Clone Sequence Records
BS12644.3prime Sequence
774 bp (757 high quality bases) assembled on 2006-10-13
> BS12644.3prime
ATGGTCTAGAAAGCTTCTAGATCGCCTGATGCTGTTGACGCTGTATTCGC
ACCTTGTGAATTTGCCGCTGCTGAAGAGTTACCATTGATGTAGCAGCGGC
ATTGGCAGCTCCTGAGTTTCCCATCACGTTGAGACTGTGGGGCTGCGAGT
ATTCTTGCAGCTGACGGTGTTTCTGCTGTTGGTACTGATGCTGCTGGTGC
TGTTGATGCTGACCGTTCCCCATTCTGTTGTCCCTGATACTTCGTTGGCC
AGAGAAGGGTAACGAAACATTCGACGAAGATGGTCCGATGCCAACCAGGC
TCTGCGACTTGGAGTTGCGAGTCAAGGGCTTGTGATTTTTGACGATGTCA
CAGCTGTGCTGCCATTGCCAGCAGCTGCGGCAGAAGTATCGGAAGCACGA
TAATTCCCTACAATAGTAGGGACCGTGCTGCACACCGCATATGGAACATA
GGGCATCCTCCAAGTAGGGATCCACCTGCACCTTCTTGGTGAACTTCGTG
GTCCTAATCTCGATAAAGGCGGCCGAAACAGCTTTCATGTAGGAGCGAAA
GTTGCTAAATGTCACACGTCCCGATCCGATCGGGTACTTGTACTTGTCCG
TATCTATACCAGCATACAGCACGCCGTCGAAAAGATCATCCATTATATTT
CCCAAGCCCTCGGCAGTCAGTTTTCCATGCAGTGCGCCCACAAACACGGT
TTTCGTTGGGTCAAGTTTCTGGGAGCTGGATCGCACAAAATTGGAGTCAG
CGATAATCCCAGGAATGACTTCAA
BS12644.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10868-PA | 2748 | orb-RA | 1991..2748 | 774..17 | 3740 | 99.7 | Minus |
| CG10868-PC | 1680 | orb-RC | 923..1680 | 774..17 | 3740 | 99.7 | Minus |
| CG10868-PB | 2742 | orb-RB | 1985..2742 | 774..17 | 3740 | 99.7 | Minus |
| CG10868-PD | 2742 | orb-RD | 1985..2742 | 774..17 | 3740 | 99.7 | Minus |
| CG10868-PE | 1680 | orb-RE | 923..1680 | 774..17 | 3740 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb-RG | 8899 | CG10868-RG | 2899..3657 | 774..16 | 3765 | 99.7 | Minus |
| orb-RF | 3079 | CG10868-RF | 2123..2881 | 774..16 | 3765 | 99.7 | Minus |
| orb-RE | 1964 | CG10868-RE | 994..1752 | 774..16 | 3765 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23266280..23266664 | 390..774 | 1895 | 99.5 | Plus |
| 3R | 32079331 | 3R | 23265852..23266226 | 16..390 | 1875 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 16:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2536 | 238..24 | 226 | 59.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6947 | 241..102 | 207 | 64.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1601 | 249..150 | 157 | 67.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6944 | 247..128 | 152 | 64 | Minus |
BS12644.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:53 Download gff for
BS12644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10868-PE | 925..1680 | 17..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:05:52 Download gff for
BS12644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RE | 996..1758 | 7..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:35 Download gff for
BS12644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RE | 996..1758 | 7..772 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:35 Download gff for
BS12644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23265846..23266225 | 7..389 | 98 | <- | Plus |
| 3R | 23266280..23266662 | 390..772 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:05:52 Download gff for
BS12644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19091568..19091947 | 7..389 | 98 | <- | Plus |
| arm_3R | 19092002..19092384 | 390..772 | 99 | | Plus |
BS12644.5prime Sequence
611 bp (565 high quality bases) assembled on 2006-10-13
> BS12644.5prime
GAAGTTATCAGTCGACATGGCTAAAGTTTTACGTGTGAATTTGCTGTCTG
TAAATAGCAACAAAATTCCACATCAACAACAGCAACAACAACAGCAGCAG
CAGCAACAACAGCAGCAGCAACAACAGAATCAGCAGCAATTGCAGGTTCA
GCAACAACATCAGTTGCAGCAGCAGTTTGTTAACCTAAACAGGAACTACG
AGCAACAGATATCTGCCAATTTGGGTAGCCAACAACATGGGTTCGAGCAC
AACGGCGTGGGTGTGGGTGCTTCTAGTAACGGAAATGAGAACTGCTTTAG
CCAGTATAATCTAGAAAACATCACCAGTGTGGACATGGAGCTGGCCAAAC
TGCAGAATTTGCAACGCATCAACACGCTAAAGCTCCTGCATGCCCAAGCT
CAACAAATGCCGCTGATCAACCAGCTCCTGCAGAGCTATGCCGGCAACGC
CATAGGCAGCGTCGGTGGAAGCAATCTTGGTAACTTGATGAGCGCAGGCG
GATCATCACTGATGACAGAAATGGCGGGAAACGTTGGCGGCATTATAACC
ACCAACGATGGCCACCTGCATCGCGTAGCTAAGTTCTATAAGAGTTCGGC
TGCCCTGAGCG
BS12644.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10868-PC | 1680 | orb-RC | 1..591 | 17..607 | 2880 | 99.4 | Plus |
| CG10868-PE | 1680 | orb-RE | 1..591 | 17..607 | 2880 | 99.4 | Plus |
| CG10868-PA | 2748 | orb-RA | 1090..1659 | 38..607 | 2775 | 99.4 | Plus |
| CG10868-PB | 2742 | orb-RB | 1084..1653 | 38..607 | 2775 | 99.4 | Plus |
| CG10868-PD | 2742 | orb-RD | 1084..1653 | 38..607 | 2775 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb-RE | 1964 | CG10868-RE | 72..666 | 17..611 | 2915 | 99.3 | Plus |
| orb-RC | 2957 | CG10868-RC | 72..666 | 17..611 | 2915 | 99.3 | Plus |
| orb-RG | 8899 | CG10868-RG | 1998..2571 | 38..611 | 2810 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23267107..23267681 | 611..37 | 2815 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:06:21 has no hits.
BS12644.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:54 Download gff for
BS12644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10868-PE | 1..595 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:05:59 Download gff for
BS12644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RC | 67..666 | 11..611 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:06 Download gff for
BS12644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RC | 67..666 | 11..611 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:06 Download gff for
BS12644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23267107..23267680 | 38..611 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:05:59 Download gff for
BS12644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19092829..19093402 | 38..611 | 99 | <- | Minus |
BS12644.complete Sequence
1712 bp assembled on 2008-08-14
GenBank Submission: FJ638847
> BS12644.complete
GAAGTTATCAGTCGACATGGCTAAAGTTTTACGTGTGAATTTGCTGTCTG
TAAATAGCAACAAAATTCCACATCAACAACAGCAACAACAACAGCAGCAG
CAGCAACAACAGCAGCAGCAACAACAGAATCAGCAGCAATTGCAGGTTCA
GCAACAACATCAGTTGCAGCAGCAGTTTGTTAACCTAAACAGGAACTACG
AGCAACAGATATCTGCCAATTTGGGTAGCCAACAACATGGGTTCGAGCAC
AACGGCGTGGGTGTGGGTGCTTCTAGTAGCGGAAATGAGAACTGCTTTAG
CCAGTATAATCTAGAAAACATCACCAGTGTGGACATGGAGCTGGCCAAAC
TGCAGAATTTGCAACGCATCAACACGCTAAAGCTCCTGCATGCCCAAGCT
CAACAAATGCCGCTGATCAACCAGCTCCTGCAGAGCTATGCCGGCAACGC
CATAGGCAGCGTCGGTGGAAGCAATCTTGGTAACTTGATGAGCGCAGGCG
GATCATCACTGATGACAGAAATGGCGGGAAACGTTGGCGGCATTATAACC
ACCAACGATGGCCACCTGGATCGCGTAGCTAAGTTCTATAAGAGTTCGGC
TGCCCTGTGCGATGCCACATGCACATGGAGTGGACACCTGCCGCCGCGTT
CGCACCGTATGCTCAACTATTCTCCCAAGGTCTTCCTCGGCGGGATTCCC
TGGGATATTAGTGAGCAGTCGCTCATCCAGATCTTCAAGCCATTTGGATC
TATTAAAGTGGAGTGGCCCGGCAAGGAGCAGCAGGCGGCTCAGCCCAAGG
GTTATGTTTACATAATCTTTGAATCGGACAAGCAGGTCAAGGCATTACTT
TCGGCCTGTGTGCTTCAGGTGGATGATTCTCACTGTGGTAGGAACTACTT
CTTCAAAATCTCTTCGCGGCGTATTAAGTCCAAGGATGTTGAAGTCATTC
CTTGGATTATCGCTGACTCCAATTTTGTGCGATCCAGCTCCCAGAAACTT
GACCCAACGAAAACCGTGTTTGTGGGCGCACTGCATGGAAAACTGACTGC
CGAGGGCTTGGGAAATATAATGGATGATCTTTTCGACGGCGTGCTGTATG
CTGGTATAGATACGGACAAGTACAAGTACCCGATCGGATCGGGACGTGTG
ACATTTAGCAACTTTCGCTCCTACATGAAAGCTGTTTCGGCCGCCTTTAT
CGAGATTAGGACCACGAAGTTCACCAAGAAGGTGCAGGTGGATCCCTACT
TGGAGGATGCCCTATGTTCCATATGCGGTGTGCAGCACGGTCCCTACTAT
TGTAGGGAATTATCGTGCTTCCGATACTTCTGCCGCAGCTGCTGGCAATG
GCAGCACAGCTGTGACATCGTCAAAAATCACAAGCCCTTGACTCGCAACT
CCAAGTCGCAGAGCCTGGTTGGCATCGGACCATCTTCGTCGAATGTTTCG
TTACCCTTCTCTGGCCAACGAAGTATCAGGGACAACAGAATGGGGAACGG
TCAGCATCAACAGCACCAGCAGCATCAGTACCAACAGCAGAAACACCGTC
AGCTGCAAGAATACTCGCAGCCCCACAGTCTCAACGTGATGGGAAACTCA
GGAGCTGCCAATGCCGCTGCTACATCAATGGTAACTCTTCAGCAGCGGCA
AATTCACAAGGTGCGAATACAGCGTCAACAGCATCAGGCGATCTAGAAGC
TTTCTAGACCAT
BS12644.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb-RE | 1680 | CG10868-PE | 1..1680 | 17..1696 | 8370 | 99.9 | Plus |
| orb-RC | 1680 | CG10868-PC | 1..1680 | 17..1696 | 8370 | 99.9 | Plus |
| orb-RG | 2748 | CG10868-PG | 1090..2748 | 38..1696 | 8265 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb-RE | 1964 | CG10868-RE | 72..1752 | 17..1697 | 8375 | 99.9 | Plus |
| orb-RC | 2957 | CG10868-RC | 72..1752 | 17..1697 | 8375 | 99.9 | Plus |
| orb-RG | 8899 | CG10868-RG | 1998..3657 | 38..1697 | 8270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23266962..23267681 | 756..37 | 3585 | 99.9 | Minus |
| 3R | 32079331 | 3R | 23266280..23266665 | 1323..938 | 1915 | 99.7 | Minus |
| 3R | 32079331 | 3R | 23265852..23266226 | 1697..1323 | 1875 | 100 | Minus |
| 3R | 32079331 | 3R | 23266719..23266901 | 939..757 | 915 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2536 | 1475..1689 | 226 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6947 | 1472..1611 | 207 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1601 | 1464..1563 | 157 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6944 | 1466..1585 | 152 | 64 | Plus |
BS12644.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:44:55 Download gff for
BS12644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RE | 67..1758 | 11..1706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:37 Download gff for
BS12644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RC | 72..1751 | 17..1696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:51 Download gff for
BS12644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RE | 72..1751 | 17..1696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:06 Download gff for
BS12644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RC | 72..1751 | 17..1696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:06 Download gff for
BS12644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23265853..23266225 | 1324..1696 | 100 | <- | Minus |
| 3R | 23266280..23266665 | 938..1323 | 99 | <- | Minus |
| 3R | 23266721..23266901 | 757..937 | 100 | <- | Minus |
| 3R | 23266962..23267680 | 38..756 | 99 | <- | Minus |
| 3R | 23267821..23267841 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:37 Download gff for
BS12644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19091575..19091947 | 1324..1696 | 100 | <- | Minus |
| arm_3R | 19092002..19092387 | 938..1323 | 99 | <- | Minus |
| arm_3R | 19092443..19092623 | 757..937 | 100 | <- | Minus |
| arm_3R | 19092684..19093402 | 38..756 | 99 | <- | Minus |
| arm_3R | 19093543..19093563 | 17..37 | 100 | | Minus |
BS12644.pep Sequence
Translation from 16 to 1695
> BS12644.pep
MAKVLRVNLLSVNSNKIPHQQQQQQQQQQQQQQQQQQNQQQLQVQQQHQL
QQQFVNLNRNYEQQISANLGSQQHGFEHNGVGVGASSSGNENCFSQYNLE
NITSVDMELAKLQNLQRINTLKLLHAQAQQMPLINQLLQSYAGNAIGSVG
GSNLGNLMSAGGSSLMTEMAGNVGGIITTNDGHLDRVAKFYKSSAALCDA
TCTWSGHLPPRSHRMLNYSPKVFLGGIPWDISEQSLIQIFKPFGSIKVEW
PGKEQQAAQPKGYVYIIFESDKQVKALLSACVLQVDDSHCGRNYFFKISS
RRIKSKDVEVIPWIIADSNFVRSSSQKLDPTKTVFVGALHGKLTAEGLGN
IMDDLFDGVLYAGIDTDKYKYPIGSGRVTFSNFRSYMKAVSAAFIEIRTT
KFTKKVQVDPYLEDALCSICGVQHGPYYCRELSCFRYFCRSCWQWQHSCD
IVKNHKPLTRNSKSQSLVGIGPSSSNVSLPFSGQRSIRDNRMGNGQHQQH
QQHQYQQQKHRQLQEYSQPHSLNVMGNSGAANAAATSMVTLQQRQIHKVR
IQRQQHQAI*
BS12644.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb-PE | 559 | CG10868-PE | 1..559 | 1..559 | 2930 | 100 | Plus |
| orb-PC | 559 | CG10868-PC | 1..559 | 1..559 | 2930 | 100 | Plus |
| orb-PG | 915 | CG10868-PG | 363..915 | 7..559 | 2902 | 99.8 | Plus |
| orb-PF | 617 | CG10868-PF | 65..617 | 7..559 | 2902 | 99.8 | Plus |
| orb-PD | 913 | CG10868-PD | 361..913 | 7..559 | 2902 | 99.8 | Plus |
