Clone BS12636 Report

Search the DGRC for BS12636

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG42675-RB
Protein status:BS12636.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12636.3prime Sequence

718 bp (635 high quality bases) assembled on 2006-10-13

> BS12636.3prime
ATGGTCTAGAAAGCTTTCAACGCCTCTTGGCCGGCGGACCGTTACGGGGC
TTGTTGTGCACCATGTTAACGCACTTGGGGATATGACGCTCCGCAGCCTG
TTCGTTGAATCGGCGACCACAGTGGGGACACTGGACATAGTCTGGATTCT
CCGAAGGTGGCGGTGGTGGCAGGTCGCTCAACTTGCCGCCGCGCGCCAAG
TGCGCCTTCACCTGCTTGGCCGCTCTAATCGACTGAATGAAGTCCTCGTG
CTTCTTACGCCAGTTGTTCTTCTTCACTCCAGTGGTCAGACCCTTCTGCT
GGGCAGCACTACTGTAAGTTGAACGGTTGCGATTGCCCTTCGACTTCATA
TTGAACGCCGCGGCCTCGGTGCCCTCGATCCGCTGCTTGGAGGCATCGAA
TATCTTGCGTTTGGTGGTCAGCATGCGCTGGCACACCTCCTCGTGCTTCG
CCAGACGATCCGTGTTGAAGTGGCGTCCGCAGTAGCGGCATAAAGCGGTG
CCCTCTGGGATTGCAGTCGTTGTGTCCATGTTGACCTTTTTAACTGGTGA
TTTGGGTTCCGCCCGTCGAACAAATGGTGGCGAAAGACGACCGGCTGTCG
GGGCAGCACCGGTTCCTCCACTTACTCGTTGGGTCGCCTGAATCTTGGGA
CTGCGTTGTGGGCGCGGGAGAACGTTGGTGGAGCGTGGTCTCCTGGGCCG
GCGGTGTCTTGCGGGTGA

BS12636.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10999-PA 1152 CG10999-RA 452..1152 718..17 3470 99.8 Minus
CG10999-PB 1152 CG10999-RB 452..1152 718..17 3470 99.8 Minus
CG10999-PC 564 CG10999-RC 18..564 563..17 2735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-RG 1448 CG42675-RG 686..1386 718..17 3485 99.9 Minus
CG42675-RF 1834 CG42675-RF 1072..1772 718..17 3485 99.9 Minus
CG42675-RE 1474 CG42675-RE 712..1412 718..17 3485 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5818248..5818758 527..17 2555 100 Minus
3R 32079331 3R 5817913..5818068 718..562 735 99.4 Minus
3R 32079331 3R 5818151..5818188 563..526 190 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:45:20 has no hits.

BS12636.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:48 Download gff for BS12636.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10999-PB 453..1152 17..717 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:48:03 Download gff for BS12636.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42675-RE 713..1412 17..717 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:23:48 Download gff for BS12636.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42675-RE 713..1412 17..717 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:23:48 Download gff for BS12636.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5817914..5818067 563..717 99 -> Minus
3R 5818152..5818187 527..562 100 -> Minus
3R 5818249..5818758 17..526 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:48:03 Download gff for BS12636.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1643636..1643789 563..717 99 -> Minus
arm_3R 1643874..1643909 527..562 100 -> Minus
arm_3R 1643971..1644480 17..526 100   Minus

BS12636.5prime Sequence

813 bp (727 high quality bases) assembled on 2006-10-13

> BS12636.5prime
GAAGTTATCAGTCGACATGGCGTCACAAGGTTCCGGAGATATGAAGACCT
CAAGGCTGGCGCAAATGCAGATGCGTTTCCAGCAGCGCACGCAACAGGAG
CAGGAGGTGCGTAGGCGGGAGCTGATGAGCACGAAGTCAAGTGCCGAGAA
CCTGGCCACTGGAGCACCCAGTGCCGCCACCACCAGGTTGATCGGGAATG
GGAAAGTGCGCCAGATGTTCGACGAGCGCCGCCGCGGGGCGGGCATTGAT
CGCAGCAATCCCCTCAAGCCGATCGGCACTCTGCCCTCGCCACCCGCCCA
AACAAAATCTCGCCCGCAGCCCCCAATGCAGCGTCTCGTCAAGGGCGTGG
CCGACTTGACCATGCGGGATGCACCAAATGCACCAGGCAGGAGGATCACT
AGTGACAGCAATAACAATAAGTTCGCCACGCCCCGCGGGACTTTGAATCG
CAACCTTAAGCCCGTGGTCACCCGCAAGACACCGCCGGCCCAGGAGACCA
CGCTCCACCAACGTTCTCCCGCGCCACAACGCAGTCCCAAGATTCAGGCG
ACCCAACGAGTAAGTGGAGGAACCGGTGCTGCCCCGACAGCCGGTCGTCT
TTCGCCACCATTTGTTCGACGGGCGGAACCCAAATCACCAGTTAAAAAGG
TCAACATGGACACAACGACTGCAATCCCAGAGGGCACCGCTTTATGCCGC
TACTGCGGACGCCACTTCAACACGGATCGTCTGGCGAAGCACGAGGAGGT
GTGCCAGCGCATGCTGACCACCAAACGCAAGATATTCAATGCCTCCAAGC
AGCGGATCGAGGG

BS12636.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10999-PA 1152 CG10999-RA 1..797 17..813 3960 99.8 Plus
CG10999-PB 1152 CG10999-RB 1..797 17..813 3960 99.8 Plus
CG10999-PC 564 CG10999-RC 18..209 622..813 935 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-RF 1834 CG42675-RF 621..1417 17..813 3970 99.9 Plus
CG42675-RC 1765 CG42675-RC 552..1348 17..813 3970 99.9 Plus
CG42675-RB 1688 CG42675-RB 475..1271 17..813 3970 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5817513..5818068 68..623 2780 100 Plus
3R 32079331 3R 5818248..5818403 658..813 765 99.4 Plus
3R 32079331 3R 5815230..5815283 17..70 270 100 Plus
3R 32079331 3R 5818151..5818188 622..659 190 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:33:44 has no hits.

BS12636.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:49 Download gff for BS12636.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10999-PB 1..797 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:38:02 Download gff for BS12636.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42675-RB 475..1271 17..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:12 Download gff for BS12636.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42675-RB 475..1271 17..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:12 Download gff for BS12636.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5815230..5815283 17..70 100 -> Plus
3R 5817516..5818067 71..622 100 -> Plus
3R 5818152..5818187 623..658 100 -> Plus
3R 5818249..5818403 659..813 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:38:02 Download gff for BS12636.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1640952..1641005 17..70 100 -> Plus
arm_3R 1643238..1643789 71..622 100 -> Plus
arm_3R 1643874..1643909 623..658 100 -> Plus
arm_3R 1643971..1644125 659..813 99   Plus

BS12636.complete Sequence

1184 bp assembled on 2007-10-26

GenBank Submission: FJ637244

> BS12636.complete
GAAGTTATCAGTCGACATGGCGTCACAAGGTTCCGGAGATATGAAGACCT
CAAGGCTGGCGCAAATGCAGATGCGTTTCCAGCAGCGCACGCAACAGGAG
CAGGAGGTGCGTAGGCGGGAGCTGATGAGCACGAAGTCAAGTGCCGAGAA
CCTGGCCACTGGAGCACCCAGTGCCGCCACCACCAGGTTGATCGGGAATG
GGAAAGTGCGCCAGATGTTCGACGAGCGCCGCCGCGGGGCGGGCATTGAT
CGCAGCAATCCCCTCAAGCCGATCGGCACTCTGCCCTCGCCACCCGCCCA
AACAAAATCTCGCCCGCAGCCCCCAATGCAGCGTCTCGTCAAGGGCGTGG
CCGACTTGACCATGCGGGATGCACCAAATGCACCAGGCAGGAGGATCACT
AGTGACAGCAATAACAATAAGTTCGCCACGCCCCGCGGGACTTTGAATCG
CAACCTTAAGCCCGTGGTCACCCGCAAGACACCGCCGGCCCAGGAGACCA
CGCTCCACCAACGTTCTCCCGCGCCACAACGCAGTCCCAAGATTCAGGCG
ACCCAACGAGTAAGTGGAGGAACCGGTGCTGCCCCGACAGCCGGTCGTCT
TTCGCCACCATTTGTTCGACGGGCGGAACCCAAATCACCAGTTAAAAAGG
TCAACATGGACACAACGACTGCAATCCCAGAGGGCACCGCTTTATGCCGC
TACTGCGGACGCCACTTCAACACGGATCGTCTGGCGAAGCACGAGGAGGT
GTGCCAGCGCATGCTGACCACCAAACGCAAGATATTCGATGCCTCCAAGC
AGCGGATCGAGGGCACCGAGGCCGCGGCGTTCAATATGAAGTCGAAGGGC
AATCGCAACCGTTCAACTTACAGTAGTGCTGCCCAGCAGAAGGGTCTGAC
CACTGGAGTGAAGAAGAACAACTGGCGTAAGAAGCACGAGGACTTCATTC
AGTCGATTAGAGCGGCCAAGCAGGTGAAGGCGCACTTGGCGCGCGGCGGC
AAGTTGAGCGACCTGCCACCACCGCCACCTTCGGAGAATCCAGACTATGT
CCAGTGTCCCCACTGTGGTCGCCGATTCAACGAACAGGCTGCGGAGCGTC
ATATCCCCAAGTGCGTTAACATGGTGCACAACAAGCCCCGTAACGGTCCG
CCGGCCAAGAGGCGTTGAAAGCTTTCTAGACCAT

BS12636.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-RF 1152 CG42675-PF 1..1152 17..1168 5760 100 Plus
CG42675-RC 1152 CG42675-PC 1..1152 17..1168 5760 100 Plus
CG42675-RB 1152 CG42675-PB 1..1152 17..1168 5760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-RF 1834 CG42675-RF 621..1772 17..1168 5760 100 Plus
CG42675-RC 1765 CG42675-RC 552..1703 17..1168 5760 100 Plus
CG42675-RB 1688 CG42675-RB 475..1626 17..1168 5760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5817513..5818068 68..623 2780 100 Plus
3R 32079331 3R 5818248..5818758 658..1168 2555 100 Plus
3R 32079331 3R 5815230..5815283 17..70 270 100 Plus
3R 32079331 3R 5818151..5818188 622..659 190 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:56:30 has no hits.

BS12636.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:15 Download gff for BS12636.complete
Subject Subject Range Query Range Percent Splice Strand
CG10999-RB 1..1152 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:46:10 Download gff for BS12636.complete
Subject Subject Range Query Range Percent Splice Strand
CG10999-RB 552..1703 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:12 Download gff for BS12636.complete
Subject Subject Range Query Range Percent Splice Strand
CG42675-RB 475..1625 17..1167 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:28 Download gff for BS12636.complete
Subject Subject Range Query Range Percent Splice Strand
CG10999-RB 552..1702 17..1167 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:28 Download gff for BS12636.complete
Subject Subject Range Query Range Percent Splice Strand
CG42675-RB 475..1625 17..1167 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:28 Download gff for BS12636.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5815230..5815283 17..70 100 -> Plus
3R 5817516..5818067 71..622 100 -> Plus
3R 5818152..5818187 623..658 100 -> Plus
3R 5818249..5818757 659..1167 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:12 Download gff for BS12636.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1640952..1641005 17..70 100 -> Plus
arm_3R 1643238..1643789 71..622 100 -> Plus
arm_3R 1643874..1643909 623..658 100 -> Plus
arm_3R 1643971..1644479 659..1167 100   Plus

BS12636.pep Sequence

Translation from 16 to 1167

> BS12636.pep
MASQGSGDMKTSRLAQMQMRFQQRTQQEQEVRRRELMSTKSSAENLATGA
PSAATTRLIGNGKVRQMFDERRRGAGIDRSNPLKPIGTLPSPPAQTKSRP
QPPMQRLVKGVADLTMRDAPNAPGRRITSDSNNNKFATPRGTLNRNLKPV
VTRKTPPAQETTLHQRSPAPQRSPKIQATQRVSGGTGAAPTAGRLSPPFV
RRAEPKSPVKKVNMDTTTAIPEGTALCRYCGRHFNTDRLAKHEEVCQRML
TTKRKIFDASKQRIEGTEAAAFNMKSKGNRNRSTYSSAAQQKGLTTGVKK
NNWRKKHEDFIQSIRAAKQVKAHLARGGKLSDLPPPPPSENPDYVQCPHC
GRRFNEQAAERHIPKCVNMVHNKPRNGPPAKRR*

BS12636.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-PF 383 CG42675-PF 1..383 1..383 2005 100 Plus
CG42675-PC 383 CG10999-PB 1..383 1..383 2005 100 Plus
CG42675-PB 383 CG10999-PA 1..383 1..383 2005 100 Plus
CG42675-PE 412 CG42675-PE 35..412 6..383 1920 97.1 Plus
CG42675-PG 427 CG42675-PG 63..427 19..383 1918 100 Plus