Clone BS12639 Report

Search the DGRC for BS12639

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptHsc70-1-RC
Protein status:BS12639.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12639.3prime Sequence

915 bp (854 high quality bases) assembled on 2006-10-13

> BS12639.3prime
ATGGTCTAGAAAGCTTCTAATCAACCTCCTCAATGGTTGGACCCGAGCCG
CCAGTTGCTCCTGGATTGGAGCCTCCGGCTGTTGGAGGTGGTGCCATTCC
AGCGCCCTGGTACAACCTCGTGATGATCGGACTGCAGATTCTCTCCAGTT
CCTGCTGCTTGTGCTCGAACTCCTGCCGTTCGGCCAGTTGATTGGCATCC
AACCAGGCAATTGTTTCACTGGACCGCTGCTGGATGGTCTCCCGATCCGC
GGGGCTAAAACGGCTGCTCAGATGCTCATCGTCCAGAGTGGAGCGCAGCT
GGAAACAGTACGACTCCAGCTGGTTCTTGGCATTGATGCGGTCGCGTTGC
TGCTCATCCGCTTGGCGATAAGCCTCCGCATCATTGACCATCCGCTCGAT
GTCCTCCTTGGAGAGACGGCCCTTGTCATTGGTGATAGTGATACGGTTCT
CCTTTCCCGTCGACTTCTCCAGTGCCGTCACATTGAGTATTCCATTGGCA
TCGATGTCAAACGTTACCTCCACCTGGGGCACTCCGCGTGGAGCCGGTGG
AATTGCCGAGAGTTCAAACTTACCCAGGCTGTTGTTATCTCGCGTCATCG
CCCGCTCGCCCTCGAACACCTGGATAAGCACACCTGGCTGGTTGTCCGCA
TAAGTGGTAAAGATTTGCGTTTGCTTGGTGGGTATGGTGGTGTTCCTCTT
AATCAGCGTAGTCATCACTCCGCCAGCAGTCTCAATACCCAGAGACAGAG
GAGTGACATCCAGCANGAGCAGATCCTGCACTGCCTCCGATTTATCGCCA
TGGAGGATGGCCGCCTGCACTGCAGCACCATAGGCAACCGCCTCATCGGG
ATTGATGGACTTGTTTAGTCCTTGCCGTTGAAAAGTCCTGCAACAGACGT
TGCACTTTGGGAATC

BS12639.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8937-PC 1668 Hsc70-1-RC 768..1668 915..17 4356 99.4 Minus
CG8937-PA 1926 Hsc70-1-RA 1026..1926 915..17 4356 99.4 Minus
CG8937-PD 1668 Hsc70-1-RD 768..1668 915..17 4356 99.4 Minus
CG4264-PE 1956 Hsc70-4-RE 1510..1559 433..384 175 94 Minus
CG4264-PF 1956 Hsc70-4-RF 1510..1559 433..384 175 94 Minus
CG4264-PA 1956 Hsc70-4-RA 1510..1559 433..384 175 94 Minus
CG4264-PC 1956 Hsc70-4-RC 1510..1559 433..384 175 94 Minus
CG4264-PD 1956 Hsc70-4-RD 1510..1559 433..384 175 94 Minus
CG4264-PB 1956 Hsc70-4-RB 1510..1559 433..384 175 94 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-1-RD 2543 CG8937-RD 1519..2419 915..17 4414 99.4 Minus
Hsc70-1-RA 2168 CG8937-RA 1144..2044 915..17 4414 99.4 Minus
Hsc70-1-RC 2611 CG8937-RC 1587..2487 915..17 4414 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13976737..13977637 915..17 4364 99.4 Minus
3R 32079331 3R 15245389..15245954 911..348 1024 79.5 Minus
Blast to na_te.dros performed on 2015-02-10 17:36:23 has no hits.

BS12639.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:50 Download gff for BS12639.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8937-PD 768..1668 17..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:31:57 Download gff for BS12639.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RC 1587..2487 17..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:48 Download gff for BS12639.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RC 1587..2487 17..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:48 Download gff for BS12639.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13976737..13977637 17..915 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:31:57 Download gff for BS12639.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13969837..13970737 17..915 99   Minus

BS12639.5prime Sequence

858 bp (788 high quality bases) assembled on 2006-10-13

> BS12639.5prime
GAAGTTATCAGTCGACATGAAGCATTGGCCCTTCGAGGTGTTCGCCGAGA
ACGGAAAGCCACGCATCCGTGTGGAGTACAAGGGCGAACGGAAGAGCTTC
TATCCGGAGGAGGTGTCCTCGATGGTGCTGACGAAAATGCGAGAGACCGC
GGAGGCCTACCTGGGCGGCACGGTGACAGATGCGGTTGTCACCGTTCCGG
CGTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCGGGTGCCATT
GCAGGATTGAATGTCCTTCGCATTATCAACGAACCAACGGCGGCGGCCAT
AGCCTACGGCTTGGATAAGCAGGGCACCAGCGAACGAAATGTCTTGATCT
TCGACCTTGGTGGTGGCACCTTCGACGTTTCTGTGCTGACCATCGAGGAT
GGCATCTTCGAGGTGAAGGCAACCGCTGGCGACACCCATCTCGGCGGCGA
GGACTTCGATAACCGGCTGGTGAACCACTTCGTACAGGAGTTTCAGCGCA
AACATAAGAAGGATCTGGGCCAGAACAAGCGGGCTTTGAGGCGACTCCGA
ACCGCGTGTGAAAGGGCAAAACGCACCCTCTCCTCATCCACGCAGGCCAG
CATCGAGATCGATTCCCTCTTTGAGGGCGTCGACTTCTACACCTCGGTGA
CACGGGCCCGCTTCGAAGAGTTGAATGGCGATCTGTTCCGAGGTACCATG
GAACCAGTGGCCAAGGCGCTGCGTGATGCCAAGATGGACAAGGGCCAGAT
ACACGACATCGTCCTTGTGGGTGGCTCCACCAGGATTCCCAAAGTGCAAC
GTCTGCTGCAGGACTTTTTCAACGGCAAGGAACTAAACAAGTCCATCAAT
CCCGATGA

BS12639.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8937-PA 1926 Hsc70-1-RA 256..1100 14..858 4200 99.8 Plus
CG8937-PC 1668 Hsc70-1-RC 1..842 17..858 4185 99.8 Plus
CG8937-PD 1668 Hsc70-1-RD 1..842 17..858 4185 99.8 Plus
CG5436-PA 1908 Hsp68-RA 430..482 197..249 165 92.4 Plus
CG8542-PA 2061 Hsc70-5-RA 586..623 203..240 165 97.3 Plus
CG6489-PA 1926 Hsp70Bc-RA 961..998 725..762 140 94.7 Plus
CG5834-PA 1926 Hsp70Bbb-RA 961..998 725..762 140 94.7 Plus
CG31359-PA 1926 Hsp70Bb-RA 961..998 725..762 140 94.7 Plus
CG31449-PA 1926 Hsp70Ba-RA 961..998 725..762 140 94.7 Plus
CG18743-PA 1929 Hsp70Ab-RA 436..467 203..234 135 96.8 Plus
CG31366-PA 1929 Hsp70Aa-RA 436..467 203..234 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-1-RD 2543 CG8937-RD 743..1593 9..858 4215 99.8 Plus
Hsc70-1-RA 2168 CG8937-RA 368..1218 9..858 4215 99.8 Plus
Hsc70-1-RC 2611 CG8937-RC 811..1661 9..858 4215 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13975967..13976811 14..858 4210 99.9 Plus
3R 32079331 3R 15244615..15245459 14..858 1240 76.4 Plus
3R 32079331 3R 11955205..11956043 849..14 755 72.9 Minus
3R 32079331 3R 11959035..11959873 14..849 755 72.9 Plus
3R 32079331 3R 12506281..12507119 14..849 755 72.9 Plus
3R 32079331 3R 12509564..12510402 14..849 755 72.9 Plus
3R 32079331 3R 12466494..12467311 828..14 740 73 Minus
3R 32079331 3R 12502998..12503836 14..849 740 72.8 Plus
3R 32079331 3R 24056017..24056858 852..14 605 71.7 Minus
3R 32079331 3R 13045666..13046126 14..471 590 75.7 Plus
X 23542271 X 11803941..11804118 323..146 275 77 Minus
Blast to na_te.dros performed on 2015-02-13 06:45:45 has no hits.

BS12639.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:51 Download gff for BS12639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8937-PA 250..1099 9..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:34:55 Download gff for BS12639.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RC 811..1660 9..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:16:15 Download gff for BS12639.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RC 811..1660 9..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:16:15 Download gff for BS12639.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13975961..13976810 9..857 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:34:55 Download gff for BS12639.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13969061..13969910 9..857 99   Plus

BS12639.complete Sequence

1700 bp assembled on 2007-10-26

> BS12639.complete
GAAGTTATCAGTCGACATGAAGCATTGGCCCTTCGAGGTGTTCGCCGAGA
ACGGAAAGCCACGCATCCGTGTGGAGTACAAGGGCGAACGGAAGAGCTTC
TATCCGGAGGAGGTGTCCTCGATGGTGCTGACGAAAATGCGAGAGACCGC
GGAGGCCTACCTGGGCGGCACGGTGACAGATGCGGTTGTCACCGTTCCGG
CGTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCGGGTGCCATT
GCAGGATTGAATGTCCTTCGCATTATCAACGAACCAACGGCGGCGGCCAT
AGCCTACGGCTTGGATAAGCAGGGCACCAGCGAACGAAATGTCTTGATCT
TCGACCTTGGTGGTGGCACCTTCGACGTTTCTGTGCTGACCATCGAGGAT
GGCATCTTCGAGGTGAAGGCAACCGCTGGCGACACCCATCTCGGCGGCGA
GGACTTCGATAACCGGCTGGTGAACCACTTCGTACAGGAGTTTCAGCGCA
AACATAAGAAGGATCTGGGCCAGAACAAGCGGGCTTTGAGGCGACTCCGA
ACCGCGTGTGAAAGGGCAAAACGCACCCTCTCCTCATCCACGCAGGCCAG
CATCGAGATCGATTCCCTCTTTGAGGGCGTCGACTTCTACACCTCGGTGA
CACGGGCCCGCTTCGAAGAGTTGAATGGCGATCTGTTCCGAGGTACCATG
GAACCAGTGGCCAAGGCGCTGCGTGATGCCAAGATGGACAAGGGCCAGAT
ACACGACATCGTCCTTGTGGGTGGCTCCACCAGGATTCCCAAAGTGCAAC
GTCTGCTGCAGGACTTTTTCAACGGCAAGGAACTAAACAAGTCCATCAAT
CCCGATGAGGCGGTTGCCTATGGTGCTGCAGTGCAGGCGGCCATCCTCCA
TGGCGATAAATCGGAGGCAGTGCAGGATCTGCTCCTGCTGGATGTCACTC
CTCTGTCTCTGGGTATTGAGACTGCTGGCGGAGTGATGACTACGCTGATT
AAGAGGAACACCACCATACCCACCAAGCAAACGCAAATCTTTACCACTTA
TGCGGACAACCAGCCAGGTGTGCTTATCCAGGTGTTCGAGGGCGAGCGGG
CGATGACGCGAGATAACAACAGCCTGGGTAAGTTTGAACTCTCGGCAATT
CCACCGGCTCCACGCGGAGTGCCCCAGGTGGAGGTAACGTTTGACATCGA
TGCCAATGGAATACTCAATGTGACGGCACTGGAGAAGTCGACGGGAAAGG
AGAACCGTATCACTATCACCAATGACAAGGGCCGTCTCTCCAAGGAGGAC
ATCGAGCGGATGGTCAATGATGCGGAGGCTTATCGCCAAGCGGATGAGCA
GCAACGCGACCGCATCAATGCCAAGAACCAGCTGGAGTCGTACTGTTTCC
AGCTGCGCTCCACTCTGGACGATGAGCATCTGAGCAGCCGTTTTAGCCCC
GCGGATCGGGAGACCATCCAGCAGCGGTCCAGTGAAACAATTGCCTGGTT
GGATGCCAATCAACTGGCCGAACGGCAGGAGTTCGAGCACAAGCAGCAGG
AACTGGAGAGAATCTGCAGTCCGATCATCACGAGGTTGTACCAGGGCGCT
GGAATGGCACCACCTCCAACAGCCGGAGGCTCCAATCCAGGAGCAACTGG
CGGCTCGGGTCCAACCATTGAGGAGGTTGATTAGAAGCTTTCTAGACCAT

BS12639.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-1-RA 1926 CG8937-PA 256..1926 14..1684 8325 99.9 Plus
Hsc70-1-RD 1668 CG8937-PD 1..1668 17..1684 8310 99.9 Plus
Hsc70-1-RC 1668 CG8937-PC 1..1668 17..1684 8310 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-1-RD 2543 CG8937-RD 749..2419 14..1684 8325 99.9 Plus
Hsc70-1-RA 2168 CG8937-RA 374..2044 14..1684 8325 99.9 Plus
Hsc70-1-RC 2611 CG8937-RC 817..2487 14..1684 8325 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13975967..13977637 14..1684 8325 99.9 Plus
3R 32079331 3R 15244615..15245954 14..1353 2140 77.3 Plus
3R 32079331 3R 11954842..11956043 1212..14 905 71.9 Minus
3R 32079331 3R 11959035..11960236 14..1212 905 71.9 Plus
3R 32079331 3R 12506281..12507597 14..1327 895 71.4 Plus
3R 32079331 3R 12509564..12510880 14..1327 895 71.4 Plus
3R 32079331 3R 12465995..12467311 1327..14 880 71.3 Minus
3R 32079331 3R 12502998..12504314 14..1327 880 71.3 Plus
3R 32079331 3R 24055542..24056858 1327..14 715 70.5 Minus
3R 32079331 3R 13045666..13046878 14..1223 615 70.2 Plus
X 23542271 X 11803941..11804118 323..146 275 77 Minus
2R 25286936 2R 14254880..14254974 282..188 220 82.1 Minus
Blast to na_te.dros performed on 2014-11-27 07:15:23 has no hits.

BS12639.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:17 Download gff for BS12639.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RA 250..1926 9..1684 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:46:13 Download gff for BS12639.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RD 93..1769 9..1684 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:05 Download gff for BS12639.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RC 820..2487 17..1684 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:42 Download gff for BS12639.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RD 102..1769 17..1684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:48 Download gff for BS12639.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RC 820..2487 17..1684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:48 Download gff for BS12639.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13975970..13977637 17..1684 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:05 Download gff for BS12639.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13969070..13970737 17..1684 99   Plus

BS12639.pep Sequence

Translation from 16 to 1683

> BS12639.pep
MKHWPFEVFAENGKPRIRVEYKGERKSFYPEEVSSMVLTKMRETAEAYLG
GTVTDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLD
KQGTSERNVLIFDLGGGTFDVSVLTIEDGIFEVKATAGDTHLGGEDFDNR
LVNHFVQEFQRKHKKDLGQNKRALRRLRTACERAKRTLSSSTQASIEIDS
LFEGVDFYTSVTRARFEELNGDLFRGTMEPVAKALRDAKMDKGQIHDIVL
VGGSTRIPKVQRLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSE
AVQDLLLLDVTPLSLGIETAGGVMTTLIKRNTTIPTKQTQIFTTYADNQP
GVLIQVFEGERAMTRDNNSLGKFELSAIPPAPRGVPQVEVTFDIDANGIL
NVTALEKSTGKENRITITNDKGRLSKEDIERMVNDAEAYRQADEQQRDRI
NAKNQLESYCFQLRSTLDDEHLSSRFSPADRETIQQRSSETIAWLDANQL
AERQEFEHKQQELERICSPIITRLYQGAGMAPPPTAGGSNPGATGGSGPT
IEEVD*

BS12639.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-1-PD 555 CG8937-PD 1..555 1..555 2826 100 Plus
Hsc70-1-PA 641 CG8937-PA 87..641 1..555 2826 100 Plus
Hsc70-1-PC 555 CG8937-PC 1..555 1..555 2826 100 Plus
Hsc70-4-PG 651 CG4264-PG 87..651 1..555 2339 79.6 Plus
Hsc70-4-PB 651 CG4264-PB 87..651 1..555 2339 79.6 Plus