Clone BS12635 Report

Search the DGRC for BS12635

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG13029-RB
Protein status:BS12635.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12635.3prime Sequence

393 bp (393 high quality bases) assembled on 2006-10-13

> BS12635.3prime
ATGGTCTAGAAAGCTTCTATGGCAAATACTTTACCGGCACTAACATCTGG
CAGTGGTCACAGAAGTGCCACAGGTGCTTCTCCTCTGGGCACGGAATCTG
GCGATCCTTGGGCAAGGAAGTCACCGCCGAGGAGTTGCGATGGCAGGCTA
GCATATTTCCTAGCAGATTGTAGACAATAAATAGTGCCATAAGCCAGGCG
ATCTTGAAGAACAGTCCATCGGTGTCGTATATCCTGGGCAACATATAGAA
CATTTCCACCGAAAAAAATAATACCGTTCCCACTAGAACGAATCCCACTG
CGCTGGGATGTACGATCTTTGCGAACCGCTTCGGATTGGCGTTGGCAATG
TACTTGCATCCTATCATCATGAAGCACATGTCGACTGATAACT

BS12635.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-PB 363 CG13029-RB 1..363 379..17 1815 100 Minus
CG13029-PC 867 CG13029-RC 1..345 379..35 1725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-RC 1047 CG13029-RC 75..420 380..35 1730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16860696..16861068 380..8 1835 99.5 Minus
Blast to na_te.dros performed on 2015-02-12 11:09:44 has no hits.

BS12635.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:47 Download gff for BS12635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13029-PB 1..363 17..379 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:04 Download gff for BS12635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13029-RC 75..420 35..380 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:49 Download gff for BS12635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13029-RC 75..420 35..380 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:49 Download gff for BS12635.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16860696..16861068 8..380 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:04 Download gff for BS12635.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16853796..16854168 8..380 99   Minus

BS12635.5prime Sequence

393 bp (393 high quality bases) assembled on 2006-10-13

> BS12635.5prime
GAAGTTATCAGTCGACATGTGCTTCATGATGATAGGATGCAAGTACATTG
CCAACGCCAATCCGAAGCGGTTCGCAAAGATCGTACATCCCAGCGCAGTG
GGATTCGTTCTAGTGGGAACGGTATTATTTTTTTCGGTGGAAATGTTCTA
TATGTTGCCCAGGATATACGACACCGATGGACTGTTCTTCAAGATCGCCT
GGCTTATGGCACTATTTATTGTCTACAATCTGCTAGGAAATATGCTAGCC
TGCCATCGCAACTCCTCGGCGGTGACTTCCTTGCCCAAGGATCGCCAGAT
TCCGTGCCCAGAGGAGAAGCACCTGTGGCACTTCTGTGACCACTGCCAGA
TGTTAGTGCCGGTAAAGTATTTGCCATAGAAGCTTTCTAGACC

BS12635.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-PB 363 CG13029-RB 1..363 17..379 1815 100 Plus
CG13029-PC 867 CG13029-RC 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-RC 1047 CG13029-RC 75..420 16..361 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16860696..16861068 16..388 1835 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 16:12:09 has no hits.

BS12635.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:48 Download gff for BS12635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13029-PB 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:38 Download gff for BS12635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13029-RC 75..420 16..361 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:40 Download gff for BS12635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13029-RC 75..420 16..361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:40 Download gff for BS12635.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16860696..16861068 16..388 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:38 Download gff for BS12635.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16853796..16854168 16..388 99   Plus

BS12635.complete Sequence

395 bp assembled on 2006-11-01

GenBank Submission: FJ637243

> BS12635.complete
GAAGTTATCAGTCGACATGTGCTTCATGATGATAGGATGCAAGTACATTG
CCAACGCCAATCCGAAGCGGTTCGCAAAGATCGTACATCCCAGCGCAGTG
GGATTCGTTCTAGTGGGAACGGTATTATTTTTTTCGGTGGAAATGTTCTA
TATGTTGCCCAGGATATACGACACCGATGGACTGTTCTTCAAGATCGCCT
GGCTTATGGCACTATTTATTGTCTACAATCTGCTAGGAAATATGCTAGCC
TGCCATCGCAACTCCTCGGCGGTGACTTCCTTGCCCAAGGATCGCCAGAT
TCCGTGCCCAGAGGAGAAGCACCTGTGGCACTTCTGTGACCACTGCCAGA
TGTTAGTGCCGGTAAAGTATTTGCCATAGAAGCTTTCTAGACCAT

BS12635.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-RC 867 CG13029-PC 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-RC 1047 CG13029-RC 75..420 16..361 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16860696..16861068 16..388 1835 99.5 Plus
Blast to na_te.dros performed on 2014-11-26 22:20:47 has no hits.

BS12635.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:47 Download gff for BS12635.complete
Subject Subject Range Query Range Percent Splice Strand
CG13029-RB 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:11 Download gff for BS12635.complete
Subject Subject Range Query Range Percent Splice Strand
CG13029-RB 75..447 16..388 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:57 Download gff for BS12635.complete
Subject Subject Range Query Range Percent Splice Strand
CG13029-RC 76..420 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:47 Download gff for BS12635.complete
Subject Subject Range Query Range Percent Splice Strand
CG13029-RB 75..447 16..388 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:15 Download gff for BS12635.complete
Subject Subject Range Query Range Percent Splice Strand
CG13029-RC 76..420 17..361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:15 Download gff for BS12635.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16860697..16861059 17..379 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:57 Download gff for BS12635.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16853797..16854159 17..379 100   Plus

BS12635.pep Sequence

Translation from 16 to 378

> BS12635.pep
MCFMMIGCKYIANANPKRFAKIVHPSAVGFVLVGTVLFFSVEMFYMLPRI
YDTDGLFFKIAWLMALFIVYNLLGNMLACHRNSSAVTSLPKDRQIPCPEE
KHLWHFCDHCQMLVPVKYLP*

BS12635.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-PC 288 CG13029-PC 1..115 1..115 631 100 Plus
CG17197-PB 290 CG17197-PB 1..115 1..115 372 53.9 Plus
CG17196-PA 276 CG17196-PA 1..113 1..115 312 49.6 Plus
CG17195-PA 283 CG17195-PA 1..111 1..113 303 45.1 Plus
CG17196-PC 253 CG17196-PC 1..90 1..115 224 40 Plus