Clone Sequence Records
BS12639.3prime Sequence
915 bp (854 high quality bases) assembled on 2006-10-13
> BS12639.3prime
ATGGTCTAGAAAGCTTCTAATCAACCTCCTCAATGGTTGGACCCGAGCCG
CCAGTTGCTCCTGGATTGGAGCCTCCGGCTGTTGGAGGTGGTGCCATTCC
AGCGCCCTGGTACAACCTCGTGATGATCGGACTGCAGATTCTCTCCAGTT
CCTGCTGCTTGTGCTCGAACTCCTGCCGTTCGGCCAGTTGATTGGCATCC
AACCAGGCAATTGTTTCACTGGACCGCTGCTGGATGGTCTCCCGATCCGC
GGGGCTAAAACGGCTGCTCAGATGCTCATCGTCCAGAGTGGAGCGCAGCT
GGAAACAGTACGACTCCAGCTGGTTCTTGGCATTGATGCGGTCGCGTTGC
TGCTCATCCGCTTGGCGATAAGCCTCCGCATCATTGACCATCCGCTCGAT
GTCCTCCTTGGAGAGACGGCCCTTGTCATTGGTGATAGTGATACGGTTCT
CCTTTCCCGTCGACTTCTCCAGTGCCGTCACATTGAGTATTCCATTGGCA
TCGATGTCAAACGTTACCTCCACCTGGGGCACTCCGCGTGGAGCCGGTGG
AATTGCCGAGAGTTCAAACTTACCCAGGCTGTTGTTATCTCGCGTCATCG
CCCGCTCGCCCTCGAACACCTGGATAAGCACACCTGGCTGGTTGTCCGCA
TAAGTGGTAAAGATTTGCGTTTGCTTGGTGGGTATGGTGGTGTTCCTCTT
AATCAGCGTAGTCATCACTCCGCCAGCAGTCTCAATACCCAGAGACAGAG
GAGTGACATCCAGCANGAGCAGATCCTGCACTGCCTCCGATTTATCGCCA
TGGAGGATGGCCGCCTGCACTGCAGCACCATAGGCAACCGCCTCATCGGG
ATTGATGGACTTGTTTAGTCCTTGCCGTTGAAAAGTCCTGCAACAGACGT
TGCACTTTGGGAATC
BS12639.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8937-PC | 1668 | Hsc70-1-RC | 768..1668 | 915..17 | 4356 | 99.4 | Minus |
CG8937-PA | 1926 | Hsc70-1-RA | 1026..1926 | 915..17 | 4356 | 99.4 | Minus |
CG8937-PD | 1668 | Hsc70-1-RD | 768..1668 | 915..17 | 4356 | 99.4 | Minus |
CG4264-PE | 1956 | Hsc70-4-RE | 1510..1559 | 433..384 | 175 | 94 | Minus |
CG4264-PF | 1956 | Hsc70-4-RF | 1510..1559 | 433..384 | 175 | 94 | Minus |
CG4264-PA | 1956 | Hsc70-4-RA | 1510..1559 | 433..384 | 175 | 94 | Minus |
CG4264-PC | 1956 | Hsc70-4-RC | 1510..1559 | 433..384 | 175 | 94 | Minus |
CG4264-PD | 1956 | Hsc70-4-RD | 1510..1559 | 433..384 | 175 | 94 | Minus |
CG4264-PB | 1956 | Hsc70-4-RB | 1510..1559 | 433..384 | 175 | 94 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc70-1-RD | 2543 | CG8937-RD | 1519..2419 | 915..17 | 4414 | 99.4 | Minus |
Hsc70-1-RA | 2168 | CG8937-RA | 1144..2044 | 915..17 | 4414 | 99.4 | Minus |
Hsc70-1-RC | 2611 | CG8937-RC | 1587..2487 | 915..17 | 4414 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13976737..13977637 | 915..17 | 4364 | 99.4 | Minus |
3R | 32079331 | 3R | 15245389..15245954 | 911..348 | 1024 | 79.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:36:23 has no hits.
BS12639.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:50 Download gff for
BS12639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8937-PD | 768..1668 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:31:57 Download gff for
BS12639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-1-RC | 1587..2487 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:48 Download gff for
BS12639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-1-RC | 1587..2487 | 17..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:48 Download gff for
BS12639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13976737..13977637 | 17..915 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:31:57 Download gff for
BS12639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13969837..13970737 | 17..915 | 99 | | Minus |
BS12639.5prime Sequence
858 bp (788 high quality bases) assembled on 2006-10-13
> BS12639.5prime
GAAGTTATCAGTCGACATGAAGCATTGGCCCTTCGAGGTGTTCGCCGAGA
ACGGAAAGCCACGCATCCGTGTGGAGTACAAGGGCGAACGGAAGAGCTTC
TATCCGGAGGAGGTGTCCTCGATGGTGCTGACGAAAATGCGAGAGACCGC
GGAGGCCTACCTGGGCGGCACGGTGACAGATGCGGTTGTCACCGTTCCGG
CGTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCGGGTGCCATT
GCAGGATTGAATGTCCTTCGCATTATCAACGAACCAACGGCGGCGGCCAT
AGCCTACGGCTTGGATAAGCAGGGCACCAGCGAACGAAATGTCTTGATCT
TCGACCTTGGTGGTGGCACCTTCGACGTTTCTGTGCTGACCATCGAGGAT
GGCATCTTCGAGGTGAAGGCAACCGCTGGCGACACCCATCTCGGCGGCGA
GGACTTCGATAACCGGCTGGTGAACCACTTCGTACAGGAGTTTCAGCGCA
AACATAAGAAGGATCTGGGCCAGAACAAGCGGGCTTTGAGGCGACTCCGA
ACCGCGTGTGAAAGGGCAAAACGCACCCTCTCCTCATCCACGCAGGCCAG
CATCGAGATCGATTCCCTCTTTGAGGGCGTCGACTTCTACACCTCGGTGA
CACGGGCCCGCTTCGAAGAGTTGAATGGCGATCTGTTCCGAGGTACCATG
GAACCAGTGGCCAAGGCGCTGCGTGATGCCAAGATGGACAAGGGCCAGAT
ACACGACATCGTCCTTGTGGGTGGCTCCACCAGGATTCCCAAAGTGCAAC
GTCTGCTGCAGGACTTTTTCAACGGCAAGGAACTAAACAAGTCCATCAAT
CCCGATGA
BS12639.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:27:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8937-PA | 1926 | Hsc70-1-RA | 256..1100 | 14..858 | 4200 | 99.8 | Plus |
CG8937-PC | 1668 | Hsc70-1-RC | 1..842 | 17..858 | 4185 | 99.8 | Plus |
CG8937-PD | 1668 | Hsc70-1-RD | 1..842 | 17..858 | 4185 | 99.8 | Plus |
CG5436-PA | 1908 | Hsp68-RA | 430..482 | 197..249 | 165 | 92.4 | Plus |
CG8542-PA | 2061 | Hsc70-5-RA | 586..623 | 203..240 | 165 | 97.3 | Plus |
CG6489-PA | 1926 | Hsp70Bc-RA | 961..998 | 725..762 | 140 | 94.7 | Plus |
CG5834-PA | 1926 | Hsp70Bbb-RA | 961..998 | 725..762 | 140 | 94.7 | Plus |
CG31359-PA | 1926 | Hsp70Bb-RA | 961..998 | 725..762 | 140 | 94.7 | Plus |
CG31449-PA | 1926 | Hsp70Ba-RA | 961..998 | 725..762 | 140 | 94.7 | Plus |
CG18743-PA | 1929 | Hsp70Ab-RA | 436..467 | 203..234 | 135 | 96.8 | Plus |
CG31366-PA | 1929 | Hsp70Aa-RA | 436..467 | 203..234 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc70-1-RD | 2543 | CG8937-RD | 743..1593 | 9..858 | 4215 | 99.8 | Plus |
Hsc70-1-RA | 2168 | CG8937-RA | 368..1218 | 9..858 | 4215 | 99.8 | Plus |
Hsc70-1-RC | 2611 | CG8937-RC | 811..1661 | 9..858 | 4215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13975967..13976811 | 14..858 | 4210 | 99.9 | Plus |
3R | 32079331 | 3R | 15244615..15245459 | 14..858 | 1240 | 76.4 | Plus |
3R | 32079331 | 3R | 11955205..11956043 | 849..14 | 755 | 72.9 | Minus |
3R | 32079331 | 3R | 11959035..11959873 | 14..849 | 755 | 72.9 | Plus |
3R | 32079331 | 3R | 12506281..12507119 | 14..849 | 755 | 72.9 | Plus |
3R | 32079331 | 3R | 12509564..12510402 | 14..849 | 755 | 72.9 | Plus |
3R | 32079331 | 3R | 12466494..12467311 | 828..14 | 740 | 73 | Minus |
3R | 32079331 | 3R | 12502998..12503836 | 14..849 | 740 | 72.8 | Plus |
3R | 32079331 | 3R | 24056017..24056858 | 852..14 | 605 | 71.7 | Minus |
3R | 32079331 | 3R | 13045666..13046126 | 14..471 | 590 | 75.7 | Plus |
X | 23542271 | X | 11803941..11804118 | 323..146 | 275 | 77 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:45:45 has no hits.
BS12639.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:51 Download gff for
BS12639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8937-PA | 250..1099 | 9..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:34:55 Download gff for
BS12639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-1-RC | 811..1660 | 9..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:16:15 Download gff for
BS12639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-1-RC | 811..1660 | 9..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:16:15 Download gff for
BS12639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13975961..13976810 | 9..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:34:55 Download gff for
BS12639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13969061..13969910 | 9..857 | 99 | | Plus |
BS12639.complete Sequence
1700 bp assembled on 2007-10-26
> BS12639.complete
GAAGTTATCAGTCGACATGAAGCATTGGCCCTTCGAGGTGTTCGCCGAGA
ACGGAAAGCCACGCATCCGTGTGGAGTACAAGGGCGAACGGAAGAGCTTC
TATCCGGAGGAGGTGTCCTCGATGGTGCTGACGAAAATGCGAGAGACCGC
GGAGGCCTACCTGGGCGGCACGGTGACAGATGCGGTTGTCACCGTTCCGG
CGTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCGGGTGCCATT
GCAGGATTGAATGTCCTTCGCATTATCAACGAACCAACGGCGGCGGCCAT
AGCCTACGGCTTGGATAAGCAGGGCACCAGCGAACGAAATGTCTTGATCT
TCGACCTTGGTGGTGGCACCTTCGACGTTTCTGTGCTGACCATCGAGGAT
GGCATCTTCGAGGTGAAGGCAACCGCTGGCGACACCCATCTCGGCGGCGA
GGACTTCGATAACCGGCTGGTGAACCACTTCGTACAGGAGTTTCAGCGCA
AACATAAGAAGGATCTGGGCCAGAACAAGCGGGCTTTGAGGCGACTCCGA
ACCGCGTGTGAAAGGGCAAAACGCACCCTCTCCTCATCCACGCAGGCCAG
CATCGAGATCGATTCCCTCTTTGAGGGCGTCGACTTCTACACCTCGGTGA
CACGGGCCCGCTTCGAAGAGTTGAATGGCGATCTGTTCCGAGGTACCATG
GAACCAGTGGCCAAGGCGCTGCGTGATGCCAAGATGGACAAGGGCCAGAT
ACACGACATCGTCCTTGTGGGTGGCTCCACCAGGATTCCCAAAGTGCAAC
GTCTGCTGCAGGACTTTTTCAACGGCAAGGAACTAAACAAGTCCATCAAT
CCCGATGAGGCGGTTGCCTATGGTGCTGCAGTGCAGGCGGCCATCCTCCA
TGGCGATAAATCGGAGGCAGTGCAGGATCTGCTCCTGCTGGATGTCACTC
CTCTGTCTCTGGGTATTGAGACTGCTGGCGGAGTGATGACTACGCTGATT
AAGAGGAACACCACCATACCCACCAAGCAAACGCAAATCTTTACCACTTA
TGCGGACAACCAGCCAGGTGTGCTTATCCAGGTGTTCGAGGGCGAGCGGG
CGATGACGCGAGATAACAACAGCCTGGGTAAGTTTGAACTCTCGGCAATT
CCACCGGCTCCACGCGGAGTGCCCCAGGTGGAGGTAACGTTTGACATCGA
TGCCAATGGAATACTCAATGTGACGGCACTGGAGAAGTCGACGGGAAAGG
AGAACCGTATCACTATCACCAATGACAAGGGCCGTCTCTCCAAGGAGGAC
ATCGAGCGGATGGTCAATGATGCGGAGGCTTATCGCCAAGCGGATGAGCA
GCAACGCGACCGCATCAATGCCAAGAACCAGCTGGAGTCGTACTGTTTCC
AGCTGCGCTCCACTCTGGACGATGAGCATCTGAGCAGCCGTTTTAGCCCC
GCGGATCGGGAGACCATCCAGCAGCGGTCCAGTGAAACAATTGCCTGGTT
GGATGCCAATCAACTGGCCGAACGGCAGGAGTTCGAGCACAAGCAGCAGG
AACTGGAGAGAATCTGCAGTCCGATCATCACGAGGTTGTACCAGGGCGCT
GGAATGGCACCACCTCCAACAGCCGGAGGCTCCAATCCAGGAGCAACTGG
CGGCTCGGGTCCAACCATTGAGGAGGTTGATTAGAAGCTTTCTAGACCAT
BS12639.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc70-1-RA | 1926 | CG8937-PA | 256..1926 | 14..1684 | 8325 | 99.9 | Plus |
Hsc70-1-RD | 1668 | CG8937-PD | 1..1668 | 17..1684 | 8310 | 99.9 | Plus |
Hsc70-1-RC | 1668 | CG8937-PC | 1..1668 | 17..1684 | 8310 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc70-1-RD | 2543 | CG8937-RD | 749..2419 | 14..1684 | 8325 | 99.9 | Plus |
Hsc70-1-RA | 2168 | CG8937-RA | 374..2044 | 14..1684 | 8325 | 99.9 | Plus |
Hsc70-1-RC | 2611 | CG8937-RC | 817..2487 | 14..1684 | 8325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13975967..13977637 | 14..1684 | 8325 | 99.9 | Plus |
3R | 32079331 | 3R | 15244615..15245954 | 14..1353 | 2140 | 77.3 | Plus |
3R | 32079331 | 3R | 11954842..11956043 | 1212..14 | 905 | 71.9 | Minus |
3R | 32079331 | 3R | 11959035..11960236 | 14..1212 | 905 | 71.9 | Plus |
3R | 32079331 | 3R | 12506281..12507597 | 14..1327 | 895 | 71.4 | Plus |
3R | 32079331 | 3R | 12509564..12510880 | 14..1327 | 895 | 71.4 | Plus |
3R | 32079331 | 3R | 12465995..12467311 | 1327..14 | 880 | 71.3 | Minus |
3R | 32079331 | 3R | 12502998..12504314 | 14..1327 | 880 | 71.3 | Plus |
3R | 32079331 | 3R | 24055542..24056858 | 1327..14 | 715 | 70.5 | Minus |
3R | 32079331 | 3R | 13045666..13046878 | 14..1223 | 615 | 70.2 | Plus |
X | 23542271 | X | 11803941..11804118 | 323..146 | 275 | 77 | Minus |
2R | 25286936 | 2R | 14254880..14254974 | 282..188 | 220 | 82.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:15:23 has no hits.
BS12639.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:17 Download gff for
BS12639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-1-RA | 250..1926 | 9..1684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:46:13 Download gff for
BS12639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-1-RD | 93..1769 | 9..1684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:05 Download gff for
BS12639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-1-RC | 820..2487 | 17..1684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:42 Download gff for
BS12639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-1-RD | 102..1769 | 17..1684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:48 Download gff for
BS12639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-1-RC | 820..2487 | 17..1684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:48 Download gff for
BS12639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13975970..13977637 | 17..1684 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:05 Download gff for
BS12639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13969070..13970737 | 17..1684 | 99 | | Plus |
BS12639.pep Sequence
Translation from 16 to 1683
> BS12639.pep
MKHWPFEVFAENGKPRIRVEYKGERKSFYPEEVSSMVLTKMRETAEAYLG
GTVTDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLD
KQGTSERNVLIFDLGGGTFDVSVLTIEDGIFEVKATAGDTHLGGEDFDNR
LVNHFVQEFQRKHKKDLGQNKRALRRLRTACERAKRTLSSSTQASIEIDS
LFEGVDFYTSVTRARFEELNGDLFRGTMEPVAKALRDAKMDKGQIHDIVL
VGGSTRIPKVQRLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSE
AVQDLLLLDVTPLSLGIETAGGVMTTLIKRNTTIPTKQTQIFTTYADNQP
GVLIQVFEGERAMTRDNNSLGKFELSAIPPAPRGVPQVEVTFDIDANGIL
NVTALEKSTGKENRITITNDKGRLSKEDIERMVNDAEAYRQADEQQRDRI
NAKNQLESYCFQLRSTLDDEHLSSRFSPADRETIQQRSSETIAWLDANQL
AERQEFEHKQQELERICSPIITRLYQGAGMAPPPTAGGSNPGATGGSGPT
IEEVD*
BS12639.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc70-1-PD | 555 | CG8937-PD | 1..555 | 1..555 | 2826 | 100 | Plus |
Hsc70-1-PA | 641 | CG8937-PA | 87..641 | 1..555 | 2826 | 100 | Plus |
Hsc70-1-PC | 555 | CG8937-PC | 1..555 | 1..555 | 2826 | 100 | Plus |
Hsc70-4-PG | 651 | CG4264-PG | 87..651 | 1..555 | 2339 | 79.6 | Plus |
Hsc70-4-PB | 651 | CG4264-PB | 87..651 | 1..555 | 2339 | 79.6 | Plus |