Clone Sequence Records
BS12634.5prime Sequence
543 bp (543 high quality bases) assembled on 2006-10-13
> BS12634.5prime
GAAGTTATCAGTCGACATGACATTCTTCGAGCAGATCAGTGATCACTTTT
GCCGCGTTGTGCACACCAATCTCAAGATACCTCTATCATGTTGCGAAAGG
CGCATCAACTGGAAAATCTCGAAAAGTATCGATTTATTGGTATTCTTTTA
TACCCTCAACATCGGTGTCCTTCGATTGTTAATAAATTTTATAGATTTCA
TGATCGTTTTCTTCGGATGGCCAAGCAATCTTTTGATTTTAAAGGACTTC
AATTCGCGGCGCTTTCGAGCGCTCACACACTTTTTACTGGTGAGAGCGTA
CATGCTAATGATATACTCCATTGTATTTATCACTCCGCATAAGAATAATA
TCTTCGTTCCGCTTTTTGCCATCATCATGACCATCGATGTGTATGTCATT
AAATTAGATATGAAGCGACGTGGATTGATGCCTCTGGAGCGCAGTGTGCC
CCCCCTATGGGAAATATTGATCAGCTTGTGCTGTGTTGTTGCCGGGCAAT
GGCTGCTCAAGTATTTGATCTTTCATTAGAAGCTTTCTAGACC
BS12634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-PA | 513 | CG32588-RA | 1..513 | 17..529 | 2540 | 99.8 | Plus |
CG33252-PA | 525 | CG33252-RA | 7..53 | 23..69 | 160 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-RA | 677 | CG32588-RA | 77..594 | 12..529 | 2560 | 99.6 | Plus |
CG43075-RA | 757 | CG43075-RA | 78..473 | 16..396 | 565 | 76.8 | Plus |
CG33252-RA | 819 | CG33252-RA | 100..432 | 23..340 | 445 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15205890..15206090 | 529..329 | 1005 | 100 | Minus |
X | 23542271 | X | 15206394..15206560 | 178..12 | 820 | 99.4 | Minus |
X | 23542271 | X | 15206169..15206319 | 328..178 | 740 | 99.3 | Minus |
X | 23542271 | X | 15220940..15221099 | 175..16 | 425 | 84.4 | Minus |
X | 23542271 | X | 16896936..16897088 | 175..23 | 300 | 79.7 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:24:30 has no hits.
BS12634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:47 Download gff for
BS12634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-PA | 1..513 | 17..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:22 Download gff for
BS12634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 71..594 | 6..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:12 Download gff for
BS12634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 71..594 | 6..529 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:12 Download gff for
BS12634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15206169..15206318 | 179..328 | 99 | <- | Minus |
X | 15205890..15206090 | 329..529 | 100 | <- | Minus |
X | 15206394..15206566 | 6..178 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:22 Download gff for
BS12634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15099923..15100123 | 329..529 | 100 | <- | Minus |
arm_X | 15100202..15100351 | 179..328 | 99 | <- | Minus |
arm_X | 15100427..15100599 | 6..178 | 97 | | Minus |
BS12634.3prime Sequence
543 bp (543 high quality bases) assembled on 2006-10-13
> BS12634.3prime
ATGGTCTAGAAAGCTTCTAATGAAAGATCAAATACTTGAGCAGCCATTGC
CCGGCAACAACACAGCACAAGCTGATCAATATTTCCCATAGGGGGGGCAC
ACTGCGCTCCAGAGGCATCAATCCACGTCGCTTCATATCTAATTTAATGA
CATACACATCGATGGTCATGATGATGGCAAAAAGCGGAACGAAGATATTA
TTCTTATGCGGAGTGATAAATACAATGGAGTATATCATTAGCATGTACGC
TCTCACCAGTAAAAAGTGTGTGAGCGCTCGAAAGCGCCGCGAATTGAAGT
CCTTTAAAATCAAAAGATTGCTTGGCCATCCGAAGAAAACGATCATGAAA
TCTATAAAATTTATTAACAATCGAAGGACACCGATGTTGAGGGTATAAAA
GAATACCAATAAATCGATACTTTTCGAGATTTTCCAGTTGATGCGCCTTT
CGCAACATGATAGAGGTATCTTGAGATTGGTGTGCACAACGCGGCAAAAG
TGATCACTGATCTGCTCGAAGAATGTCATGTCGACTGATAACT
BS12634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-PA | 513 | CG32588-RA | 1..513 | 529..17 | 2540 | 99.8 | Minus |
CG33252-PA | 525 | CG33252-RA | 7..53 | 523..477 | 160 | 93.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-RA | 677 | CG32588-RA | 77..594 | 534..17 | 2560 | 99.6 | Minus |
CG43075-RA | 757 | CG43075-RA | 78..473 | 530..150 | 565 | 76.8 | Minus |
CG33252-RA | 819 | CG33252-RA | 100..432 | 523..206 | 445 | 76 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15205890..15206090 | 17..217 | 1005 | 100 | Plus |
X | 23542271 | X | 15206394..15206560 | 368..534 | 820 | 99.4 | Plus |
X | 23542271 | X | 15206169..15206319 | 218..368 | 740 | 99.3 | Plus |
X | 23542271 | X | 15220940..15221099 | 371..530 | 425 | 84.4 | Plus |
X | 23542271 | X | 16896936..16897088 | 371..523 | 300 | 79.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:09:28 has no hits.
BS12634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:47 Download gff for
BS12634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-PA | 1..513 | 17..529 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:02 Download gff for
BS12634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 71..594 | 17..540 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:24 Download gff for
BS12634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 71..594 | 17..540 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:24 Download gff for
BS12634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15205890..15206090 | 17..217 | 100 | <- | Plus |
X | 15206169..15206318 | 218..367 | 99 | <- | Plus |
X | 15206394..15206566 | 368..540 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:02 Download gff for
BS12634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15099923..15100123 | 17..217 | 100 | <- | Plus |
arm_X | 15100202..15100351 | 218..367 | 99 | <- | Plus |
arm_X | 15100427..15100599 | 368..540 | 97 | | Plus |
BS12634.complete Sequence
545 bp assembled on 2006-11-01
GenBank Submission: FJ637242
> BS12634.complete
GAAGTTATCAGTCGACATGACATTCTTCGAGCAGATCAGTGATCACTTTT
GCCGCGTTGTGCACACCAATCTCAAGATACCTCTATCATGTTGCGAAAGG
CGCATCAACTGGAAAATCTCGAAAAGTATCGATTTATTGGTATTCTTTTA
TACCCTCAACATCGGTGTCCTTCGATTGTTAATAAATTTTATAGATTTCA
TGATCGTTTTCTTCGGATGGCCAAGCAATCTTTTGATTTTAAAGGACTTC
AATTCGCGGCGCTTTCGAGCGCTCACACACTTTTTACTGGTGAGAGCGTA
CATGCTAATGATATACTCCATTGTATTTATCACTCCGCATAAGAATAATA
TCTTCGTTCCGCTTTTTGCCATCATCATGACCATCGATGTGTATGTCATT
AAATTAGATATGAAGCGACGTGGATTGATGCCTCTGGAGCGCAGTGTGCC
CCCCCTATGGGAAATATTGATCAGCTTGTGCTGTGTTGTTGCCGGGCAAT
GGCTGCTCAAGTATTTGATCTTTCATTAGAAGCTTTCTAGACCAT
BS12634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-RA | 513 | CG32588-PA | 1..513 | 17..529 | 2550 | 99.8 | Plus |
CG43075-RA | 525 | CG43075-PA | 1..395 | 17..396 | 500 | 75.7 | Plus |
CG33252-RA | 525 | CG33252-PA | 7..339 | 23..340 | 415 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-RA | 677 | CG32588-RA | 77..594 | 12..529 | 2560 | 99.6 | Plus |
CG43075-RA | 757 | CG43075-RA | 78..473 | 16..396 | 505 | 75.8 | Plus |
CG33252-RA | 819 | CG33252-RA | 100..432 | 23..340 | 415 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15205890..15206090 | 529..329 | 1005 | 100 | Minus |
X | 23542271 | X | 15206394..15206560 | 178..12 | 820 | 99.4 | Minus |
X | 23542271 | X | 15206169..15206319 | 328..178 | 740 | 99.3 | Minus |
X | 23542271 | X | 15220940..15221099 | 175..16 | 425 | 84.4 | Minus |
X | 23542271 | X | 16896936..16897088 | 175..23 | 300 | 79.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:07:58 has no hits.
BS12634.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:46 Download gff for
BS12634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 1..513 | 17..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:10 Download gff for
BS12634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 71..594 | 6..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:58:26 Download gff for
BS12634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 82..594 | 17..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:46 Download gff for
BS12634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 71..594 | 6..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:35 Download gff for
BS12634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 82..594 | 17..529 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:35 Download gff for
BS12634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15205890..15206090 | 329..529 | 100 | <- | Minus |
X | 15206169..15206318 | 179..328 | 99 | <- | Minus |
X | 15206394..15206555 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:58:26 Download gff for
BS12634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15099923..15100123 | 329..529 | 100 | <- | Minus |
arm_X | 15100202..15100351 | 179..328 | 99 | <- | Minus |
arm_X | 15100427..15100588 | 17..178 | 100 | | Minus |
BS12634.pep Sequence
Translation from 16 to 528
> BS12634.pep
MTFFEQISDHFCRVVHTNLKIPLSCCERRINWKISKSIDLLVFFYTLNIG
VLRLLINFIDFMIVFFGWPSNLLILKDFNSRRFRALTHFLLVRAYMLMIY
SIVFITPHKNNIFVPLFAIIMTIDVYVIKLDMKRRGLMPLERSVPPLWEI
LISLCCVVAGQWLLKYLIFH*
BS12634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-PA | 170 | CG32588-PA | 1..170 | 1..170 | 895 | 100 | Plus |
CG43075-PA | 174 | CG43075-PA | 1..172 | 1..168 | 496 | 56.1 | Plus |
CG33252-PA | 174 | CG33252-PA | 1..173 | 1..169 | 420 | 52.3 | Plus |