Clone BS12642 Report

Search the DGRC for BS12642

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG6664-RA
Protein status:BS12642.pep: full length peptide match
Sequenced Size:1748

Clone Sequence Records

BS12642.3prime Sequence

671 bp (669 high quality bases) assembled on 2006-10-13

> BS12642.3prime
ATGGTCTAGAAAGCTTCTAGTCCTTGCAGGTGGACGTGTCCATTGGACTG
GCTGGCTGGATAAAGGCCGTGGCCGCCGAGCTGGGCGGATTGGTTGGCGT
AAACGCCGACAGTGAGGAGTTGCTGCTGCTGTTAACAAGATTGCCGCTGG
ACGAGTTGTTCAGGCTGATGTTCATCAAATTGGACGACGACGACGAAGCG
CTGGAGTGGCTAGTGAGCTGGGCCAGCAGACCTCCACCTCCACCGCCGGC
CAAGAAGGTGGCACTGCCGCCAGCCGAATTTGACGAGCCAAGGCTTAGGC
GTTCGCCTCCCAGATTCGAGAGAAAGCCGCCAGCGGCATTCCCAGCTGAC
ACGGACGCAGACGATGAGGAGCTGCCGGTTCCCAAAATGCCCAGCAGTGG
GTTGGTTGAGGTCAGCACGTTCGGTGCGGAAGTGTTCAGGCCCAGCATGG
GCGTTGGGAGTGCTGGCTTGATGAAGCGTTCGCTGGCACGACGATTCACT
AGCTGGCCGCAGGCATAGCAGCGGTTTTGCACCGCCGTGCCCGGACTTAG
AGGTCGGCTACTCGAGGGACTGTGGGAGACGGGACTGCTGATGGTGCGTT
GACGTTGGGCGCTCACCGCTGAAGCTGCGGCGGCGGCTGCTGCCGTCGCT
ACAGCGAACGAACCGCCTCCC

BS12642.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6664-PA 1599 CG6664-RA 945..1599 671..17 3175 99.3 Minus
CG6664-PB 1599 CG6664-RB 945..1599 671..17 3175 99.3 Minus
CG6664-PC 1599 CG6664-RC 945..1599 671..17 3175 99.3 Minus
CG6664-PD 1716 CG6664-RD 1062..1716 671..17 3175 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6664-RC 2603 CG6664-RC 1385..2039 671..17 3215 99.4 Minus
CG6664-RB 2552 CG6664-RB 1334..1988 671..17 3215 99.4 Minus
CG6664-RA 2482 CG6664-RA 1264..1918 671..17 3215 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17013450..17013930 17..497 2345 99.2 Plus
3L 28110227 3L 17013993..17014167 497..671 875 100 Plus
Blast to na_te.dros performed 2015-02-13 00:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2804..2961 171..20 126 57 Minus

BS12642.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:52 Download gff for BS12642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6664-PD 1062..1716 17..671 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:45:07 Download gff for BS12642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6664-RB 1334..1991 14..671 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:51 Download gff for BS12642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 1264..1921 14..671 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:51 Download gff for BS12642.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17013447..17013929 14..496 98 <- Plus
3L 17013993..17014167 497..671 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:45:07 Download gff for BS12642.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17006547..17007029 14..496 98 <- Plus
arm_3L 17007093..17007267 497..671 100   Plus

BS12642.5prime Sequence

873 bp (796 high quality bases) assembled on 2006-10-13

> BS12642.5prime
GAAGTTATCAGTCGACATGTATAATATATATGTGCTTAAAAAGCGACTGG
CATACATTATTTCTCGTCATACATATATGTATATGCTCAAAAAACGTAAT
GGCAATGGGCCATTTACCTTTAGTTTTGCAGGCATGGAAAGTCCCTGTGA
ATCCGAAAGTTCGCTGGACGGCGGCACCATGCTGCCACCAAGCCCAGTTT
CCCGGGAGCAGCTCCAGAAGAGGATCGAATCGCTTACCCAGCAGAACAAG
GTGCTGAAAGCCGAACTGGATACCTTCAAGACCAAGTGCAAAGTGGTGCA
AGAGGAGAATCGCTGCCTCAAGCAAGCCTCAGTCATCATTCAAGCCAAAG
CCGAGCAGGAGGAAGAATACATCTCAAACACGCTGCTAAAAAAGATTCAG
GCCCTCAAAAAGGAGAAGGAGACTCTGGCGCACCACTACGAGCGCGAGGA
GGAGTGTCTGACCAACGATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGG
AGAAGTGCAAGCTGGAGCAGACACTTGAGCAGGAGCAGGAGTGCCTCGTC
AACAAGCTTATGCGCAAGATTGAGAAGCTCCAGGCGGAGACGGACAACAA
GCAGACCAATCTCGAGCAGCTGCGCCGCGAAATGGTCGAGTTGGAGAACA
CGCTTGAGCAGGAACAGGAAGCTCTTGTAAACAAGCTGTGGAAGCGCATG
GACAAGCTGGAGACCGAGAAGCGTTCGCTGCAAATCAAGCTGGATCAGCC
GGTTTCCGATCCGACTACGCCGCGAGACATCACAAACAACGCCCATGCCA
ATGGTGGCGATACGGCCACCAGTTTGAGTGCTCATATCCAGATTCTGCGC
TCCGAAGTGCTTCGCTATCGCTC

BS12642.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6664-PD 1716 CG6664-RD 1..857 17..873 4185 99.5 Plus
CG6664-PA 1599 CG6664-RA 1..740 134..873 3625 99.5 Plus
CG6664-PB 1599 CG6664-RB 1..740 134..873 3625 99.5 Plus
CG6664-PC 1599 CG6664-RC 1..740 134..873 3625 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6664-RA 2482 CG6664-RA 308..1059 122..873 3715 99.6 Plus
CG6664-RB 2552 CG6664-RB 380..1129 124..873 3705 99.6 Plus
CG6664-RC 2603 CG6664-RC 436..1180 129..873 3680 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17014372..17014904 873..341 2665 100 Minus
3L 28110227 3L 17015140..17015373 250..17 1110 98.3 Minus
3L 28110227 3L 17014987..17015077 340..250 455 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:48:44 has no hits.

BS12642.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:52 Download gff for BS12642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6664-PD 1..857 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:45:09 Download gff for BS12642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 306..1059 117..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:56 Download gff for BS12642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 306..1059 117..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:56 Download gff for BS12642.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17014372..17014904 341..873 100 <- Minus
3L 17014987..17015077 250..340 100 <- Minus
3L 17015141..17015378 9..249 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:45:09 Download gff for BS12642.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17007472..17008004 341..873 100 <- Minus
arm_3L 17008087..17008177 250..340 100 <- Minus
arm_3L 17008241..17008478 9..249 96   Minus

BS12642.complete Sequence

1748 bp assembled on 2009-08-24

GenBank Submission: KX801856

> BS12642.complete
GAAGTTATCAGTCGACATGTATAATATATATGTGCTTAAAAAGCGACTGG
CATACATTATTTCTCGTCATACATATATGTATATGCTCAAAAAACGTAAT
GGCAATGGGCCATTTACCTTTAGTTTTGCAGGCATGGAAAGTCCCTGTGA
ATCCGAAAGTTCGCTGGACGGCGGCACCATGCTGCCACCAAGCCCAGTTT
CCCGGGAGCAGCTCCAGAAGAGGATCGAATCGCTTACCCAGCAGAACAAG
GTGCTGAAAGCCGAACTGGATACCTTCAAGACCAAGTGCAAAGTGGTGCA
AGAGGAGAATCGCTGCCTCAAGCAAGCCTCAGTCATCATTCAAGCCAAAG
CCGAGCAGGAGGAAGAATACATCTCAAACACGCTGCTAAAAAAGATTCAG
GCCCTCAAAAAGGAGAAGGAGACTCTGGCGCACCACTACGAGCGCGAGGA
GGAGTGTCTGACCAACGATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGG
AGAAGTGCAAGCTGGAGCAGACACTTGAGCAGGAGCAGGAGTGCCTCGTC
AACAAGCTTATGCGCAAGATTGAGAAGCTCCAGGCGGAGACGGACAACAA
GCAGACCAATCTCGAGCAGCTGCGCCGCGAAATGGTCGAGTTGGAGAACA
CGCTTGAGCAGGAACAGGAAGCTCTTGTAAACAAGCTGTGGAAGCGCATG
GACAAGCTGGAGACCGAGAAGCGTTCGCTGCAAATCAAGCTGGATCAGCC
GGTTTCCGATCCGACTACGCCGCGAGACATCACAAACAACGCCCATGCCA
ATGGTGGCGATACGGCCACCAGTTTGAGTGCTCATATCCAGATTCTGCGC
TCCGAAGTGCTTCGCTATCGCTCCGACCTGGCGAGCGCTCAGAAGGAAGC
CACTATCAAAACACAGCAGTATGCGCAGGAAGAGAAGTCGATTCGCGAGG
AAAACGCTCGCCTTCAGCGCAAGCTAAAGCAGGAGGTGGAGCGCCGCGAA
GCCCTATGCCGGCACCTCTCCGAATCGGAATCCTCGCTGGAGATGGACGA
GGAACGCTTCTACAACGAGAACCTGATGGGAGGCGGTTCGTTCGCTGTAG
CGACGGCAGCAGCCGCCGCCGCAGCTTCAGCGGTGAGCGCCCAACGTCAA
CGCACCATCAGCAGTCCCGTCTCCCACAGTCCCTCGAGTAGCCGACCTCT
AAGTCCGGGCACGGCGGTGCAAAACCGCTGCTATGCCTGCGGCCAGCTAG
TGAATCGTCGTGCCAGCGAACGCTTCATCAAGCCAGCACTCCCAACGCCC
ATGCTGGGCCTGAACACTTCCGCACCGAACGTGCTGACCTCAACCAACCC
ACTGCTGGGCATTTTGGGAACCGGCAGCTCCTCATCGTCTGCGTCCGTGT
CAGCTGGGAATGCCGCTGGCGGCTTTCTCTCGAATCTGGGAGGCGAACGC
CTAAGCCTTGGCTCGTCAAATTCGGCTGGCGGCAGTGCCACCTTCTTGGC
CGGCGGTGGAGGTGGAGGTCTGCTGGCCCAGCTCACTAGCCACTCCAGCG
CTTCGTCGTCGTCGTCCAATTTGATGAACATCAGCCTGAACAACTCGTCC
AGCGGCAATCTTGTTAACAGCAGCAGCAACTCCTCACTGTCGGCGTTTAC
GCCAACCAATCCGCCCAGCTCGGCGGCCACGGCCTTTATCCAGCCAGCCA
GTCCAATGGACACGTCCACCTGCAAGGACTAGAAGCTTTCTAGACCAT

BS12642.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6664-RC 1599 CG6664-PC 1..1599 134..1732 7890 99.6 Plus
CG6664-RB 1599 CG6664-PB 1..1599 134..1732 7890 99.6 Plus
CG6664-RA 1599 CG6664-PA 1..1599 134..1732 7890 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6664-RA 2482 CG6664-RA 308..1918 122..1732 7950 99.6 Plus
CG6664-RB 2552 CG6664-RB 380..1988 124..1732 7940 99.6 Plus
CG6664-RC 2603 CG6664-RC 436..2039 129..1732 7915 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17013993..17014904 1252..341 4560 100 Minus
3L 28110227 3L 17013450..17013930 1732..1252 2345 99.2 Minus
3L 28110227 3L 17015140..17015373 250..17 1110 98.3 Minus
3L 28110227 3L 17014987..17015077 340..250 455 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:29:15 has no hits.

BS12642.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:59 Download gff for BS12642.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RD 408..2123 17..1732 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:03 Download gff for BS12642.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 306..1918 117..1732 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:43 Download gff for BS12642.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 306..1918 117..1732 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:43 Download gff for BS12642.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17013450..17013929 1253..1732 99 <- Minus
3L 17013993..17014904 341..1252 100 <- Minus
3L 17014987..17015077 250..340 100 <- Minus
3L 17015141..17015373 17..249 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:03 Download gff for BS12642.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17006550..17007029 1253..1732 99 <- Minus
arm_3L 17007093..17008004 341..1252 100 <- Minus
arm_3L 17008087..17008177 250..340 100 <- Minus
arm_3L 17008241..17008473 17..249 98   Minus

BS12642.pep Sequence

Translation from 16 to 1731

> BS12642.pep
MYNIYVLKKRLAYIISRHTYMYMLKKRNGNGPFTFSFAGMESPCESESSL
DGGTMLPPSPVSREQLQKRIESLTQQNKVLKAELDTFKTKCKVVQEENRC
LKQASVIIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECLTN
DLSRKLDQLRQEKCKLEQTLEQEQECLVNKLMRKIEKLQAETDNKQTNLE
QLRREMVELENTLEQEQEALVNKLWKRMDKLETEKRSLQIKLDQPVSDPT
TPRDITNNAHANGGDTATSLSAHIQILRSEVLRYRSDLASAQKEATIKTQ
QYAQEEKSIREENARLQRKLKQEVERREALCRHLSESESSLEMDEERFYN
ENLMGGGSFAVATAAAAAAASAVSAQRQRTISSPVSHSPSSSRPLSPGTA
VQNRCYACGQLVNRRASERFIKPALPTPMLGLNTSAPNVLTSTNPLLGIL
GTGSSSSSASVSAGNAAGGFLSNLGGERLSLGSSNSAGGSATFLAGGGGG
GLLAQLTSHSSASSSSSNLMNISLNNSSSGNLVNSSSNSSLSAFTPTNPP
SSAATAFIQPASPMDTSTCKD*

BS12642.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6664-PC 532 CG6664-PC 1..532 40..571 2647 100 Plus
CG6664-PB 532 CG6664-PB 1..532 40..571 2647 100 Plus
CG6664-PA 532 CG6664-PA 1..532 40..571 2647 100 Plus