 | CG6789-RA | 59..957 | 15..913 | 4379 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5131956..5132854 | 15..913 | 4379 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:09:04 has no hits.
BS12630.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:43 Download gff for
BS12630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6789-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:56 Download gff for
BS12630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13R-RA | 52..957 | 3..913 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:42 Download gff for
BS12630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13R-RA | 52..957 | 3..913 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:42 Download gff for
BS12630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5131949..5132854 | 3..913 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:56 Download gff for
BS12630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5025982..5026887 | 3..913 | 98 | | Plus |
BS12630.complete Sequence
1007 bp assembled on 2006-11-01
GenBank Submission: FJ637239
> BS12630.complete
GAAGTTATCAGTCGACATGGCCCAGTCGAATGCACACAATTTGGTCGAGT
ACAAGGCCGGCCGCATGGTCCTTCTAGGCAAGATGGTCGAACCCGATGAC
CGCAAAGGACTGCTCTTTGTGCGCCGATCCGCCGATGATAATCAGCTCCA
TATCCACTGGATGGATCGGCGTTCCGGGTCCGTTGAGCTGGATATTGTAG
CAACGCCGGGCGTCCTCGAGTTCCGTCGCATTGATCAGTGCAAAACCGGT
CGGGTTTATGTCCTAAAGTATACACGATCGACGCAGCGTTACTTTTTCTG
GATGCAGGAGCTGCAGGCGGATGGGGATGCGTTATTTTGTCAGCGGGTCA
ATGAATTGATTGCCAGTGGTGAACGCCAAAGGGATGAGATTGCGGCGGCC
GAGGGCGATATGGATACGGATGCGGATCATACAACAGCACGACGCGGTTT
CGGTGGCAGTGAGAATCCTCAAATTCTGGAAGAGATGCTGGTCGAAACGC
AAGCAACTTGGCTACCAGCTAACCGGAGTTTGAATCATTGGCAAACTGGT
GATGCGATGGAAGAACCGCCCTTGCCATTTGCCGATCCCGATGCAAATAC
AGATACAGATACAGATACATATACATCAGAGTCGGGTATACAGACATTCG
ATTTGGCAGCTGTTTTACGCCTACATGGCGCCGAAGCAGTGGACAAAGTT
CTAAGTTGCCCATCGAGACGTGAAAAACTAATGGCCCAATTGCCCAAAGA
TCATGAGGCGATGGATGAGCAGTCAGACATACTGGAGCATTTGCATTCGG
CGCAATTCTACGAATCCTTGTCCTCTTTTTCCGTAGGACTTCATTCTGGT
GCACTCAGAAAGAGTCTGGAGCCTCTATTGCAAAGTGATGACAATCGCGA
GGCCTTGAATGCCGCTCAAGTTGGGGATGTTGAGCGTTTTCTACGTGAAC
TTGAACGAAACGATGGGGATTATGGTGGGCCAACCGATTGAAAGCTTTCT
AGACCAT
BS12630.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13R-RA | 975 | CG6789-PA | 1..975 | 17..991 | 4860 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13R-RA | 1088 | CG6789-RA | 59..1036 | 15..992 | 4875 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5131956..5132933 | 15..992 | 4875 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:14:18 has no hits.
BS12630.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:42 Download gff for
BS12630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6789-RA | 1..975 | 17..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:07 Download gff for
BS12630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6789-RA | 52..1036 | 3..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:44 Download gff for
BS12630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13R-RA | 61..1034 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:42 Download gff for
BS12630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6789-RA | 52..1036 | 3..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:19 Download gff for
BS12630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13R-RA | 61..1034 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:19 Download gff for
BS12630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5131958..5132931 | 17..990 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:44 Download gff for
BS12630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5025991..5026964 | 17..990 | 99 | | Plus |
BS12630.pep Sequence
Translation from 16 to 990
> BS12630.pep
MAQSNAHNLVEYKAGRMVLLGKMVEPDDRKGLLFVRRSADDNQLHIHWMD
RRSGSVELDIVATPGVLEFRRIDQCKTGRVYVLKYTRSTQRYFFWMQELQ
ADGDALFCQRVNELIASGERQRDEIAAAEGDMDTDADHTTARRGFGGSEN
PQILEEMLVETQATWLPANRSLNHWQTGDAMEEPPLPFADPDANTDTDTD
TYTSESGIQTFDLAAVLRLHGAEAVDKVLSCPSRREKLMAQLPKDHEAMD
EQSDILEHLHSAQFYESLSSFSVGLHSGALRKSLEPLLQSDDNREALNAA
QVGDVERFLRELERNDGDYGGPTD*
BS12630.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13R-PA | 324 | CG6789-PA | 1..324 | 1..324 | 1689 | 100 | Plus |
| Rpn13-PF | 389 | CG13349-PF | 10..344 | 2..315 | 434 | 32.6 | Plus |
| Rpn13-PB | 389 | CG13349-PB | 10..344 | 2..315 | 434 | 32.6 | Plus |
| Rpn13-PA | 389 | CG13349-PA | 10..344 | 2..315 | 434 | 32.6 | Plus |
| Rpn13-PE | 424 | CG13349-PE | 10..379 | 2..315 | 419 | 31.6 | Plus |
