Clone BS12637 Report

Search the DGRC for BS12637

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptMESK2-RC
Protein status:BS12637.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12637.3prime Sequence

811 bp (741 high quality bases) assembled on 2006-10-13

> BS12637.3prime
ATGGTCTAGAAAGCTTCTAGATGAAGCTGCTCAACTGAGTGCCATCCCAG
TCGCCGGGTCGGAAGTACTTGACGTAGCCCTCGCCCTGCAAGAAGAGCCG
GAAGGCCTCGGCCAGCTTAGCCGGCTGCTCCTCCAGCACCAAAGCGCAAT
CGGAAATCTTCATCCACGATGAGTTTGTAGGATCTAGACGGCCATTGAAG
GTCACCGTGTCGTCGACGTGCGGCGAGAGCGAACCCGTAATATTGATCAC
CGGCATCTTCAGCGTGGTGGCCGCCGTTTCGCTGCCCGGAGTTCCTGGCG
GAGTGCGCGCCAGATGCAGGTCGTTGCGATGGATGTACGCGTTGATCAGC
ATGGCAAGATTGGTCGGATTAACGCCACGCTCGAAGTGCTGCTTGTACAT
CTGCACCAGGTCGTGATTGCGCTCCTCCGGATTGCGTCCGAAGTGGTGCC
ACATCAGATAATCGATCACGCCCTGTGTCATGCCCTTGGTGCGCAAGAAG
CGGGCATTGAAGCTCTGGTAGCCCCACTCGATCCAGCCCGACTGCGTGGA
CACGCAATTGATCAGGCACAGGGCGCCCACCTTGTCCGGATGGGCGTGAG
CGAAACGTGCCAGAATATTCGCCCCGGCACCAACGCCGAAACCAATCACC
GACTTTAGGCCAAAGTGGGATAGCACGAAAAGCAGCTGGGCGGCCAGATC
ATCCATGGTCGGATAGACGTAATCCTCTGGCAAAGTGGGTGCACCCTCCT
CCTGGCCAGGAGCAGTCACATGGTAAACACAGAAGTTCTCCAGCAGACCT
CGCATCACTGG

BS12637.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG15669-PK 1230 MESK2-RK 436..1230 811..17 3800 99.1 Minus
CG15669-PC 1314 MESK2-RC 520..1314 811..17 3800 99.1 Minus
CG15669-PB 1278 MESK2-RB 520..1259 811..72 3525 99 Minus
CG15669-PA 1344 MESK2-RA 520..1258 811..73 3520 99 Minus
CG15669-PF 1344 MESK2-RF 520..1258 811..73 3520 99 Minus
CG15669-PJ 1407 MESK2-RJ 223..961 811..73 3520 99 Minus
CG15669-PD 1098 MESK2-RD 274..1012 811..73 3520 99 Minus
CG15669-PE 1344 MESK2-RE 520..1258 811..73 3520 99 Minus
CG15669-PI 1458 MESK2-RI 274..1012 811..73 3520 99 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RC 2193 CG15669-RC 1122..1919 811..14 3885 99.1 Minus
MESK2-RK 2109 CG15669-RK 1038..1835 811..14 3885 99.1 Minus
MESK2-RB 1926 CG15669-RB 1122..1861 811..72 3595 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511968 722..158 2735 98.9 Minus
2R 25286936 2R 21512091..21512177 159..73 435 100 Minus
2R 25286936 2R 21511155..21511243 811..723 430 98.9 Minus
2R 25286936 2R 21512392..21512451 73..14 300 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:58:35 has no hits.

BS12637.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:49 Download gff for BS12637.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15669-PC 520..1314 17..811 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:35 Download gff for BS12637.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RK 1038..1835 14..811 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:35 Download gff for BS12637.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RK 1038..1835 14..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:35 Download gff for BS12637.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21511155..21511243 723..811 98 -> Minus
2R 21511404..21511968 158..722 98 -> Minus
2R 21512093..21512177 73..157 100 -> Minus
2R 21512393..21512451 14..72 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:35 Download gff for BS12637.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17398660..17398748 723..811 98 -> Minus
arm_2R 17398909..17399473 158..722 98 -> Minus
arm_2R 17399598..17399682 73..157 100 -> Minus
arm_2R 17399898..17399956 14..72 100   Minus

BS12637.5prime Sequence

854 bp (759 high quality bases) assembled on 2006-10-13

> BS12637.5prime
GAAGTTATCAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGC
CGGCCGTCAATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCC
ACGGCCCCGCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGC
CATCAAGTCCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCC
TGCCGGTCATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACA
CTGACCACCAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACA
TCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCT
CCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGC
GAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACA
GGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCA
ACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGT
CTGCTGGAGAACTTCTGTGTTTACCATGTGACTGCTCCTGGCCAGGAGGA
GGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATC
TGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTG
ATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCACGTTTCGCTCA
CGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGTCCA
CGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGCTTC
TTGC

BS12637.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15669-PB 1278 MESK2-RB 1..838 17..854 4140 99.7 Plus
CG15669-PA 1344 MESK2-RA 1..838 17..854 4140 99.7 Plus
CG15669-PF 1344 MESK2-RF 1..838 17..854 4140 99.7 Plus
CG15669-PE 1344 MESK2-RE 1..838 17..854 4140 99.7 Plus
CG15669-PC 1314 MESK2-RC 1..838 17..854 4140 99.7 Plus
CG15669-PD 1098 MESK2-RD 1..592 263..854 2910 99.6 Plus
CG15669-PI 1458 MESK2-RI 1..592 263..854 2910 99.6 Plus
CG15669-PK 1230 MESK2-RK 209..754 309..854 2680 99.6 Plus
CG15669-PJ 1407 MESK2-RJ 1..541 314..854 2655 99.6 Plus
CG15669-PK 1230 MESK2-RK 1..209 17..225 1045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RC 2193 CG15669-RC 602..1440 16..854 4165 99.8 Plus
MESK2-RE 2619 CG15669-RE 575..1413 16..854 4165 99.8 Plus
MESK2-RF 2425 CG15669-RF 381..1219 16..854 4165 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511633 625..854 1135 99.6 Plus
2R 25286936 2R 21507513..21507722 16..225 1050 100 Plus
2R 25286936 2R 21510866..21511060 309..503 975 100 Plus
2R 25286936 2R 21511123..21511243 504..624 590 99.2 Plus
2R 25286936 2R 21510115..21510201 223..309 435 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:58:49 has no hits.

BS12637.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:49 Download gff for BS12637.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15669-PE 1..838 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:37 Download gff for BS12637.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RF 381..1219 16..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:37 Download gff for BS12637.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RF 381..1219 16..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:37 Download gff for BS12637.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21507513..21507722 16..225 100 -> Plus
2R 21510118..21510201 226..309 100 -> Plus
2R 21510867..21511060 310..503 100 -> Plus
2R 21511123..21511243 504..624 99 -> Plus
2R 21511404..21511633 625..854 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:37 Download gff for BS12637.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17395018..17395227 16..225 100 -> Plus
arm_2R 17397623..17397706 226..309 100 -> Plus
arm_2R 17398372..17398565 310..503 100 -> Plus
arm_2R 17398628..17398748 504..624 99 -> Plus
arm_2R 17398909..17399138 625..854 99   Plus

BS12637.complete Sequence

1346 bp assembled on 2006-11-01

GenBank Submission: FJ637245

> BS12637.complete
GAAGTTATCAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGC
CGGCCGTCAATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCC
ACGGCCCCGCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGC
CATCAAGTCCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCC
TGCCGGTCATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACA
CTGACCACCAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACA
TCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCT
CCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGC
GAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACA
GGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCA
ACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGT
CTGCTGGAGAACTTCTGTGTTTACCATGTGACTGCTCCTGGCCAGGAGGA
GGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATC
TGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTG
ATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCACGTTTCGCTCA
CGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGTCCA
CGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGCTTC
TTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGTGGCA
CCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAGATGT
ACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCATGCTG
ATCAACGCGTACATCCATCGCAACGACCTGCATCTGGCGCGCACTCCGCC
AGGAACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCGGTGA
TCAATATTACGGGTTCGCTCTCGCCGCACGTCGACGACACGGTGACCTTC
AATGGCCGTCTAGATCCTACAAACTCATCGTGGATGAAGATTTCCGATTG
CGCTTTGGTGCTGGAGGAGCAGCCGGCTAAGCTGGCCGAGGCCTTCCGGC
TCTTCTTGCAGGGCGAGGGCTACGTCAAGTACTTCCGACCCGGCGACTGG
GATGGCACTCAGTTGAGCAGCTTCATCTAGAAGCTTTCTAGACCAT

BS12637.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RC 1314 CG15669-PC 1..1314 17..1330 6465 99.5 Plus
MESK2-RB 1278 CG15669-PB 1..1259 17..1275 6190 99.4 Plus
MESK2-RE 1344 CG15669-PE 1..1258 17..1274 6185 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RC 2193 CG15669-RC 602..1919 16..1333 6485 99.5 Plus
MESK2-RB 1926 CG15669-RB 602..1861 16..1275 6195 99.4 Plus
MESK2-RE 2619 CG15669-RE 575..1833 16..1274 6190 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511968 625..1189 2735 98.9 Plus
2R 25286936 2R 21507513..21507722 16..225 1050 100 Plus
2R 25286936 2R 21510866..21511060 309..503 975 100 Plus
2R 25286936 2R 21511123..21511243 504..624 590 99.2 Plus
2R 25286936 2R 21510115..21510201 223..309 435 100 Plus
2R 25286936 2R 21512091..21512177 1188..1274 435 100 Plus
2R 25286936 2R 21512392..21512451 1274..1333 300 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:22:23 has no hits.

BS12637.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:32 Download gff for BS12637.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RC 1..1314 17..1330 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:53 Download gff for BS12637.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RC 613..1930 16..1333 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:18 Download gff for BS12637.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RC 603..1916 17..1330 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:32 Download gff for BS12637.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RC 613..1930 16..1333 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:06 Download gff for BS12637.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RC 603..1916 17..1330 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:06 Download gff for BS12637.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21512393..21512448 1275..1330 100   Plus
2R 21507514..21507722 17..225 100 -> Plus
2R 21510118..21510201 226..309 100 -> Plus
2R 21510867..21511060 310..503 100 -> Plus
2R 21511123..21511243 504..624 99 -> Plus
2R 21511404..21511968 625..1189 98 -> Plus
2R 21512093..21512177 1190..1274 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:18 Download gff for BS12637.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17395019..17395227 17..225 100 -> Plus
arm_2R 17397623..17397706 226..309 100 -> Plus
arm_2R 17398372..17398565 310..503 100 -> Plus
arm_2R 17398628..17398748 504..624 99 -> Plus
arm_2R 17398909..17399473 625..1189 98 -> Plus
arm_2R 17399598..17399682 1190..1274 100 -> Plus
arm_2R 17399898..17399953 1275..1330 100   Plus

BS12637.pep Sequence

Translation from 16 to 1329

> BS12637.pep
MPQSEGGYVSLPAVNGNGGAIYQSTTEPTAPPSVFASVKRAIGQAIKSSP
TDSEELLRSDRLPVIVGGSRDRDKSGKTLTTKMPSAPTHTAEEAHLLGTM
PVDPMDDIELRSVQLQFPNARGSILEACEQRRVPTDKGDVHVAIQGDTAK
PAIITYHDLGLNYATSFAGFFNFPVMRGLLENFCVYHVTAPGQEEGAPTL
PEDYVYPTMDDLAAQLLFVLSHFGLKSVIGFGVGAGANILARFAHAHPDK
VGALCLINCVSTQSGWIEWGYQSFNARFLRTKGMTQGVIDYLMWHHFGRN
PEERNHDLVQMYKQHFERGVNPTNLAMLINAYIHRNDLHLARTPPGTPGS
ETAATTLKMPVINITGSLSPHVDDTVTFNGRLDPTNSSWMKISDCALVLE
EQPAKLAEAFRLFLQGEGYVKYFRPGDWDGTQLSSFI*

BS12637.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-PC 437 CG15669-PC 1..437 1..437 2315 100 Plus
MESK2-PB 425 CG15669-PB 1..420 1..420 2218 100 Plus
MESK2-PE 447 CG15669-PE 1..419 1..419 2214 100 Plus
MESK2-PF 447 CG15669-PF 1..419 1..419 2214 100 Plus
MESK2-PA 447 CG15669-PA 1..419 1..419 2214 100 Plus