Clone Sequence Records
BS12632.3prime Sequence
522 bp (522 high quality bases) assembled on 2006-10-13
> BS12632.3prime
ATGGTCTAGAAAGCTTCTACGAGCTGCCCGTCTGCTCAAAGTCAACACCT
GGGGTAGGTGGTTTTGGATCGGTCTTCGATTCAACAGGCTCGGCTGGCGG
TTGACTGATGTGCGCGGCCTGCGTTGATGTCGAAGGTCCTTCCGGATGCG
ACGCCTCCGTGCATGGTTTGTCCCCGTGATTGTGATTGTGTTTTGCGTTT
CTCTGACGCTTTTCCGGATGTCCAAAGCAGTGCTCACAGTCTTCGTCATC
CTCAGAGGAGCTCTCGCCGAACGCGAGAGGTTTTTTGTAAATGCAGCAGC
ATTTGGACTTCTTGCGATTCAAATGCTCGTTGTCGATGATCCCAGCGTGA
AAGGCCACCCGGCGTTCATTACGCGGATGTTCGAGGCGCAACAGAAGAGT
GGGTGTGGTCCGGCCCGATTCCAATTGAGCACGGGCATCGGTTTCGTCAA
TTATTTCAGTTGTCGAGCCATTGGATGTCTCATTGTTCGTGCTCTGCTTA
TGTGCCATGTCGACTGATAACT
BS12632.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-PA | 492 | CG13994-RA | 1..492 | 508..17 | 2410 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-RB | 589 | CG13994-RB | 35..528 | 508..15 | 2440 | 99.6 | Minus |
CG13994-RA | 631 | CG13994-RA | 35..528 | 508..15 | 2440 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6063283..6063568 | 300..15 | 1430 | 100 | Minus |
2L | 23513712 | 2L | 6063023..6063231 | 508..300 | 1015 | 99 | Minus |
Blast to na_te.dros performed 2015-02-11 09:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3481..3541 | 220..280 | 125 | 67.2 | Plus |
BS12632.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:45 Download gff for
BS12632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-PA | 1..492 | 17..508 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:02 Download gff for
BS12632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 29..534 | 7..515 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:01 Download gff for
BS12632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 29..534 | 7..515 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:01 Download gff for
BS12632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6063017..6063230 | 301..515 | 97 | -> | Minus |
2L | 6063283..6063574 | 7..300 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:02 Download gff for
BS12632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6063017..6063230 | 301..515 | 97 | -> | Minus |
arm_2L | 6063283..6063574 | 7..300 | 98 | | Minus |
BS12632.5prime Sequence
522 bp (522 high quality bases) assembled on 2006-10-13
> BS12632.5prime
GAAGTTATCAGTCGACATGGCACATAAGCAGAGCACGAACAATGAGACAT
CCAATGGCTCGACAACTGAAATAATTGACGAAACCGATGCCCGTGCTCAA
TTGGAATCGGGCCGGACCACACCCACTCTTCTGTTGCGCCTCGAACATCC
GCGTAATGAACGCCGGGTGGCCTTTCACGCTGGGATCATCGACAACGAGC
ATTTGAATCGCAAGAAGTCCAAATGCTGCTGCATTTACAAAAAACCTCTC
GCGTTCGGCGAGAGCTCCTCTGAGGATGACGAAGACTGTGAGCACTGCTT
TGGACATCCGGAAAAGCGTCAGAGAAACGCAAAACACAATCACAATCACG
GGGACAAACCATGCACGGAGGCGTCGCATCCGGAAGGACCTTCGACATCA
ACGCAGGCCGCGCACATCAGTCAACCGCCAGCCGAGCCTGTTGAATCGAA
GACCGATCCAAAACCACCTACCCCAGGTGTTGACTTTGAGCAGACGGGCA
GCTCGTAGAAGCTTTCTAGACC
BS12632.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-PA | 492 | CG13994-RA | 1..492 | 17..508 | 2410 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-RB | 589 | CG13994-RB | 35..528 | 17..510 | 2440 | 99.6 | Plus |
CG13994-RA | 631 | CG13994-RA | 35..528 | 17..510 | 2440 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6063283..6063568 | 225..510 | 1430 | 100 | Plus |
2L | 23513712 | 2L | 6063023..6063231 | 17..225 | 1015 | 99 | Plus |
Blast to na_te.dros performed 2015-02-08 11:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3481..3541 | 305..245 | 125 | 67.2 | Minus |
BS12632.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:45 Download gff for
BS12632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-PA | 1..492 | 17..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:30 Download gff for
BS12632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 29..534 | 10..518 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:30 Download gff for
BS12632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 29..534 | 10..518 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:30 Download gff for
BS12632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6063017..6063230 | 10..224 | 97 | -> | Plus |
2L | 6063283..6063574 | 225..518 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:30 Download gff for
BS12632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6063017..6063230 | 10..224 | 97 | -> | Plus |
arm_2L | 6063283..6063574 | 225..518 | 98 | | Plus |
BS12632.complete Sequence
524 bp assembled on 2006-11-01
GenBank Submission: FJ637240
> BS12632.complete
GAAGTTATCAGTCGACATGGCACATAAGCAGAGCACGAACAATGAGACAT
CCAATGGCTCGACAACTGAAATAATTGACGAAACCGATGCCCGTGCTCAA
TTGGAATCGGGCCGGACCACACCCACTCTTCTGTTGCGCCTCGAACATCC
GCGTAATGAACGCCGGGTGGCCTTTCACGCTGGGATCATCGACAACGAGC
ATTTGAATCGCAAGAAGTCCAAATGCTGCTGCATTTACAAAAAACCTCTC
GCGTTCGGCGAGAGCTCCTCTGAGGATGACGAAGACTGTGAGCACTGCTT
TGGACATCCGGAAAAGCGTCAGAGAAACGCAAAACACAATCACAATCACG
GGGACAAACCATGCACGGAGGCGTCGCATCCGGAAGGACCTTCGACATCA
ACGCAGGCCGCGCACATCAGTCAACCGCCAGCCGAGCCTGTTGAATCGAA
GACCGATCCAAAACCACCTACCCCAGGTGTTGACTTTGAGCAGACGGGCA
GCTCGTAGAAGCTTTCTAGACCAT
BS12632.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-RB | 492 | CG13994-PB | 1..492 | 17..508 | 2430 | 99.6 | Plus |
CG13994-RA | 492 | CG13994-PA | 1..492 | 17..508 | 2430 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-RB | 589 | CG13994-RB | 35..528 | 17..510 | 2440 | 99.6 | Plus |
CG13994-RA | 631 | CG13994-RA | 35..528 | 17..510 | 2440 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6063283..6063568 | 225..510 | 1430 | 100 | Plus |
2L | 23513712 | 2L | 6063023..6063231 | 17..225 | 1015 | 99 | Plus |
Blast to na_te.dros performed 2014-11-26 15:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3481..3541 | 305..245 | 125 | 67.2 | Minus |
BS12632.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:43 Download gff for
BS12632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 1..492 | 17..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:08 Download gff for
BS12632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 1..505 | 14..518 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:45 Download gff for
BS12632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 35..526 | 17..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:43 Download gff for
BS12632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 1..505 | 14..518 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:19 Download gff for
BS12632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 35..526 | 17..508 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:19 Download gff for
BS12632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6063023..6063230 | 17..224 | 99 | -> | Plus |
2L | 6063283..6063566 | 225..508 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:45 Download gff for
BS12632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6063023..6063230 | 17..224 | 99 | -> | Plus |
arm_2L | 6063283..6063566 | 225..508 | 100 | | Plus |
BS12632.pep Sequence
Translation from 16 to 507
> BS12632.pep
MAHKQSTNNETSNGSTTEIIDETDARAQLESGRTTPTLLLRLEHPRNERR
VAFHAGIIDNEHLNRKKSKCCCIYKKPLAFGESSSEDDEDCEHCFGHPEK
RQRNAKHNHNHGDKPCTEASHPEGPSTSTQAAHISQPPAEPVESKTDPKP
PTPGVDFEQTGSS*
BS12632.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-PB | 163 | CG13994-PB | 1..163 | 1..163 | 891 | 100 | Plus |
CG13994-PA | 163 | CG13994-PA | 1..163 | 1..163 | 891 | 100 | Plus |
I-3-PB | 215 | CG11233-PB | 30..167 | 6..147 | 278 | 43.1 | Plus |