Clone Sequence Records
BS12635.3prime Sequence
393 bp (393 high quality bases) assembled on 2006-10-13
> BS12635.3prime
ATGGTCTAGAAAGCTTCTATGGCAAATACTTTACCGGCACTAACATCTGG
CAGTGGTCACAGAAGTGCCACAGGTGCTTCTCCTCTGGGCACGGAATCTG
GCGATCCTTGGGCAAGGAAGTCACCGCCGAGGAGTTGCGATGGCAGGCTA
GCATATTTCCTAGCAGATTGTAGACAATAAATAGTGCCATAAGCCAGGCG
ATCTTGAAGAACAGTCCATCGGTGTCGTATATCCTGGGCAACATATAGAA
CATTTCCACCGAAAAAAATAATACCGTTCCCACTAGAACGAATCCCACTG
CGCTGGGATGTACGATCTTTGCGAACCGCTTCGGATTGGCGTTGGCAATG
TACTTGCATCCTATCATCATGAAGCACATGTCGACTGATAACT
BS12635.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-PB | 363 | CG13029-RB | 1..363 | 379..17 | 1815 | 100 | Minus |
CG13029-PC | 867 | CG13029-RC | 1..345 | 379..35 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-RC | 1047 | CG13029-RC | 75..420 | 380..35 | 1730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16860696..16861068 | 380..8 | 1835 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:09:44 has no hits.
BS12635.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:47 Download gff for
BS12635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-PB | 1..363 | 17..379 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:04 Download gff for
BS12635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RC | 75..420 | 35..380 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:49 Download gff for
BS12635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RC | 75..420 | 35..380 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:49 Download gff for
BS12635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16860696..16861068 | 8..380 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:04 Download gff for
BS12635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16853796..16854168 | 8..380 | 99 | | Minus |
BS12635.5prime Sequence
393 bp (393 high quality bases) assembled on 2006-10-13
> BS12635.5prime
GAAGTTATCAGTCGACATGTGCTTCATGATGATAGGATGCAAGTACATTG
CCAACGCCAATCCGAAGCGGTTCGCAAAGATCGTACATCCCAGCGCAGTG
GGATTCGTTCTAGTGGGAACGGTATTATTTTTTTCGGTGGAAATGTTCTA
TATGTTGCCCAGGATATACGACACCGATGGACTGTTCTTCAAGATCGCCT
GGCTTATGGCACTATTTATTGTCTACAATCTGCTAGGAAATATGCTAGCC
TGCCATCGCAACTCCTCGGCGGTGACTTCCTTGCCCAAGGATCGCCAGAT
TCCGTGCCCAGAGGAGAAGCACCTGTGGCACTTCTGTGACCACTGCCAGA
TGTTAGTGCCGGTAAAGTATTTGCCATAGAAGCTTTCTAGACC
BS12635.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-PB | 363 | CG13029-RB | 1..363 | 17..379 | 1815 | 100 | Plus |
CG13029-PC | 867 | CG13029-RC | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-RC | 1047 | CG13029-RC | 75..420 | 16..361 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16860696..16861068 | 16..388 | 1835 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:12:09 has no hits.
BS12635.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:48 Download gff for
BS12635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-PB | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:38 Download gff for
BS12635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RC | 75..420 | 16..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:40 Download gff for
BS12635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RC | 75..420 | 16..361 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:40 Download gff for
BS12635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16860696..16861068 | 16..388 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:38 Download gff for
BS12635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16853796..16854168 | 16..388 | 99 | | Plus |
BS12635.complete Sequence
395 bp assembled on 2006-11-01
GenBank Submission: FJ637243
> BS12635.complete
GAAGTTATCAGTCGACATGTGCTTCATGATGATAGGATGCAAGTACATTG
CCAACGCCAATCCGAAGCGGTTCGCAAAGATCGTACATCCCAGCGCAGTG
GGATTCGTTCTAGTGGGAACGGTATTATTTTTTTCGGTGGAAATGTTCTA
TATGTTGCCCAGGATATACGACACCGATGGACTGTTCTTCAAGATCGCCT
GGCTTATGGCACTATTTATTGTCTACAATCTGCTAGGAAATATGCTAGCC
TGCCATCGCAACTCCTCGGCGGTGACTTCCTTGCCCAAGGATCGCCAGAT
TCCGTGCCCAGAGGAGAAGCACCTGTGGCACTTCTGTGACCACTGCCAGA
TGTTAGTGCCGGTAAAGTATTTGCCATAGAAGCTTTCTAGACCAT
BS12635.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-RC | 867 | CG13029-PC | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-RC | 1047 | CG13029-RC | 75..420 | 16..361 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16860696..16861068 | 16..388 | 1835 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:20:47 has no hits.
BS12635.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:47 Download gff for
BS12635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RB | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:18:11 Download gff for
BS12635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RB | 75..447 | 16..388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:57 Download gff for
BS12635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RC | 76..420 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:47 Download gff for
BS12635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RB | 75..447 | 16..388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:15 Download gff for
BS12635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RC | 76..420 | 17..361 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:15 Download gff for
BS12635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16860697..16861059 | 17..379 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:57 Download gff for
BS12635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16853797..16854159 | 17..379 | 100 | | Plus |
BS12635.pep Sequence
Translation from 16 to 378
> BS12635.pep
MCFMMIGCKYIANANPKRFAKIVHPSAVGFVLVGTVLFFSVEMFYMLPRI
YDTDGLFFKIAWLMALFIVYNLLGNMLACHRNSSAVTSLPKDRQIPCPEE
KHLWHFCDHCQMLVPVKYLP*
BS12635.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-PC | 288 | CG13029-PC | 1..115 | 1..115 | 631 | 100 | Plus |
CG17197-PB | 290 | CG17197-PB | 1..115 | 1..115 | 372 | 53.9 | Plus |
CG17196-PA | 276 | CG17196-PA | 1..113 | 1..115 | 312 | 49.6 | Plus |
CG17195-PA | 283 | CG17195-PA | 1..111 | 1..113 | 303 | 45.1 | Plus |
CG17196-PC | 253 | CG17196-PC | 1..90 | 1..115 | 224 | 40 | Plus |