Clone Sequence Records
BS12636.3prime Sequence
718 bp (635 high quality bases) assembled on 2006-10-13
> BS12636.3prime
ATGGTCTAGAAAGCTTTCAACGCCTCTTGGCCGGCGGACCGTTACGGGGC
TTGTTGTGCACCATGTTAACGCACTTGGGGATATGACGCTCCGCAGCCTG
TTCGTTGAATCGGCGACCACAGTGGGGACACTGGACATAGTCTGGATTCT
CCGAAGGTGGCGGTGGTGGCAGGTCGCTCAACTTGCCGCCGCGCGCCAAG
TGCGCCTTCACCTGCTTGGCCGCTCTAATCGACTGAATGAAGTCCTCGTG
CTTCTTACGCCAGTTGTTCTTCTTCACTCCAGTGGTCAGACCCTTCTGCT
GGGCAGCACTACTGTAAGTTGAACGGTTGCGATTGCCCTTCGACTTCATA
TTGAACGCCGCGGCCTCGGTGCCCTCGATCCGCTGCTTGGAGGCATCGAA
TATCTTGCGTTTGGTGGTCAGCATGCGCTGGCACACCTCCTCGTGCTTCG
CCAGACGATCCGTGTTGAAGTGGCGTCCGCAGTAGCGGCATAAAGCGGTG
CCCTCTGGGATTGCAGTCGTTGTGTCCATGTTGACCTTTTTAACTGGTGA
TTTGGGTTCCGCCCGTCGAACAAATGGTGGCGAAAGACGACCGGCTGTCG
GGGCAGCACCGGTTCCTCCACTTACTCGTTGGGTCGCCTGAATCTTGGGA
CTGCGTTGTGGGCGCGGGAGAACGTTGGTGGAGCGTGGTCTCCTGGGCCG
GCGGTGTCTTGCGGGTGA
BS12636.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10999-PA | 1152 | CG10999-RA | 452..1152 | 718..17 | 3470 | 99.8 | Minus |
CG10999-PB | 1152 | CG10999-RB | 452..1152 | 718..17 | 3470 | 99.8 | Minus |
CG10999-PC | 564 | CG10999-RC | 18..564 | 563..17 | 2735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42675-RG | 1448 | CG42675-RG | 686..1386 | 718..17 | 3485 | 99.9 | Minus |
CG42675-RF | 1834 | CG42675-RF | 1072..1772 | 718..17 | 3485 | 99.9 | Minus |
CG42675-RE | 1474 | CG42675-RE | 712..1412 | 718..17 | 3485 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5818248..5818758 | 527..17 | 2555 | 100 | Minus |
3R | 32079331 | 3R | 5817913..5818068 | 718..562 | 735 | 99.4 | Minus |
3R | 32079331 | 3R | 5818151..5818188 | 563..526 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:45:20 has no hits.
BS12636.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:48 Download gff for
BS12636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10999-PB | 453..1152 | 17..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:48:03 Download gff for
BS12636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42675-RE | 713..1412 | 17..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:23:48 Download gff for
BS12636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42675-RE | 713..1412 | 17..717 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:23:48 Download gff for
BS12636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5817914..5818067 | 563..717 | 99 | -> | Minus |
3R | 5818152..5818187 | 527..562 | 100 | -> | Minus |
3R | 5818249..5818758 | 17..526 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:48:03 Download gff for
BS12636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1643636..1643789 | 563..717 | 99 | -> | Minus |
arm_3R | 1643874..1643909 | 527..562 | 100 | -> | Minus |
arm_3R | 1643971..1644480 | 17..526 | 100 | | Minus |
BS12636.5prime Sequence
813 bp (727 high quality bases) assembled on 2006-10-13
> BS12636.5prime
GAAGTTATCAGTCGACATGGCGTCACAAGGTTCCGGAGATATGAAGACCT
CAAGGCTGGCGCAAATGCAGATGCGTTTCCAGCAGCGCACGCAACAGGAG
CAGGAGGTGCGTAGGCGGGAGCTGATGAGCACGAAGTCAAGTGCCGAGAA
CCTGGCCACTGGAGCACCCAGTGCCGCCACCACCAGGTTGATCGGGAATG
GGAAAGTGCGCCAGATGTTCGACGAGCGCCGCCGCGGGGCGGGCATTGAT
CGCAGCAATCCCCTCAAGCCGATCGGCACTCTGCCCTCGCCACCCGCCCA
AACAAAATCTCGCCCGCAGCCCCCAATGCAGCGTCTCGTCAAGGGCGTGG
CCGACTTGACCATGCGGGATGCACCAAATGCACCAGGCAGGAGGATCACT
AGTGACAGCAATAACAATAAGTTCGCCACGCCCCGCGGGACTTTGAATCG
CAACCTTAAGCCCGTGGTCACCCGCAAGACACCGCCGGCCCAGGAGACCA
CGCTCCACCAACGTTCTCCCGCGCCACAACGCAGTCCCAAGATTCAGGCG
ACCCAACGAGTAAGTGGAGGAACCGGTGCTGCCCCGACAGCCGGTCGTCT
TTCGCCACCATTTGTTCGACGGGCGGAACCCAAATCACCAGTTAAAAAGG
TCAACATGGACACAACGACTGCAATCCCAGAGGGCACCGCTTTATGCCGC
TACTGCGGACGCCACTTCAACACGGATCGTCTGGCGAAGCACGAGGAGGT
GTGCCAGCGCATGCTGACCACCAAACGCAAGATATTCAATGCCTCCAAGC
AGCGGATCGAGGG
BS12636.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10999-PA | 1152 | CG10999-RA | 1..797 | 17..813 | 3960 | 99.8 | Plus |
CG10999-PB | 1152 | CG10999-RB | 1..797 | 17..813 | 3960 | 99.8 | Plus |
CG10999-PC | 564 | CG10999-RC | 18..209 | 622..813 | 935 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42675-RF | 1834 | CG42675-RF | 621..1417 | 17..813 | 3970 | 99.9 | Plus |
CG42675-RC | 1765 | CG42675-RC | 552..1348 | 17..813 | 3970 | 99.9 | Plus |
CG42675-RB | 1688 | CG42675-RB | 475..1271 | 17..813 | 3970 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5817513..5818068 | 68..623 | 2780 | 100 | Plus |
3R | 32079331 | 3R | 5818248..5818403 | 658..813 | 765 | 99.4 | Plus |
3R | 32079331 | 3R | 5815230..5815283 | 17..70 | 270 | 100 | Plus |
3R | 32079331 | 3R | 5818151..5818188 | 622..659 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:33:44 has no hits.
BS12636.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:49 Download gff for
BS12636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10999-PB | 1..797 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:38:02 Download gff for
BS12636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42675-RB | 475..1271 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:12 Download gff for
BS12636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42675-RB | 475..1271 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:12 Download gff for
BS12636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5815230..5815283 | 17..70 | 100 | -> | Plus |
3R | 5817516..5818067 | 71..622 | 100 | -> | Plus |
3R | 5818152..5818187 | 623..658 | 100 | -> | Plus |
3R | 5818249..5818403 | 659..813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:38:02 Download gff for
BS12636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1640952..1641005 | 17..70 | 100 | -> | Plus |
arm_3R | 1643238..1643789 | 71..622 | 100 | -> | Plus |
arm_3R | 1643874..1643909 | 623..658 | 100 | -> | Plus |
arm_3R | 1643971..1644125 | 659..813 | 99 | | Plus |
BS12636.complete Sequence
1184 bp assembled on 2007-10-26
GenBank Submission: FJ637244
> BS12636.complete
GAAGTTATCAGTCGACATGGCGTCACAAGGTTCCGGAGATATGAAGACCT
CAAGGCTGGCGCAAATGCAGATGCGTTTCCAGCAGCGCACGCAACAGGAG
CAGGAGGTGCGTAGGCGGGAGCTGATGAGCACGAAGTCAAGTGCCGAGAA
CCTGGCCACTGGAGCACCCAGTGCCGCCACCACCAGGTTGATCGGGAATG
GGAAAGTGCGCCAGATGTTCGACGAGCGCCGCCGCGGGGCGGGCATTGAT
CGCAGCAATCCCCTCAAGCCGATCGGCACTCTGCCCTCGCCACCCGCCCA
AACAAAATCTCGCCCGCAGCCCCCAATGCAGCGTCTCGTCAAGGGCGTGG
CCGACTTGACCATGCGGGATGCACCAAATGCACCAGGCAGGAGGATCACT
AGTGACAGCAATAACAATAAGTTCGCCACGCCCCGCGGGACTTTGAATCG
CAACCTTAAGCCCGTGGTCACCCGCAAGACACCGCCGGCCCAGGAGACCA
CGCTCCACCAACGTTCTCCCGCGCCACAACGCAGTCCCAAGATTCAGGCG
ACCCAACGAGTAAGTGGAGGAACCGGTGCTGCCCCGACAGCCGGTCGTCT
TTCGCCACCATTTGTTCGACGGGCGGAACCCAAATCACCAGTTAAAAAGG
TCAACATGGACACAACGACTGCAATCCCAGAGGGCACCGCTTTATGCCGC
TACTGCGGACGCCACTTCAACACGGATCGTCTGGCGAAGCACGAGGAGGT
GTGCCAGCGCATGCTGACCACCAAACGCAAGATATTCGATGCCTCCAAGC
AGCGGATCGAGGGCACCGAGGCCGCGGCGTTCAATATGAAGTCGAAGGGC
AATCGCAACCGTTCAACTTACAGTAGTGCTGCCCAGCAGAAGGGTCTGAC
CACTGGAGTGAAGAAGAACAACTGGCGTAAGAAGCACGAGGACTTCATTC
AGTCGATTAGAGCGGCCAAGCAGGTGAAGGCGCACTTGGCGCGCGGCGGC
AAGTTGAGCGACCTGCCACCACCGCCACCTTCGGAGAATCCAGACTATGT
CCAGTGTCCCCACTGTGGTCGCCGATTCAACGAACAGGCTGCGGAGCGTC
ATATCCCCAAGTGCGTTAACATGGTGCACAACAAGCCCCGTAACGGTCCG
CCGGCCAAGAGGCGTTGAAAGCTTTCTAGACCAT
BS12636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42675-RF | 1152 | CG42675-PF | 1..1152 | 17..1168 | 5760 | 100 | Plus |
CG42675-RC | 1152 | CG42675-PC | 1..1152 | 17..1168 | 5760 | 100 | Plus |
CG42675-RB | 1152 | CG42675-PB | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42675-RF | 1834 | CG42675-RF | 621..1772 | 17..1168 | 5760 | 100 | Plus |
CG42675-RC | 1765 | CG42675-RC | 552..1703 | 17..1168 | 5760 | 100 | Plus |
CG42675-RB | 1688 | CG42675-RB | 475..1626 | 17..1168 | 5760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5817513..5818068 | 68..623 | 2780 | 100 | Plus |
3R | 32079331 | 3R | 5818248..5818758 | 658..1168 | 2555 | 100 | Plus |
3R | 32079331 | 3R | 5815230..5815283 | 17..70 | 270 | 100 | Plus |
3R | 32079331 | 3R | 5818151..5818188 | 622..659 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:56:30 has no hits.
BS12636.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:15 Download gff for
BS12636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10999-RB | 1..1152 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:46:10 Download gff for
BS12636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10999-RB | 552..1703 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:12 Download gff for
BS12636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42675-RB | 475..1625 | 17..1167 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:28 Download gff for
BS12636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10999-RB | 552..1702 | 17..1167 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:28 Download gff for
BS12636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42675-RB | 475..1625 | 17..1167 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:28 Download gff for
BS12636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5815230..5815283 | 17..70 | 100 | -> | Plus |
3R | 5817516..5818067 | 71..622 | 100 | -> | Plus |
3R | 5818152..5818187 | 623..658 | 100 | -> | Plus |
3R | 5818249..5818757 | 659..1167 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:12 Download gff for
BS12636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1640952..1641005 | 17..70 | 100 | -> | Plus |
arm_3R | 1643238..1643789 | 71..622 | 100 | -> | Plus |
arm_3R | 1643874..1643909 | 623..658 | 100 | -> | Plus |
arm_3R | 1643971..1644479 | 659..1167 | 100 | | Plus |
BS12636.pep Sequence
Translation from 16 to 1167
> BS12636.pep
MASQGSGDMKTSRLAQMQMRFQQRTQQEQEVRRRELMSTKSSAENLATGA
PSAATTRLIGNGKVRQMFDERRRGAGIDRSNPLKPIGTLPSPPAQTKSRP
QPPMQRLVKGVADLTMRDAPNAPGRRITSDSNNNKFATPRGTLNRNLKPV
VTRKTPPAQETTLHQRSPAPQRSPKIQATQRVSGGTGAAPTAGRLSPPFV
RRAEPKSPVKKVNMDTTTAIPEGTALCRYCGRHFNTDRLAKHEEVCQRML
TTKRKIFDASKQRIEGTEAAAFNMKSKGNRNRSTYSSAAQQKGLTTGVKK
NNWRKKHEDFIQSIRAAKQVKAHLARGGKLSDLPPPPPSENPDYVQCPHC
GRRFNEQAAERHIPKCVNMVHNKPRNGPPAKRR*
BS12636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42675-PF | 383 | CG42675-PF | 1..383 | 1..383 | 2005 | 100 | Plus |
CG42675-PC | 383 | CG10999-PB | 1..383 | 1..383 | 2005 | 100 | Plus |
CG42675-PB | 383 | CG10999-PA | 1..383 | 1..383 | 2005 | 100 | Plus |
CG42675-PE | 412 | CG42675-PE | 35..412 | 6..383 | 1920 | 97.1 | Plus |
CG42675-PG | 427 | CG42675-PG | 63..427 | 19..383 | 1918 | 100 | Plus |