Clone BS12633 Report

Search the DGRC for BS12633

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG13322-RA
Protein status:BS12633.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12633.3prime Sequence

866 bp (787 high quality bases) assembled on 2006-10-13

> BS12633.3prime
ATGGTCTAGAAAGCTTCTATGACACAAGACCCGGATCCTCGGCCTTCACG
TGGCTCTGCAGGGGATCGTCGTTGTTGTTGTCATCGTCGTGGATGCCCGA
GGAAACCAGCGCCCGGCTTTTCTCGTAGTCGACAAAGTCGTCGAAGAGGC
TGGGCCACGCTTCGGTATCATCGTAATTTTGTATATCACATTGTTCCGTA
AAATTGAGGTACATGTTCCATGTATCCTTCGGTATGCGGCGAATATTCGG
GTGCTTTTCGAGGAAGTGTATCCAGTTGGAGAAGAGATCAGGTGTTTGTA
CAGTGAACACAAGTTTCCACAGGTCAATAGCCATCTCCAGAGAGAGGACG
CGCTGATCGGGCTCCAGACCAAATCGGAATGTAAAGCGGTACAACTGCTT
GAACATCTCGGCGTCCGCCTTGAGCATCTCGATTGTCTGCTCCAGCCGCA
CCCGGATACTGTCTATTGTGTCCGCCCTCATCTTATGCAGACCCTCAATG
AACTCCACCTTGGTGAAGCGGCACATCTGCGAGGCATCCAGGCACCAGGC
CAAGACGAGAATTGCGAACTCATCGGGCTGATAGTTGAGGTCATTGCACA
GTCGCTCGATGCCGTCCGTGAGTATCATCTCCTCGTCGTCGGGATCTTTG
TACACATCGAATAGTTTGCTCAGCGTTTGGTGCGATACCTCCATCGATTC
CTGGACAGCAGTTGTTATGATATCGCTCATGGTGGGCGCACTGCCATTAA
GCAAACCTAAAGACTTAAAACTATTACGCTTAGTATCACAATTGTTTGCT
TTTGCTGGCTTGAGTGGAGTTCGGCTAGAGAGCAGTTCATCGGGTTCTAA
GGCGCAGCGCTCGTTG

BS12633.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-PA 1005 CG13322-RA 156..1005 866..17 4150 99.5 Minus
CG13322-PC 1005 CG13322-RC 156..1005 866..17 4150 99.5 Minus
CG13322-PB 1005 CG13322-RB 156..1005 866..17 4150 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-RB 2053 CG13322-RB 686..1539 866..13 4195 99.4 Minus
CG13322-RC 2105 CG13322-RC 738..1591 866..13 4195 99.4 Minus
CG13322-RA 2041 CG13322-RA 674..1527 866..13 4195 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12934748..12935114 13..379 1790 99.2 Plus
2R 25286936 2R 12935166..12935500 375..709 1645 99.4 Plus
2R 25286936 2R 12935563..12935703 709..849 690 99.3 Plus
Blast to na_te.dros performed on 2015-02-12 17:47:12 has no hits.

BS12633.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:45 Download gff for BS12633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13322-PB 156..1005 17..866 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:13 Download gff for BS12633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 674..1533 8..866 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:46 Download gff for BS12633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 674..1533 8..866 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:46 Download gff for BS12633.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12935166..12935499 375..708 99 <- Plus
2R 12935563..12935700 709..846 99 <- Plus
2R 12935779..12935798 847..866 100   Plus
2R 12934742..12935109 8..374 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:13 Download gff for BS12633.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8822247..8822614 8..374 98 <- Plus
arm_2R 8822671..8823004 375..708 99 <- Plus
arm_2R 8823068..8823205 709..846 99 <- Plus
arm_2R 8823284..8823303 847..866 100   Plus

BS12633.5prime Sequence

869 bp (807 high quality bases) assembled on 2006-10-13

> BS12633.5prime
GAAGTTATCAGTCGACATGGGCAATTGCCTGAAATGCTTCCAGTCTGCCG
CCGAACAATCGATGCCAACGAACGCCTCGTCCCCCAATTCACACAATTCC
AATTCCAACGCCTGCCAGACGGCCACCAGCCTTGCAAATTGCTACGAATC
GGTGGGCATTAATCCCAATGCCAACGAGCGCTGCGCCTTAGAAACCGATG
AACTGCTCTCTAGCCGAACTCCACTCAAGCCAGCAAAAGCAAACAATTGT
GATACTAAGCGTAATAGTTTTAAGTCTTTAGGTTTGCTTAATGGCAGTGC
GCCCACCATGAGCGATATCATAACAACTGCTGTCCAGGAATCGATGGAGG
TATCGCACCAAACGCTGAGCAAACTATTCGATGTGTACAAAGATCCCGAC
GACGAGGAGATGATACTCACGGACGGCATCGAGCGACTGTGCAATGACCT
CAACTATCAGCCCGATGAGTTCGCAATTCTCGTCTTGGCCTGGTGCCTGG
ATGCCTCGCAGATGTGCCGCTTCACCAAGGTGGAGTTCATTGAGGGTCTG
CATAAGATGAGGGCGGACACAATAGACAGTATCCGGGTGCGGCTGGAGCA
GACAATCGAGATGCTCAAGGCGGACGCCGAGATGTTCAAGCAGTTGTACC
GCTTTACATTCCGATTTGGTCTGGAGCCCGATCAGCGCGTCCTCTCTCTG
GAGATGGCTATTGACCTGTGGAAACTTGTGTTCACTGTACAAACACCTGA
TCTCTTCTCCAACTGGATACACTTCCTCGAAAAGCACCCGAATATTCGCC
GCATACCGAAGGATACATGGAACATGTACCTCAATTTTACGGAACAATGT
GATATACAAAATTACGATG

BS12633.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-PA 1005 CG13322-RA 1..853 17..869 4215 99.7 Plus
CG13322-PC 1005 CG13322-RC 1..853 17..869 4215 99.7 Plus
CG13322-PB 1005 CG13322-RB 1..853 17..869 4215 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-RB 2053 CG13322-RB 531..1383 17..869 4235 99.8 Plus
CG13322-RC 2105 CG13322-RC 583..1435 17..869 4235 99.8 Plus
CG13322-RA 2041 CG13322-RA 519..1371 17..869 4235 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12935166..12935500 663..329 1645 99.4 Minus
2R 25286936 2R 12934904..12935114 869..659 1040 99.5 Minus
2R 25286936 2R 12935779..12935953 191..17 875 100 Minus
2R 25286936 2R 12935563..12935703 329..189 705 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:41:41 has no hits.

BS12633.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:46 Download gff for BS12633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13322-PB 1..853 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:36 Download gff for BS12633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 519..1371 17..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:43 Download gff for BS12633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 519..1371 17..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:43 Download gff for BS12633.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12934904..12935109 664..869 100 <- Minus
2R 12935166..12935499 330..663 99 <- Minus
2R 12935563..12935700 192..329 100 <- Minus
2R 12935779..12935953 17..191 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:36 Download gff for BS12633.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8822409..8822614 664..869 100 <- Minus
arm_2R 8823284..8823458 17..191 100   Minus
arm_2R 8822671..8823004 330..663 99 <- Minus
arm_2R 8823068..8823205 192..329 100 <- Minus

BS12633.complete Sequence

1037 bp assembled on 2006-11-01

GenBank Submission: FJ637241

> BS12633.complete
GAAGTTATCAGTCGACATGGGCAATTGCCTGAAATGCTTCCAGTCTGCCG
CCGAACAATCGATGCCAACGAACGCCTCGTCCCCCAATTCACACAATTCC
AATTCCAACGCCTGCCAGACGGCCACCAGCCTTGCAAATTGCTACGAATC
GGTGGGCATTAATCCCAATGCCAACGAGCGCTGCGCCTTAGAAACCGATG
AACTGCTCTCTAGCCGAACTCCACTCAAGCCAGCAAAAGCAAACAATTGT
GATACTAAGCGTAATAGTTTTAAGTCTTTAGGTTTGCTTAATGGCAGTGC
GCCCACCATGAGCGATATCATAACAACTGCTGTCCAGGAATCGATGGAGG
TATCGCACCAAACGCTGAGCAAACTATTCGATGTGTACAAAGATCCCGAC
GACGAGGAGATGATACTCACGGACGGCATCGAGCGACTGTGCAATGACCT
CAACTATCAGCCCGATGAGTTCGCAATTCTCGTCTTGGCCTGGTGCCTGG
ATGCCTCGCAGATGTGCCGCTTCACCAAGGTGGAGTTCATTGAGGGTCTG
CATAAGATGAGGGCGGACACAATAGACAGTATCCGGGTGCGGCTGGAGCA
GACAATCGAGATGCTCAAGGCGGACGCCGAGATGTTCAAGCAGTTGTACC
GCTTTACATTCCGATTTGGTCTGGAGCCCGATCAGCGCGTCCTCTCTCTG
GAGATGGCTATTGACCTGTGGAAACTTGTGTTCACTGTACAAACACCTGA
TCTCTTCTCCAACTGGATACACTTCCTCGAAAAGCACCCGAATATTCGCC
GCATACCGAAGGATACATGGAACATGTACCTCAATTTTACGGAACAATGT
GATATACAAAATTACGATGATACCGAAGCGTGGCCCAGCCTCTTCGACGA
CTTTGTCGACTACGAGAAAAGCCGGGCGCTGGTTTCCTCGGGCATCCACG
ACGATGACAACAACAACGACGATCCCCTGCAGAGCCACGTGAAGGCCGAG
GATCCGGGTCTTGTGTCATAGAAGCTTTCTAGACCAT

BS12633.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-RB 1005 CG13322-PB 1..1005 17..1021 4980 99.7 Plus
CG13322-RC 1005 CG13322-PC 1..1005 17..1021 4980 99.7 Plus
CG13322-RA 1005 CG13322-PA 1..1005 17..1021 4980 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-RB 2053 CG13322-RB 531..1539 17..1025 4985 99.6 Plus
CG13322-RC 2105 CG13322-RC 583..1591 17..1025 4985 99.6 Plus
CG13322-RA 2041 CG13322-RA 519..1527 17..1025 4985 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12934748..12935114 1025..659 1790 99.2 Minus
2R 25286936 2R 12935166..12935500 663..329 1645 99.4 Minus
2R 25286936 2R 12935779..12935953 191..17 875 100 Minus
2R 25286936 2R 12935563..12935703 329..189 705 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:57:12 has no hits.

BS12633.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:14 Download gff for BS12633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 1..1005 17..1021 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:09 Download gff for BS12633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 525..1539 17..1030 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:13 Download gff for BS12633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 519..1523 17..1021 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:15 Download gff for BS12633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 525..1539 17..1030 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:00 Download gff for BS12633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 519..1523 17..1021 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:00 Download gff for BS12633.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12934752..12935109 664..1021 99 <- Minus
2R 12935166..12935499 330..663 99 <- Minus
2R 12935563..12935700 192..329 100 <- Minus
2R 12935779..12935953 17..191 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:13 Download gff for BS12633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8822257..8822614 664..1021 99 <- Minus
arm_2R 8822671..8823004 330..663 99 <- Minus
arm_2R 8823068..8823205 192..329 100 <- Minus
arm_2R 8823284..8823458 17..191 100   Minus

BS12633.pep Sequence

Translation from 16 to 1020

> BS12633.pep
MGNCLKCFQSAAEQSMPTNASSPNSHNSNSNACQTATSLANCYESVGINP
NANERCALETDELLSSRTPLKPAKANNCDTKRNSFKSLGLLNGSAPTMSD
IITTAVQESMEVSHQTLSKLFDVYKDPDDEEMILTDGIERLCNDLNYQPD
EFAILVLAWCLDASQMCRFTKVEFIEGLHKMRADTIDSIRVRLEQTIEML
KADAEMFKQLYRFTFRFGLEPDQRVLSLEMAIDLWKLVFTVQTPDLFSNW
IHFLEKHPNIRRIPKDTWNMYLNFTEQCDIQNYDDTEAWPSLFDDFVDYE
KSRALVSSGIHDDDNNNDDPLQSHVKAEDPGLVS*

BS12633.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-PB 334 CG13322-PB 1..334 1..334 1771 100 Plus
CG13322-PC 334 CG13322-PC 1..334 1..334 1771 100 Plus
CG13322-PA 334 CG13322-PA 1..334 1..334 1771 100 Plus
CG7427-PE 288 CG7427-PE 55..242 111..299 324 37.5 Plus
CG7427-PA 288 CG7427-PA 55..242 111..299 324 37.5 Plus