Clone Sequence Records
BS12633.3prime Sequence
866 bp (787 high quality bases) assembled on 2006-10-13
> BS12633.3prime
ATGGTCTAGAAAGCTTCTATGACACAAGACCCGGATCCTCGGCCTTCACG
TGGCTCTGCAGGGGATCGTCGTTGTTGTTGTCATCGTCGTGGATGCCCGA
GGAAACCAGCGCCCGGCTTTTCTCGTAGTCGACAAAGTCGTCGAAGAGGC
TGGGCCACGCTTCGGTATCATCGTAATTTTGTATATCACATTGTTCCGTA
AAATTGAGGTACATGTTCCATGTATCCTTCGGTATGCGGCGAATATTCGG
GTGCTTTTCGAGGAAGTGTATCCAGTTGGAGAAGAGATCAGGTGTTTGTA
CAGTGAACACAAGTTTCCACAGGTCAATAGCCATCTCCAGAGAGAGGACG
CGCTGATCGGGCTCCAGACCAAATCGGAATGTAAAGCGGTACAACTGCTT
GAACATCTCGGCGTCCGCCTTGAGCATCTCGATTGTCTGCTCCAGCCGCA
CCCGGATACTGTCTATTGTGTCCGCCCTCATCTTATGCAGACCCTCAATG
AACTCCACCTTGGTGAAGCGGCACATCTGCGAGGCATCCAGGCACCAGGC
CAAGACGAGAATTGCGAACTCATCGGGCTGATAGTTGAGGTCATTGCACA
GTCGCTCGATGCCGTCCGTGAGTATCATCTCCTCGTCGTCGGGATCTTTG
TACACATCGAATAGTTTGCTCAGCGTTTGGTGCGATACCTCCATCGATTC
CTGGACAGCAGTTGTTATGATATCGCTCATGGTGGGCGCACTGCCATTAA
GCAAACCTAAAGACTTAAAACTATTACGCTTAGTATCACAATTGTTTGCT
TTTGCTGGCTTGAGTGGAGTTCGGCTAGAGAGCAGTTCATCGGGTTCTAA
GGCGCAGCGCTCGTTG
BS12633.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-PA | 1005 | CG13322-RA | 156..1005 | 866..17 | 4150 | 99.5 | Minus |
CG13322-PC | 1005 | CG13322-RC | 156..1005 | 866..17 | 4150 | 99.5 | Minus |
CG13322-PB | 1005 | CG13322-RB | 156..1005 | 866..17 | 4150 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-RB | 2053 | CG13322-RB | 686..1539 | 866..13 | 4195 | 99.4 | Minus |
CG13322-RC | 2105 | CG13322-RC | 738..1591 | 866..13 | 4195 | 99.4 | Minus |
CG13322-RA | 2041 | CG13322-RA | 674..1527 | 866..13 | 4195 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12934748..12935114 | 13..379 | 1790 | 99.2 | Plus |
2R | 25286936 | 2R | 12935166..12935500 | 375..709 | 1645 | 99.4 | Plus |
2R | 25286936 | 2R | 12935563..12935703 | 709..849 | 690 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:47:12 has no hits.
BS12633.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:45 Download gff for
BS12633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-PB | 156..1005 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:13 Download gff for
BS12633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RA | 674..1533 | 8..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:46 Download gff for
BS12633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RA | 674..1533 | 8..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:46 Download gff for
BS12633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12935166..12935499 | 375..708 | 99 | <- | Plus |
2R | 12935563..12935700 | 709..846 | 99 | <- | Plus |
2R | 12935779..12935798 | 847..866 | 100 | | Plus |
2R | 12934742..12935109 | 8..374 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:13 Download gff for
BS12633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8822247..8822614 | 8..374 | 98 | <- | Plus |
arm_2R | 8822671..8823004 | 375..708 | 99 | <- | Plus |
arm_2R | 8823068..8823205 | 709..846 | 99 | <- | Plus |
arm_2R | 8823284..8823303 | 847..866 | 100 | | Plus |
BS12633.5prime Sequence
869 bp (807 high quality bases) assembled on 2006-10-13
> BS12633.5prime
GAAGTTATCAGTCGACATGGGCAATTGCCTGAAATGCTTCCAGTCTGCCG
CCGAACAATCGATGCCAACGAACGCCTCGTCCCCCAATTCACACAATTCC
AATTCCAACGCCTGCCAGACGGCCACCAGCCTTGCAAATTGCTACGAATC
GGTGGGCATTAATCCCAATGCCAACGAGCGCTGCGCCTTAGAAACCGATG
AACTGCTCTCTAGCCGAACTCCACTCAAGCCAGCAAAAGCAAACAATTGT
GATACTAAGCGTAATAGTTTTAAGTCTTTAGGTTTGCTTAATGGCAGTGC
GCCCACCATGAGCGATATCATAACAACTGCTGTCCAGGAATCGATGGAGG
TATCGCACCAAACGCTGAGCAAACTATTCGATGTGTACAAAGATCCCGAC
GACGAGGAGATGATACTCACGGACGGCATCGAGCGACTGTGCAATGACCT
CAACTATCAGCCCGATGAGTTCGCAATTCTCGTCTTGGCCTGGTGCCTGG
ATGCCTCGCAGATGTGCCGCTTCACCAAGGTGGAGTTCATTGAGGGTCTG
CATAAGATGAGGGCGGACACAATAGACAGTATCCGGGTGCGGCTGGAGCA
GACAATCGAGATGCTCAAGGCGGACGCCGAGATGTTCAAGCAGTTGTACC
GCTTTACATTCCGATTTGGTCTGGAGCCCGATCAGCGCGTCCTCTCTCTG
GAGATGGCTATTGACCTGTGGAAACTTGTGTTCACTGTACAAACACCTGA
TCTCTTCTCCAACTGGATACACTTCCTCGAAAAGCACCCGAATATTCGCC
GCATACCGAAGGATACATGGAACATGTACCTCAATTTTACGGAACAATGT
GATATACAAAATTACGATG
BS12633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-PA | 1005 | CG13322-RA | 1..853 | 17..869 | 4215 | 99.7 | Plus |
CG13322-PC | 1005 | CG13322-RC | 1..853 | 17..869 | 4215 | 99.7 | Plus |
CG13322-PB | 1005 | CG13322-RB | 1..853 | 17..869 | 4215 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-RB | 2053 | CG13322-RB | 531..1383 | 17..869 | 4235 | 99.8 | Plus |
CG13322-RC | 2105 | CG13322-RC | 583..1435 | 17..869 | 4235 | 99.8 | Plus |
CG13322-RA | 2041 | CG13322-RA | 519..1371 | 17..869 | 4235 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12935166..12935500 | 663..329 | 1645 | 99.4 | Minus |
2R | 25286936 | 2R | 12934904..12935114 | 869..659 | 1040 | 99.5 | Minus |
2R | 25286936 | 2R | 12935779..12935953 | 191..17 | 875 | 100 | Minus |
2R | 25286936 | 2R | 12935563..12935703 | 329..189 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:41:41 has no hits.
BS12633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:46 Download gff for
BS12633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-PB | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:36 Download gff for
BS12633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RA | 519..1371 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:43 Download gff for
BS12633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RA | 519..1371 | 17..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:43 Download gff for
BS12633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12934904..12935109 | 664..869 | 100 | <- | Minus |
2R | 12935166..12935499 | 330..663 | 99 | <- | Minus |
2R | 12935563..12935700 | 192..329 | 100 | <- | Minus |
2R | 12935779..12935953 | 17..191 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:36 Download gff for
BS12633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8822409..8822614 | 664..869 | 100 | <- | Minus |
arm_2R | 8823284..8823458 | 17..191 | 100 | | Minus |
arm_2R | 8822671..8823004 | 330..663 | 99 | <- | Minus |
arm_2R | 8823068..8823205 | 192..329 | 100 | <- | Minus |
BS12633.complete Sequence
1037 bp assembled on 2006-11-01
GenBank Submission: FJ637241
> BS12633.complete
GAAGTTATCAGTCGACATGGGCAATTGCCTGAAATGCTTCCAGTCTGCCG
CCGAACAATCGATGCCAACGAACGCCTCGTCCCCCAATTCACACAATTCC
AATTCCAACGCCTGCCAGACGGCCACCAGCCTTGCAAATTGCTACGAATC
GGTGGGCATTAATCCCAATGCCAACGAGCGCTGCGCCTTAGAAACCGATG
AACTGCTCTCTAGCCGAACTCCACTCAAGCCAGCAAAAGCAAACAATTGT
GATACTAAGCGTAATAGTTTTAAGTCTTTAGGTTTGCTTAATGGCAGTGC
GCCCACCATGAGCGATATCATAACAACTGCTGTCCAGGAATCGATGGAGG
TATCGCACCAAACGCTGAGCAAACTATTCGATGTGTACAAAGATCCCGAC
GACGAGGAGATGATACTCACGGACGGCATCGAGCGACTGTGCAATGACCT
CAACTATCAGCCCGATGAGTTCGCAATTCTCGTCTTGGCCTGGTGCCTGG
ATGCCTCGCAGATGTGCCGCTTCACCAAGGTGGAGTTCATTGAGGGTCTG
CATAAGATGAGGGCGGACACAATAGACAGTATCCGGGTGCGGCTGGAGCA
GACAATCGAGATGCTCAAGGCGGACGCCGAGATGTTCAAGCAGTTGTACC
GCTTTACATTCCGATTTGGTCTGGAGCCCGATCAGCGCGTCCTCTCTCTG
GAGATGGCTATTGACCTGTGGAAACTTGTGTTCACTGTACAAACACCTGA
TCTCTTCTCCAACTGGATACACTTCCTCGAAAAGCACCCGAATATTCGCC
GCATACCGAAGGATACATGGAACATGTACCTCAATTTTACGGAACAATGT
GATATACAAAATTACGATGATACCGAAGCGTGGCCCAGCCTCTTCGACGA
CTTTGTCGACTACGAGAAAAGCCGGGCGCTGGTTTCCTCGGGCATCCACG
ACGATGACAACAACAACGACGATCCCCTGCAGAGCCACGTGAAGGCCGAG
GATCCGGGTCTTGTGTCATAGAAGCTTTCTAGACCAT
BS12633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-RB | 1005 | CG13322-PB | 1..1005 | 17..1021 | 4980 | 99.7 | Plus |
CG13322-RC | 1005 | CG13322-PC | 1..1005 | 17..1021 | 4980 | 99.7 | Plus |
CG13322-RA | 1005 | CG13322-PA | 1..1005 | 17..1021 | 4980 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-RB | 2053 | CG13322-RB | 531..1539 | 17..1025 | 4985 | 99.6 | Plus |
CG13322-RC | 2105 | CG13322-RC | 583..1591 | 17..1025 | 4985 | 99.6 | Plus |
CG13322-RA | 2041 | CG13322-RA | 519..1527 | 17..1025 | 4985 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12934748..12935114 | 1025..659 | 1790 | 99.2 | Minus |
2R | 25286936 | 2R | 12935166..12935500 | 663..329 | 1645 | 99.4 | Minus |
2R | 25286936 | 2R | 12935779..12935953 | 191..17 | 875 | 100 | Minus |
2R | 25286936 | 2R | 12935563..12935703 | 329..189 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:57:12 has no hits.
BS12633.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:14 Download gff for
BS12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RB | 1..1005 | 17..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:09 Download gff for
BS12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RB | 525..1539 | 17..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:13 Download gff for
BS12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RA | 519..1523 | 17..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:15 Download gff for
BS12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RB | 525..1539 | 17..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:00 Download gff for
BS12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RA | 519..1523 | 17..1021 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:00 Download gff for
BS12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12934752..12935109 | 664..1021 | 99 | <- | Minus |
2R | 12935166..12935499 | 330..663 | 99 | <- | Minus |
2R | 12935563..12935700 | 192..329 | 100 | <- | Minus |
2R | 12935779..12935953 | 17..191 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:13 Download gff for
BS12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8822257..8822614 | 664..1021 | 99 | <- | Minus |
arm_2R | 8822671..8823004 | 330..663 | 99 | <- | Minus |
arm_2R | 8823068..8823205 | 192..329 | 100 | <- | Minus |
arm_2R | 8823284..8823458 | 17..191 | 100 | | Minus |
BS12633.pep Sequence
Translation from 16 to 1020
> BS12633.pep
MGNCLKCFQSAAEQSMPTNASSPNSHNSNSNACQTATSLANCYESVGINP
NANERCALETDELLSSRTPLKPAKANNCDTKRNSFKSLGLLNGSAPTMSD
IITTAVQESMEVSHQTLSKLFDVYKDPDDEEMILTDGIERLCNDLNYQPD
EFAILVLAWCLDASQMCRFTKVEFIEGLHKMRADTIDSIRVRLEQTIEML
KADAEMFKQLYRFTFRFGLEPDQRVLSLEMAIDLWKLVFTVQTPDLFSNW
IHFLEKHPNIRRIPKDTWNMYLNFTEQCDIQNYDDTEAWPSLFDDFVDYE
KSRALVSSGIHDDDNNNDDPLQSHVKAEDPGLVS*
BS12633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-PB | 334 | CG13322-PB | 1..334 | 1..334 | 1771 | 100 | Plus |
CG13322-PC | 334 | CG13322-PC | 1..334 | 1..334 | 1771 | 100 | Plus |
CG13322-PA | 334 | CG13322-PA | 1..334 | 1..334 | 1771 | 100 | Plus |
CG7427-PE | 288 | CG7427-PE | 55..242 | 111..299 | 324 | 37.5 | Plus |
CG7427-PA | 288 | CG7427-PA | 55..242 | 111..299 | 324 | 37.5 | Plus |