Clone Sequence Records
BS12642.3prime Sequence
671 bp (669 high quality bases) assembled on 2006-10-13
> BS12642.3prime
ATGGTCTAGAAAGCTTCTAGTCCTTGCAGGTGGACGTGTCCATTGGACTG
GCTGGCTGGATAAAGGCCGTGGCCGCCGAGCTGGGCGGATTGGTTGGCGT
AAACGCCGACAGTGAGGAGTTGCTGCTGCTGTTAACAAGATTGCCGCTGG
ACGAGTTGTTCAGGCTGATGTTCATCAAATTGGACGACGACGACGAAGCG
CTGGAGTGGCTAGTGAGCTGGGCCAGCAGACCTCCACCTCCACCGCCGGC
CAAGAAGGTGGCACTGCCGCCAGCCGAATTTGACGAGCCAAGGCTTAGGC
GTTCGCCTCCCAGATTCGAGAGAAAGCCGCCAGCGGCATTCCCAGCTGAC
ACGGACGCAGACGATGAGGAGCTGCCGGTTCCCAAAATGCCCAGCAGTGG
GTTGGTTGAGGTCAGCACGTTCGGTGCGGAAGTGTTCAGGCCCAGCATGG
GCGTTGGGAGTGCTGGCTTGATGAAGCGTTCGCTGGCACGACGATTCACT
AGCTGGCCGCAGGCATAGCAGCGGTTTTGCACCGCCGTGCCCGGACTTAG
AGGTCGGCTACTCGAGGGACTGTGGGAGACGGGACTGCTGATGGTGCGTT
GACGTTGGGCGCTCACCGCTGAAGCTGCGGCGGCGGCTGCTGCCGTCGCT
ACAGCGAACGAACCGCCTCCC
BS12642.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6664-PA | 1599 | CG6664-RA | 945..1599 | 671..17 | 3175 | 99.3 | Minus |
CG6664-PB | 1599 | CG6664-RB | 945..1599 | 671..17 | 3175 | 99.3 | Minus |
CG6664-PC | 1599 | CG6664-RC | 945..1599 | 671..17 | 3175 | 99.3 | Minus |
CG6664-PD | 1716 | CG6664-RD | 1062..1716 | 671..17 | 3175 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6664-RC | 2603 | CG6664-RC | 1385..2039 | 671..17 | 3215 | 99.4 | Minus |
CG6664-RB | 2552 | CG6664-RB | 1334..1988 | 671..17 | 3215 | 99.4 | Minus |
CG6664-RA | 2482 | CG6664-RA | 1264..1918 | 671..17 | 3215 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17013450..17013930 | 17..497 | 2345 | 99.2 | Plus |
3L | 28110227 | 3L | 17013993..17014167 | 497..671 | 875 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 00:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2961 | 171..20 | 126 | 57 | Minus |
BS12642.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:52 Download gff for
BS12642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6664-PD | 1062..1716 | 17..671 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:45:07 Download gff for
BS12642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6664-RB | 1334..1991 | 14..671 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:51 Download gff for
BS12642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6664-RA | 1264..1921 | 14..671 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:51 Download gff for
BS12642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17013447..17013929 | 14..496 | 98 | <- | Plus |
3L | 17013993..17014167 | 497..671 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:45:07 Download gff for
BS12642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17006547..17007029 | 14..496 | 98 | <- | Plus |
arm_3L | 17007093..17007267 | 497..671 | 100 | | Plus |
BS12642.5prime Sequence
873 bp (796 high quality bases) assembled on 2006-10-13
> BS12642.5prime
GAAGTTATCAGTCGACATGTATAATATATATGTGCTTAAAAAGCGACTGG
CATACATTATTTCTCGTCATACATATATGTATATGCTCAAAAAACGTAAT
GGCAATGGGCCATTTACCTTTAGTTTTGCAGGCATGGAAAGTCCCTGTGA
ATCCGAAAGTTCGCTGGACGGCGGCACCATGCTGCCACCAAGCCCAGTTT
CCCGGGAGCAGCTCCAGAAGAGGATCGAATCGCTTACCCAGCAGAACAAG
GTGCTGAAAGCCGAACTGGATACCTTCAAGACCAAGTGCAAAGTGGTGCA
AGAGGAGAATCGCTGCCTCAAGCAAGCCTCAGTCATCATTCAAGCCAAAG
CCGAGCAGGAGGAAGAATACATCTCAAACACGCTGCTAAAAAAGATTCAG
GCCCTCAAAAAGGAGAAGGAGACTCTGGCGCACCACTACGAGCGCGAGGA
GGAGTGTCTGACCAACGATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGG
AGAAGTGCAAGCTGGAGCAGACACTTGAGCAGGAGCAGGAGTGCCTCGTC
AACAAGCTTATGCGCAAGATTGAGAAGCTCCAGGCGGAGACGGACAACAA
GCAGACCAATCTCGAGCAGCTGCGCCGCGAAATGGTCGAGTTGGAGAACA
CGCTTGAGCAGGAACAGGAAGCTCTTGTAAACAAGCTGTGGAAGCGCATG
GACAAGCTGGAGACCGAGAAGCGTTCGCTGCAAATCAAGCTGGATCAGCC
GGTTTCCGATCCGACTACGCCGCGAGACATCACAAACAACGCCCATGCCA
ATGGTGGCGATACGGCCACCAGTTTGAGTGCTCATATCCAGATTCTGCGC
TCCGAAGTGCTTCGCTATCGCTC
BS12642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6664-PD | 1716 | CG6664-RD | 1..857 | 17..873 | 4185 | 99.5 | Plus |
CG6664-PA | 1599 | CG6664-RA | 1..740 | 134..873 | 3625 | 99.5 | Plus |
CG6664-PB | 1599 | CG6664-RB | 1..740 | 134..873 | 3625 | 99.5 | Plus |
CG6664-PC | 1599 | CG6664-RC | 1..740 | 134..873 | 3625 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6664-RA | 2482 | CG6664-RA | 308..1059 | 122..873 | 3715 | 99.6 | Plus |
CG6664-RB | 2552 | CG6664-RB | 380..1129 | 124..873 | 3705 | 99.6 | Plus |
CG6664-RC | 2603 | CG6664-RC | 436..1180 | 129..873 | 3680 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17014372..17014904 | 873..341 | 2665 | 100 | Minus |
3L | 28110227 | 3L | 17015140..17015373 | 250..17 | 1110 | 98.3 | Minus |
3L | 28110227 | 3L | 17014987..17015077 | 340..250 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:48:44 has no hits.
BS12642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:52 Download gff for
BS12642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6664-PD | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:45:09 Download gff for
BS12642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6664-RA | 306..1059 | 117..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:56 Download gff for
BS12642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6664-RA | 306..1059 | 117..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:56 Download gff for
BS12642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17014372..17014904 | 341..873 | 100 | <- | Minus |
3L | 17014987..17015077 | 250..340 | 100 | <- | Minus |
3L | 17015141..17015378 | 9..249 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:45:09 Download gff for
BS12642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17007472..17008004 | 341..873 | 100 | <- | Minus |
arm_3L | 17008087..17008177 | 250..340 | 100 | <- | Minus |
arm_3L | 17008241..17008478 | 9..249 | 96 | | Minus |
BS12642.complete Sequence
1748 bp assembled on 2009-08-24
GenBank Submission: KX801856
> BS12642.complete
GAAGTTATCAGTCGACATGTATAATATATATGTGCTTAAAAAGCGACTGG
CATACATTATTTCTCGTCATACATATATGTATATGCTCAAAAAACGTAAT
GGCAATGGGCCATTTACCTTTAGTTTTGCAGGCATGGAAAGTCCCTGTGA
ATCCGAAAGTTCGCTGGACGGCGGCACCATGCTGCCACCAAGCCCAGTTT
CCCGGGAGCAGCTCCAGAAGAGGATCGAATCGCTTACCCAGCAGAACAAG
GTGCTGAAAGCCGAACTGGATACCTTCAAGACCAAGTGCAAAGTGGTGCA
AGAGGAGAATCGCTGCCTCAAGCAAGCCTCAGTCATCATTCAAGCCAAAG
CCGAGCAGGAGGAAGAATACATCTCAAACACGCTGCTAAAAAAGATTCAG
GCCCTCAAAAAGGAGAAGGAGACTCTGGCGCACCACTACGAGCGCGAGGA
GGAGTGTCTGACCAACGATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGG
AGAAGTGCAAGCTGGAGCAGACACTTGAGCAGGAGCAGGAGTGCCTCGTC
AACAAGCTTATGCGCAAGATTGAGAAGCTCCAGGCGGAGACGGACAACAA
GCAGACCAATCTCGAGCAGCTGCGCCGCGAAATGGTCGAGTTGGAGAACA
CGCTTGAGCAGGAACAGGAAGCTCTTGTAAACAAGCTGTGGAAGCGCATG
GACAAGCTGGAGACCGAGAAGCGTTCGCTGCAAATCAAGCTGGATCAGCC
GGTTTCCGATCCGACTACGCCGCGAGACATCACAAACAACGCCCATGCCA
ATGGTGGCGATACGGCCACCAGTTTGAGTGCTCATATCCAGATTCTGCGC
TCCGAAGTGCTTCGCTATCGCTCCGACCTGGCGAGCGCTCAGAAGGAAGC
CACTATCAAAACACAGCAGTATGCGCAGGAAGAGAAGTCGATTCGCGAGG
AAAACGCTCGCCTTCAGCGCAAGCTAAAGCAGGAGGTGGAGCGCCGCGAA
GCCCTATGCCGGCACCTCTCCGAATCGGAATCCTCGCTGGAGATGGACGA
GGAACGCTTCTACAACGAGAACCTGATGGGAGGCGGTTCGTTCGCTGTAG
CGACGGCAGCAGCCGCCGCCGCAGCTTCAGCGGTGAGCGCCCAACGTCAA
CGCACCATCAGCAGTCCCGTCTCCCACAGTCCCTCGAGTAGCCGACCTCT
AAGTCCGGGCACGGCGGTGCAAAACCGCTGCTATGCCTGCGGCCAGCTAG
TGAATCGTCGTGCCAGCGAACGCTTCATCAAGCCAGCACTCCCAACGCCC
ATGCTGGGCCTGAACACTTCCGCACCGAACGTGCTGACCTCAACCAACCC
ACTGCTGGGCATTTTGGGAACCGGCAGCTCCTCATCGTCTGCGTCCGTGT
CAGCTGGGAATGCCGCTGGCGGCTTTCTCTCGAATCTGGGAGGCGAACGC
CTAAGCCTTGGCTCGTCAAATTCGGCTGGCGGCAGTGCCACCTTCTTGGC
CGGCGGTGGAGGTGGAGGTCTGCTGGCCCAGCTCACTAGCCACTCCAGCG
CTTCGTCGTCGTCGTCCAATTTGATGAACATCAGCCTGAACAACTCGTCC
AGCGGCAATCTTGTTAACAGCAGCAGCAACTCCTCACTGTCGGCGTTTAC
GCCAACCAATCCGCCCAGCTCGGCGGCCACGGCCTTTATCCAGCCAGCCA
GTCCAATGGACACGTCCACCTGCAAGGACTAGAAGCTTTCTAGACCAT
BS12642.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6664-RC | 1599 | CG6664-PC | 1..1599 | 134..1732 | 7890 | 99.6 | Plus |
CG6664-RB | 1599 | CG6664-PB | 1..1599 | 134..1732 | 7890 | 99.6 | Plus |
CG6664-RA | 1599 | CG6664-PA | 1..1599 | 134..1732 | 7890 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6664-RA | 2482 | CG6664-RA | 308..1918 | 122..1732 | 7950 | 99.6 | Plus |
CG6664-RB | 2552 | CG6664-RB | 380..1988 | 124..1732 | 7940 | 99.6 | Plus |
CG6664-RC | 2603 | CG6664-RC | 436..2039 | 129..1732 | 7915 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17013993..17014904 | 1252..341 | 4560 | 100 | Minus |
3L | 28110227 | 3L | 17013450..17013930 | 1732..1252 | 2345 | 99.2 | Minus |
3L | 28110227 | 3L | 17015140..17015373 | 250..17 | 1110 | 98.3 | Minus |
3L | 28110227 | 3L | 17014987..17015077 | 340..250 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:29:15 has no hits.
BS12642.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:59 Download gff for
BS12642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6664-RD | 408..2123 | 17..1732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:03 Download gff for
BS12642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6664-RA | 306..1918 | 117..1732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:43 Download gff for
BS12642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6664-RA | 306..1918 | 117..1732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:43 Download gff for
BS12642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17013450..17013929 | 1253..1732 | 99 | <- | Minus |
3L | 17013993..17014904 | 341..1252 | 100 | <- | Minus |
3L | 17014987..17015077 | 250..340 | 100 | <- | Minus |
3L | 17015141..17015373 | 17..249 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:03 Download gff for
BS12642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17006550..17007029 | 1253..1732 | 99 | <- | Minus |
arm_3L | 17007093..17008004 | 341..1252 | 100 | <- | Minus |
arm_3L | 17008087..17008177 | 250..340 | 100 | <- | Minus |
arm_3L | 17008241..17008473 | 17..249 | 98 | | Minus |
BS12642.pep Sequence
Translation from 16 to 1731
> BS12642.pep
MYNIYVLKKRLAYIISRHTYMYMLKKRNGNGPFTFSFAGMESPCESESSL
DGGTMLPPSPVSREQLQKRIESLTQQNKVLKAELDTFKTKCKVVQEENRC
LKQASVIIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECLTN
DLSRKLDQLRQEKCKLEQTLEQEQECLVNKLMRKIEKLQAETDNKQTNLE
QLRREMVELENTLEQEQEALVNKLWKRMDKLETEKRSLQIKLDQPVSDPT
TPRDITNNAHANGGDTATSLSAHIQILRSEVLRYRSDLASAQKEATIKTQ
QYAQEEKSIREENARLQRKLKQEVERREALCRHLSESESSLEMDEERFYN
ENLMGGGSFAVATAAAAAAASAVSAQRQRTISSPVSHSPSSSRPLSPGTA
VQNRCYACGQLVNRRASERFIKPALPTPMLGLNTSAPNVLTSTNPLLGIL
GTGSSSSSASVSAGNAAGGFLSNLGGERLSLGSSNSAGGSATFLAGGGGG
GLLAQLTSHSSASSSSSNLMNISLNNSSSGNLVNSSSNSSLSAFTPTNPP
SSAATAFIQPASPMDTSTCKD*
BS12642.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6664-PC | 532 | CG6664-PC | 1..532 | 40..571 | 2647 | 100 | Plus |
CG6664-PB | 532 | CG6664-PB | 1..532 | 40..571 | 2647 | 100 | Plus |
CG6664-PA | 532 | CG6664-PA | 1..532 | 40..571 | 2647 | 100 | Plus |