Clone BS12632 Report

Search the DGRC for BS12632

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG13994-RA
Protein status:BS12632.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12632.3prime Sequence

522 bp (522 high quality bases) assembled on 2006-10-13

> BS12632.3prime
ATGGTCTAGAAAGCTTCTACGAGCTGCCCGTCTGCTCAAAGTCAACACCT
GGGGTAGGTGGTTTTGGATCGGTCTTCGATTCAACAGGCTCGGCTGGCGG
TTGACTGATGTGCGCGGCCTGCGTTGATGTCGAAGGTCCTTCCGGATGCG
ACGCCTCCGTGCATGGTTTGTCCCCGTGATTGTGATTGTGTTTTGCGTTT
CTCTGACGCTTTTCCGGATGTCCAAAGCAGTGCTCACAGTCTTCGTCATC
CTCAGAGGAGCTCTCGCCGAACGCGAGAGGTTTTTTGTAAATGCAGCAGC
ATTTGGACTTCTTGCGATTCAAATGCTCGTTGTCGATGATCCCAGCGTGA
AAGGCCACCCGGCGTTCATTACGCGGATGTTCGAGGCGCAACAGAAGAGT
GGGTGTGGTCCGGCCCGATTCCAATTGAGCACGGGCATCGGTTTCGTCAA
TTATTTCAGTTGTCGAGCCATTGGATGTCTCATTGTTCGTGCTCTGCTTA
TGTGCCATGTCGACTGATAACT

BS12632.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-PA 492 CG13994-RA 1..492 508..17 2410 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-RB 589 CG13994-RB 35..528 508..15 2440 99.6 Minus
CG13994-RA 631 CG13994-RA 35..528 508..15 2440 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6063283..6063568 300..15 1430 100 Minus
2L 23513712 2L 6063023..6063231 508..300 1015 99 Minus
Blast to na_te.dros performed 2015-02-11 09:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3481..3541 220..280 125 67.2 Plus

BS12632.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:45 Download gff for BS12632.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13994-PA 1..492 17..508 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:02 Download gff for BS12632.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 29..534 7..515 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:01 Download gff for BS12632.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 29..534 7..515 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:01 Download gff for BS12632.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6063017..6063230 301..515 97 -> Minus
2L 6063283..6063574 7..300 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:02 Download gff for BS12632.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6063017..6063230 301..515 97 -> Minus
arm_2L 6063283..6063574 7..300 98   Minus

BS12632.5prime Sequence

522 bp (522 high quality bases) assembled on 2006-10-13

> BS12632.5prime
GAAGTTATCAGTCGACATGGCACATAAGCAGAGCACGAACAATGAGACAT
CCAATGGCTCGACAACTGAAATAATTGACGAAACCGATGCCCGTGCTCAA
TTGGAATCGGGCCGGACCACACCCACTCTTCTGTTGCGCCTCGAACATCC
GCGTAATGAACGCCGGGTGGCCTTTCACGCTGGGATCATCGACAACGAGC
ATTTGAATCGCAAGAAGTCCAAATGCTGCTGCATTTACAAAAAACCTCTC
GCGTTCGGCGAGAGCTCCTCTGAGGATGACGAAGACTGTGAGCACTGCTT
TGGACATCCGGAAAAGCGTCAGAGAAACGCAAAACACAATCACAATCACG
GGGACAAACCATGCACGGAGGCGTCGCATCCGGAAGGACCTTCGACATCA
ACGCAGGCCGCGCACATCAGTCAACCGCCAGCCGAGCCTGTTGAATCGAA
GACCGATCCAAAACCACCTACCCCAGGTGTTGACTTTGAGCAGACGGGCA
GCTCGTAGAAGCTTTCTAGACC

BS12632.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-PA 492 CG13994-RA 1..492 17..508 2410 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-RB 589 CG13994-RB 35..528 17..510 2440 99.6 Plus
CG13994-RA 631 CG13994-RA 35..528 17..510 2440 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6063283..6063568 225..510 1430 100 Plus
2L 23513712 2L 6063023..6063231 17..225 1015 99 Plus
Blast to na_te.dros performed 2015-02-08 11:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3481..3541 305..245 125 67.2 Minus

BS12632.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:45 Download gff for BS12632.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13994-PA 1..492 17..508 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:30 Download gff for BS12632.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 29..534 10..518 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:30 Download gff for BS12632.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 29..534 10..518 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:30 Download gff for BS12632.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6063017..6063230 10..224 97 -> Plus
2L 6063283..6063574 225..518 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:30 Download gff for BS12632.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6063017..6063230 10..224 97 -> Plus
arm_2L 6063283..6063574 225..518 98   Plus

BS12632.complete Sequence

524 bp assembled on 2006-11-01

GenBank Submission: FJ637240

> BS12632.complete
GAAGTTATCAGTCGACATGGCACATAAGCAGAGCACGAACAATGAGACAT
CCAATGGCTCGACAACTGAAATAATTGACGAAACCGATGCCCGTGCTCAA
TTGGAATCGGGCCGGACCACACCCACTCTTCTGTTGCGCCTCGAACATCC
GCGTAATGAACGCCGGGTGGCCTTTCACGCTGGGATCATCGACAACGAGC
ATTTGAATCGCAAGAAGTCCAAATGCTGCTGCATTTACAAAAAACCTCTC
GCGTTCGGCGAGAGCTCCTCTGAGGATGACGAAGACTGTGAGCACTGCTT
TGGACATCCGGAAAAGCGTCAGAGAAACGCAAAACACAATCACAATCACG
GGGACAAACCATGCACGGAGGCGTCGCATCCGGAAGGACCTTCGACATCA
ACGCAGGCCGCGCACATCAGTCAACCGCCAGCCGAGCCTGTTGAATCGAA
GACCGATCCAAAACCACCTACCCCAGGTGTTGACTTTGAGCAGACGGGCA
GCTCGTAGAAGCTTTCTAGACCAT

BS12632.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-RB 492 CG13994-PB 1..492 17..508 2430 99.6 Plus
CG13994-RA 492 CG13994-PA 1..492 17..508 2430 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-RB 589 CG13994-RB 35..528 17..510 2440 99.6 Plus
CG13994-RA 631 CG13994-RA 35..528 17..510 2440 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6063283..6063568 225..510 1430 100 Plus
2L 23513712 2L 6063023..6063231 17..225 1015 99 Plus
Blast to na_te.dros performed 2014-11-26 15:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3481..3541 305..245 125 67.2 Minus

BS12632.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:43 Download gff for BS12632.complete
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 1..492 17..508 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:08 Download gff for BS12632.complete
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 1..505 14..518 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:45 Download gff for BS12632.complete
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 35..526 17..508 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:43 Download gff for BS12632.complete
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 1..505 14..518 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:19 Download gff for BS12632.complete
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 35..526 17..508 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:19 Download gff for BS12632.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6063023..6063230 17..224 99 -> Plus
2L 6063283..6063566 225..508 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:45 Download gff for BS12632.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6063023..6063230 17..224 99 -> Plus
arm_2L 6063283..6063566 225..508 100   Plus

BS12632.pep Sequence

Translation from 16 to 507

> BS12632.pep
MAHKQSTNNETSNGSTTEIIDETDARAQLESGRTTPTLLLRLEHPRNERR
VAFHAGIIDNEHLNRKKSKCCCIYKKPLAFGESSSEDDEDCEHCFGHPEK
RQRNAKHNHNHGDKPCTEASHPEGPSTSTQAAHISQPPAEPVESKTDPKP
PTPGVDFEQTGSS*

BS12632.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-PB 163 CG13994-PB 1..163 1..163 891 100 Plus
CG13994-PA 163 CG13994-PA 1..163 1..163 891 100 Plus
I-3-PB 215 CG11233-PB 30..167 6..147 278 43.1 Plus