Clone BS12638 Report

Search the DGRC for BS12638

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptkat-60L1-RB
Protein status:BS12638.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12638.3prime Sequence

768 bp (767 high quality bases) assembled on 2006-10-13

> BS12638.3prime
ATGGTCTAGAAAGCTTCTAGCACGACCCGTATTCCTCCATCCACTTTTCG
AAGCGGGCAACGTCATCGGCAGAGACGGACTTCTTGGTGCGCAGACGGGC
GTCCTGGAAGTCCTGCAAAGTAATCGGCTGGTCAACCTCCTCGCGTCGGA
TTTGCTTAATCTGATCGGGAGTGCGTCCGGAAATGAGGCGCCGCATGGCC
ATCATGGAGGCGTCCCGGCACACGTTGCTTATGTCCGATCCCGAGTAGCC
CTGCAGTTCGTCGCCGATTATTCCGGTGTTCAGACTGGGCGACAGGCATA
CGTCCTTCAGGCAGAGCTTGAGGAGAGCCGATCGGGTGCCCTCGTTTGGG
AGAGGAATATAGATTCGCTTTTCAAAACGTCTCCGGAAAGCCTCATCGAT
GTCCCACGGGTGATTGGTGGCCGCCAGCACCATGATCACCTTCTCCTCCT
GCATGCTTGCGTTGAGTCCGTCCATTTGGATGAGCAGCTCGGCCTTGAAC
CGCCGACTGGCCTCGTGCTCCGAGTCACTGCCCCTGGAGGCGCATAGGGC
GTCTATCTCGTCGATGAAAATGGTGCTGGGCGCATAAAATCGGGCCATCT
CGAACAGGAGACGCACCAGCTTCTCGCTCTCTCCTCGGTATTTCGAGGTC
AGGGTCGAGGAGGACACGTTGAAGAAGGTGGTTCCACATTCTGTGGCCAC
CGCCTTGGCCAGCATGGTTTTGCCTGTTCCCGGCGGACCGACCATCAACA
CTCCACGCCACGGCCGGC

BS12638.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1193-PA 1818 CG1193-RA 1067..1818 768..17 3760 100 Minus
CG1193-PB 2010 CG1193-RB 1259..2010 768..17 3760 100 Minus
CG9475-PB 1170 Rpt3R-RB 544..573 724..695 150 100 Minus
CG9475-PA 1266 Rpt3R-RA 640..669 724..695 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RH 2313 CG1193-RH 1217..1968 768..17 3760 100 Minus
kat-60L1-RG 2479 CG1193-RG 1383..2134 768..17 3760 100 Minus
kat-60L1-RF 2172 CG1193-RF 1205..1956 768..17 3760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5786314..5786739 768..343 2130 100 Minus
3R 32079331 3R 5786794..5787120 343..17 1635 100 Minus
3R 32079331 3R 5228408..5228812 347..751 540 75.6 Plus
Blast to na_te.dros performed on 2015-02-10 22:37:48 has no hits.

BS12638.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:50 Download gff for BS12638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1193-PB 1259..2010 17..768 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:53:05 Download gff for BS12638.3prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RF 1205..1956 17..768 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:32 Download gff for BS12638.3prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RF 1205..1956 17..768 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:32 Download gff for BS12638.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5786795..5787120 17..342 100   Minus
3R 5786314..5786739 343..768 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:53:05 Download gff for BS12638.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1612036..1612461 343..768 100 -> Minus
arm_3R 1612517..1612842 17..342 100   Minus

BS12638.5prime Sequence

801 bp (761 high quality bases) assembled on 2006-10-13

> BS12638.5prime
GAAGTTATCAGTCGACATGTTCAACACCAGTGCACAGAATTGGTTCGGCA
TGGGCCAGACAGCCGTGGATCCGAGCGGCGGAGTGGCCCAGTTGCTCAAC
AACAATTCGAGTCTCTACAATCAGCAGCAGCAGCAGGCGGCGGCGGCGCA
ACATTCCTTCATGCGCCAGCGATCGCTGACCAGCTCCAATCCCGTCCTGG
GGCGTTCAAACGCCTTGGCCACGCGGCCCCAGTCGCCGCCCAACGTCCAG
GTTGAGTACGAGGTGGCGGTACCCTTCGTTCCCACCTACCGGCACACTCC
ATACCACTCGCTCTGGGATCTGCACCAATGCTCTTCCACACCTCCGACAA
GCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCGACTCGCTA
TCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCTTCCCGGAA
CGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGACAGCAGAGC
GCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGGGATTGGGC
ATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCCACGCAAGA
AGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAATGCCATTTCCGT
CGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGCGGGATCCC
GAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGCGAACAGCAGCAG
CCTCAGCCAGAGCCACCACGGAAGTGCTGGGAACGTGGGATTGGCGGGCG
C

BS12638.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1193-PB 2010 CG1193-RB 1..785 17..801 3925 100 Plus
CG1193-PA 1818 CG1193-RA 122..593 330..801 2360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RC 2338 CG1193-RC 112..897 16..801 3930 100 Plus
kat-60L1-RB 2467 CG1193-RB 112..897 16..801 3930 100 Plus
kat-60L1-RG 2479 CG1193-RG 112..909 16..801 3800 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5783216..5783530 16..330 1575 100 Plus
3R 32079331 3R 5785112..5785381 330..599 1350 100 Plus
3R 32079331 3R 5785440..5785643 598..801 1020 100 Plus
Blast to na_te.dros performed 2015-02-10 22:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3243..3321 689..769 120 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2361 724..757 107 79.4 Plus

BS12638.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:50 Download gff for BS12638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1193-PB 1..785 17..801 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:53:07 Download gff for BS12638.5prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RB 106..897 9..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:47 Download gff for BS12638.5prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RB 106..897 9..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:47 Download gff for BS12638.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5783210..5783530 9..330 99 -> Plus
3R 5785113..5785381 331..599 100 -> Plus
3R 5785442..5785643 600..801 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:53:07 Download gff for BS12638.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1608932..1609252 9..330 99 -> Plus
arm_3R 1610835..1611103 331..599 100 -> Plus
arm_3R 1611164..1611365 600..801 100   Plus

BS12638.complete Sequence

2042 bp assembled on 2007-12-11

GenBank Submission: FJ637246

> BS12638.complete
GAAGTTATCAGTCGACATGTTCAACACCAGTGCACAGAATTGGTTCGGCA
TGGGCCAGACAGCCGTGGATCCGAGCGGCGGAGTGGCCCAGTTGCTCAAC
AACAATTCGAGTCTCTACAATCAGCAGCAGCAGCAGGCGGCGGCGGCGCA
ACATTCCTTCATGCGCCAGCGATCGCTGACCAGCTCCAATCCCGTCCTGG
GGCGTTCAAACGCCTTGGCCACGCGGCCCCAGTCGCCGCCCAACGTCCAG
GTTGAGTACGAGGTGGCGGTACCCTTCGTTCCCACCTACCGGCACACTCC
ATACCACTCGCTCTGGGATCTGCACCAATGCTCTTCCACACCTCCGACAA
GCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCGACTCGCTA
TCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCTTCCCGGAA
CGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGACAGCAGAGC
GCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGGGATTGGGC
ATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCCACGCAAGA
AGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAATGCCATTTCCGT
CGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGCGGGATCCC
GAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGCGAACAGCAGCAG
CCTCAGCCAGAGCCACCACGGAAGTGCTGGGAACGTGGGATTGGCGGGCG
CAGGAGCACCTACACCCGCCGCCAGCATGGGCACAATGCGCCTGGGGCGA
CCAGCAAGGGCATCCGCCATGACCGCCGCCTTGCGGAAGAGCCGATCCGT
GGAGCGCCTGCGGGCCAGGAAGCTCAGCACAAACACCCAGCTTAACTTGA
AGCACAAGCCGGTTAAGAAGAACTCGCTGGACGAAAACTCCAACTCGGAT
GACCAAGACGCCACCACATCCCTGGAAGACAACTCGCACGCCCAGTCCCT
AGCCACCAGCCACAACACGCCCAAATGCTCACCGAAGACCAAGGCCAAGC
ACTTCTCGCCCTTGGGCTACGAGGTTCATCTGGTGGACACCCTGGAGAAG
GACATTCTGCAGCGCCATCCGTGCATCAAGTGGACCGATGTGGCTGGGCT
CAATGAGGCCAAGACAATACTCCAGGAAGCAGTGGTGCTTCCGGTAATCA
TGCCGGAGTTCTTCAAGGGAATCCGCCGGCCGTGGCGTGGAGTGTTGATG
GTCGGTCCGCCGGGAACAGGCAAAACCATGCTGGCCAAGGCGGTGGCCAC
AGAATGTGGAACCACCTTCTTCAACGTGTCCTCCTCGACCCTGACCTCGA
AATACCGAGGAGAGAGCGAGAAGCTGGTGCGTCTCCTGTTCGAGATGGCC
CGATTTTATGCGCCCAGCACCATTTTCATCGACGAGATAGACGCCCTATG
CGCCTCCAGGGGCAGTGACTCGGAGCACGAGGCCAGTCGGCGGTTCAAGG
CCGAGCTGCTCATCCAAATGGACGGACTCAACGCAAGCATGCAGGAGGAG
AAGGTGATCATGGTGCTGGCGGCCACCAATCACCCGTGGGACATCGATGA
GGCTTTCCGGAGACGTTTTGAAAAGCGAATCTATATTCCTCTCCCAAACG
AGGGCACCCGATCGGCTCTCCTCAAGCTCTGCCTGAAGGACGTATGCCTG
TCGCCCAGTCTGAACACCGGAATAATCGGCGACGAACTGCAGGGCTACTC
GGGATCGGACATAAGCAACGTGTGCCGGGACGCCTCCATGATGGCCATGC
GGCGCCTCATTTCCGGACGCACTCCCGATCAGATTAAGCAAATCCGACGC
GAGGAGGTTGACCAGCCGATTACTTTGCAGGACTTCCAGGACGCCCGTCT
GCGCACCAAGAAGTCCGTCTCTGCCGATGACGTTGCCCGCTTCGAAAAGT
GGATGGAGGAATACGGGTCGTGCTAGAAGCTTTCTAGACCAT

BS12638.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RC 2010 CG1193-PC 1..2010 17..2026 10050 100 Plus
kat-60L1-RB 2010 CG1193-PB 1..2010 17..2026 10050 100 Plus
kat-60L1-RG 2022 CG1193-PG 1..2022 17..2026 9895 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RC 2338 CG1193-RC 112..2122 16..2026 10055 100 Plus
kat-60L1-RB 2467 CG1193-RB 112..2122 16..2026 10055 100 Plus
kat-60L1-RG 2479 CG1193-RG 112..2134 16..2026 9900 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5785440..5786068 598..1226 3145 100 Plus
3R 32079331 3R 5786263..5786739 1224..1700 2385 100 Plus
3R 32079331 3R 5786794..5787120 1700..2026 1635 100 Plus
3R 32079331 3R 5783216..5783530 16..330 1575 100 Plus
3R 32079331 3R 5785112..5785381 330..599 1350 100 Plus
3R 32079331 3R 5228408..5228838 1696..1266 565 75.4 Minus
Blast to na_te.dros performed 2014-11-27 19:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3243..3321 689..769 120 64.2 Plus

BS12638.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:16 Download gff for BS12638.complete
Subject Subject Range Query Range Percent Splice Strand
CG1193-RB 1..2010 17..2026 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:46:12 Download gff for BS12638.complete
Subject Subject Range Query Range Percent Splice Strand
CG1193-RB 106..2122 9..2026 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:07 Download gff for BS12638.complete
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RB 118..2122 22..2026 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:01 Download gff for BS12638.complete
Subject Subject Range Query Range Percent Splice Strand
CG1193-RB 118..2122 22..2026 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:59 Download gff for BS12638.complete
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RB 118..2122 22..2026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:59 Download gff for BS12638.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5783222..5783530 22..330 100 -> Plus
3R 5785113..5785381 331..599 100 -> Plus
3R 5785442..5786067 600..1225 100 -> Plus
3R 5786265..5786739 1226..1700 100 -> Plus
3R 5786795..5787120 1701..2026 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:07 Download gff for BS12638.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1608944..1609252 22..330 100 -> Plus
arm_3R 1610835..1611103 331..599 100 -> Plus
arm_3R 1611164..1611789 600..1225 100 -> Plus
arm_3R 1611987..1612461 1226..1700 100 -> Plus
arm_3R 1612517..1612842 1701..2026 100   Plus

BS12638.pep Sequence

Translation from 16 to 2025

> BS12638.pep
MFNTSAQNWFGMGQTAVDPSGGVAQLLNNNSSLYNQQQQQAAAAQHSFMR
QRSLTSSNPVLGRSNALATRPQSPPNVQVEYEVAVPFVPTYRHTPYHSLW
DLHQCSSTPPTSLSHMARMMDSLILDSLSPFGFTKITATSRPSRNASLKK
SSEGGHSSTAERHRPVNNLGSNAPGGLGIGGSVPLRSKQRLPTQEVAPQP
RASQTAQMPFPSQQQDNRWVSSLRRRDPELQPTLPSINSNANSSSLSQSH
HGSAGNVGLAGAGAPTPAASMGTMRLGRPARASAMTAALRKSRSVERLRA
RKLSTNTQLNLKHKPVKKNSLDENSNSDDQDATTSLEDNSHAQSLATSHN
TPKCSPKTKAKHFSPLGYEVHLVDTLEKDILQRHPCIKWTDVAGLNEAKT
ILQEAVVLPVIMPEFFKGIRRPWRGVLMVGPPGTGKTMLAKAVATECGTT
FFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDALCASRGS
DSEHEASRRFKAELLIQMDGLNASMQEEKVIMVLAATNHPWDIDEAFRRR
FEKRIYIPLPNEGTRSALLKLCLKDVCLSPSLNTGIIGDELQGYSGSDIS
NVCRDASMMAMRRLISGRTPDQIKQIRREEVDQPITLQDFQDARLRTKKS
VSADDVARFEKWMEEYGSC*

BS12638.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-PC 669 CG1193-PC 1..669 1..669 3451 100 Plus
kat-60L1-PB 669 CG1193-PB 1..669 1..669 3451 100 Plus
kat-60L1-PG 673 CG1193-PG 1..673 1..669 3436 99.4 Plus
kat-60L1-PE 673 CG1193-PE 1..673 1..669 3436 99.4 Plus
kat-60L1-PF 605 CG1193-PF 42..605 106..669 2891 100 Plus