Clone BS12634 Report

Search the DGRC for BS12634

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG32588-RA
Protein status:BS12634.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12634.5prime Sequence

543 bp (543 high quality bases) assembled on 2006-10-13

> BS12634.5prime
GAAGTTATCAGTCGACATGACATTCTTCGAGCAGATCAGTGATCACTTTT
GCCGCGTTGTGCACACCAATCTCAAGATACCTCTATCATGTTGCGAAAGG
CGCATCAACTGGAAAATCTCGAAAAGTATCGATTTATTGGTATTCTTTTA
TACCCTCAACATCGGTGTCCTTCGATTGTTAATAAATTTTATAGATTTCA
TGATCGTTTTCTTCGGATGGCCAAGCAATCTTTTGATTTTAAAGGACTTC
AATTCGCGGCGCTTTCGAGCGCTCACACACTTTTTACTGGTGAGAGCGTA
CATGCTAATGATATACTCCATTGTATTTATCACTCCGCATAAGAATAATA
TCTTCGTTCCGCTTTTTGCCATCATCATGACCATCGATGTGTATGTCATT
AAATTAGATATGAAGCGACGTGGATTGATGCCTCTGGAGCGCAGTGTGCC
CCCCCTATGGGAAATATTGATCAGCTTGTGCTGTGTTGTTGCCGGGCAAT
GGCTGCTCAAGTATTTGATCTTTCATTAGAAGCTTTCTAGACC

BS12634.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-PA 513 CG32588-RA 1..513 17..529 2540 99.8 Plus
CG33252-PA 525 CG33252-RA 7..53 23..69 160 93.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-RA 677 CG32588-RA 77..594 12..529 2560 99.6 Plus
CG43075-RA 757 CG43075-RA 78..473 16..396 565 76.8 Plus
CG33252-RA 819 CG33252-RA 100..432 23..340 445 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15205890..15206090 529..329 1005 100 Minus
X 23542271 X 15206394..15206560 178..12 820 99.4 Minus
X 23542271 X 15206169..15206319 328..178 740 99.3 Minus
X 23542271 X 15220940..15221099 175..16 425 84.4 Minus
X 23542271 X 16896936..16897088 175..23 300 79.7 Minus
Blast to na_te.dros performed on 2015-02-06 10:24:30 has no hits.

BS12634.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:47 Download gff for BS12634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32588-PA 1..513 17..529 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:22 Download gff for BS12634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 71..594 6..529 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:12 Download gff for BS12634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 71..594 6..529 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:12 Download gff for BS12634.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15206169..15206318 179..328 99 <- Minus
X 15205890..15206090 329..529 100 <- Minus
X 15206394..15206566 6..178 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:22 Download gff for BS12634.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15099923..15100123 329..529 100 <- Minus
arm_X 15100202..15100351 179..328 99 <- Minus
arm_X 15100427..15100599 6..178 97   Minus

BS12634.3prime Sequence

543 bp (543 high quality bases) assembled on 2006-10-13

> BS12634.3prime
ATGGTCTAGAAAGCTTCTAATGAAAGATCAAATACTTGAGCAGCCATTGC
CCGGCAACAACACAGCACAAGCTGATCAATATTTCCCATAGGGGGGGCAC
ACTGCGCTCCAGAGGCATCAATCCACGTCGCTTCATATCTAATTTAATGA
CATACACATCGATGGTCATGATGATGGCAAAAAGCGGAACGAAGATATTA
TTCTTATGCGGAGTGATAAATACAATGGAGTATATCATTAGCATGTACGC
TCTCACCAGTAAAAAGTGTGTGAGCGCTCGAAAGCGCCGCGAATTGAAGT
CCTTTAAAATCAAAAGATTGCTTGGCCATCCGAAGAAAACGATCATGAAA
TCTATAAAATTTATTAACAATCGAAGGACACCGATGTTGAGGGTATAAAA
GAATACCAATAAATCGATACTTTTCGAGATTTTCCAGTTGATGCGCCTTT
CGCAACATGATAGAGGTATCTTGAGATTGGTGTGCACAACGCGGCAAAAG
TGATCACTGATCTGCTCGAAGAATGTCATGTCGACTGATAACT

BS12634.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-PA 513 CG32588-RA 1..513 529..17 2540 99.8 Minus
CG33252-PA 525 CG33252-RA 7..53 523..477 160 93.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-RA 677 CG32588-RA 77..594 534..17 2560 99.6 Minus
CG43075-RA 757 CG43075-RA 78..473 530..150 565 76.8 Minus
CG33252-RA 819 CG33252-RA 100..432 523..206 445 76 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15205890..15206090 17..217 1005 100 Plus
X 23542271 X 15206394..15206560 368..534 820 99.4 Plus
X 23542271 X 15206169..15206319 218..368 740 99.3 Plus
X 23542271 X 15220940..15221099 371..530 425 84.4 Plus
X 23542271 X 16896936..16897088 371..523 300 79.7 Plus
Blast to na_te.dros performed on 2015-02-12 11:09:28 has no hits.

BS12634.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:47 Download gff for BS12634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32588-PA 1..513 17..529 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:02 Download gff for BS12634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 71..594 17..540 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:24 Download gff for BS12634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 71..594 17..540 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:24 Download gff for BS12634.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15205890..15206090 17..217 100 <- Plus
X 15206169..15206318 218..367 99 <- Plus
X 15206394..15206566 368..540 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:02 Download gff for BS12634.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15099923..15100123 17..217 100 <- Plus
arm_X 15100202..15100351 218..367 99 <- Plus
arm_X 15100427..15100599 368..540 97   Plus

BS12634.complete Sequence

545 bp assembled on 2006-11-01

GenBank Submission: FJ637242

> BS12634.complete
GAAGTTATCAGTCGACATGACATTCTTCGAGCAGATCAGTGATCACTTTT
GCCGCGTTGTGCACACCAATCTCAAGATACCTCTATCATGTTGCGAAAGG
CGCATCAACTGGAAAATCTCGAAAAGTATCGATTTATTGGTATTCTTTTA
TACCCTCAACATCGGTGTCCTTCGATTGTTAATAAATTTTATAGATTTCA
TGATCGTTTTCTTCGGATGGCCAAGCAATCTTTTGATTTTAAAGGACTTC
AATTCGCGGCGCTTTCGAGCGCTCACACACTTTTTACTGGTGAGAGCGTA
CATGCTAATGATATACTCCATTGTATTTATCACTCCGCATAAGAATAATA
TCTTCGTTCCGCTTTTTGCCATCATCATGACCATCGATGTGTATGTCATT
AAATTAGATATGAAGCGACGTGGATTGATGCCTCTGGAGCGCAGTGTGCC
CCCCCTATGGGAAATATTGATCAGCTTGTGCTGTGTTGTTGCCGGGCAAT
GGCTGCTCAAGTATTTGATCTTTCATTAGAAGCTTTCTAGACCAT

BS12634.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-RA 513 CG32588-PA 1..513 17..529 2550 99.8 Plus
CG43075-RA 525 CG43075-PA 1..395 17..396 500 75.7 Plus
CG33252-RA 525 CG33252-PA 7..339 23..340 415 75.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-RA 677 CG32588-RA 77..594 12..529 2560 99.6 Plus
CG43075-RA 757 CG43075-RA 78..473 16..396 505 75.8 Plus
CG33252-RA 819 CG33252-RA 100..432 23..340 415 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15205890..15206090 529..329 1005 100 Minus
X 23542271 X 15206394..15206560 178..12 820 99.4 Minus
X 23542271 X 15206169..15206319 328..178 740 99.3 Minus
X 23542271 X 15220940..15221099 175..16 425 84.4 Minus
X 23542271 X 16896936..16897088 175..23 300 79.7 Minus
Blast to na_te.dros performed on 2014-11-27 13:07:58 has no hits.

BS12634.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:46 Download gff for BS12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 1..513 17..529 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:10 Download gff for BS12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 71..594 6..529 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:58:26 Download gff for BS12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 82..594 17..529 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:46 Download gff for BS12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 71..594 6..529 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:35 Download gff for BS12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 82..594 17..529 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:35 Download gff for BS12634.complete
Subject Subject Range Query Range Percent Splice Strand
X 15205890..15206090 329..529 100 <- Minus
X 15206169..15206318 179..328 99 <- Minus
X 15206394..15206555 17..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:58:26 Download gff for BS12634.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15099923..15100123 329..529 100 <- Minus
arm_X 15100202..15100351 179..328 99 <- Minus
arm_X 15100427..15100588 17..178 100   Minus

BS12634.pep Sequence

Translation from 16 to 528

> BS12634.pep
MTFFEQISDHFCRVVHTNLKIPLSCCERRINWKISKSIDLLVFFYTLNIG
VLRLLINFIDFMIVFFGWPSNLLILKDFNSRRFRALTHFLLVRAYMLMIY
SIVFITPHKNNIFVPLFAIIMTIDVYVIKLDMKRRGLMPLERSVPPLWEI
LISLCCVVAGQWLLKYLIFH*

BS12634.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-PA 170 CG32588-PA 1..170 1..170 895 100 Plus
CG43075-PA 174 CG43075-PA 1..172 1..168 496 56.1 Plus
CG33252-PA 174 CG33252-PA 1..173 1..169 420 52.3 Plus