Clone Sequence Records
BS12645.3prime Sequence
797 bp (706 high quality bases) assembled on 2006-10-13
> BS12645.3prime
ATGGTCTAGAAAGCTTTCACCAGCGGTTCGTATAGAACTGATTGATGCCA
AGCACATGCTTCTCCTCATGGTACTTTTGAAGGATATGTGTGATGACCGA
GGTTGTGTCGTTGTCGCCACGCCACACGCGTATCGCATGTTCGTTTTCCA
GGATGCCCAGAAATGCCAAAAAAGTCTTTGGATTGCTTAGGGTCATCTGG
ACTTGTGGCATTTCCAGGATCACCTTTAGGATGGGCGAATCGGGCGCCAA
GCCTTCACGCAGTTCAATAACGCTACCCGATCGATTGTCGCACAACCATT
CGCACGCGGACGCCTTGTTGTTGCCAGTTTTCTTCAGCGCCGCAAGCACT
GCCGTCTCCTCGAAGCCCATTTCTGTAAGCGATTCTACAATCTCATCGCT
GGGAGGGGAATCCCGGTGGCTGTAGATTCGTACAATCTCAATCAAGGCAG
CAGTGTTTTCAATGGTTTCATTATTGGTGACAATCGTGGAGGGTGAGATG
GAAGATAGACTGTGCTGCATATTCATGCCCGGCGGTTCCTGTGGATTTTC
CTCGTTTTGGTTCTGTATTAGCCACTCCATCGTGGTCGAGTAAATGCCAT
TGTGTGCTTTTAAGGCAAATGCGGCTAGCTCCCGCTTGAAGCCCATGTCC
ACGAGGCATTGCAGCGTATCCGCTTGCTGATTTCGGCGATTGATCAAACG
TTGCTTTAGCATAGCTATCAGGCGTGGAGCATAAGGGCCAGCTCCTATAA
CCGCCGCAAAAGCTTGAGCCAAAGAGATCAACACCTTTCGCACATCG
BS12645.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11025-PA | 1674 | isopeptidase-T-3-RA | 894..1674 | 797..17 | 3805 | 99.4 | Minus |
CG11025-PB | 1308 | isopeptidase-T-3-RB | 528..1308 | 797..17 | 3805 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RC | 2491 | CG11025-RC | 1043..1826 | 797..14 | 3860 | 99.5 | Minus |
isopeptidase-T-3-RB | 1778 | CG11025-RB | 632..1415 | 797..14 | 3860 | 99.5 | Minus |
isopeptidase-T-3-RA | 2479 | CG11025-RA | 1031..1814 | 797..14 | 3860 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19671914..19672242 | 797..469 | 1630 | 99.7 | Minus |
2R | 25286936 | 2R | 19672294..19672597 | 469..166 | 1475 | 99 | Minus |
2R | 25286936 | 2R | 19672660..19672812 | 166..14 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:10:00 has no hits.
BS12645.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:54 Download gff for
BS12645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11025-PB | 528..1308 | 17..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:08 Download gff for
BS12645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 1031..1814 | 14..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:28 Download gff for
BS12645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 1031..1814 | 14..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:28 Download gff for
BS12645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19671914..19672241 | 470..797 | 99 | -> | Minus |
2R | 19672294..19672597 | 166..469 | 99 | -> | Minus |
2R | 19672661..19672812 | 14..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:08 Download gff for
BS12645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15559419..15559746 | 470..797 | 99 | -> | Minus |
arm_2R | 15560166..15560317 | 14..165 | 100 | | Minus |
arm_2R | 15559799..15560102 | 166..469 | 99 | -> | Minus |
BS12645.5prime Sequence
787 bp (778 high quality bases) assembled on 2006-10-13
> BS12645.5prime
GAAGTTATCAGTCGACATGCAAAAACTGCGCAGTTTGTTTCTCAGGAAAT
CAGCCCATACAAATCGCCCAGGTAGCTCTACTTCTGGCGAGGCAGACGAT
GCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGGTAATCTGCCCCAGCTC
TCGGGTTCTTATCTTCAAAACGGACGTTAATAAGCGCCTAAACGAGCTGA
AGAGTGAGGTGATTCTGGAACTGAGCGACGATCCCGACTCCATCCAGCTA
TTTGCCCCAGATGTGCGGCATCTTAATCCGCGATACCGTCTCTATCGGGC
GGAATACTTCGGCGGCGAGCTTAACGAGGGCGACACGCTGGCCCAGCTAA
AAGTTCGCAACAATGAGACTTTTATACTCTCTCCACGACGCAATACTCTG
CCGCAGACTGTTTCACGGATACGTGAGGTTCCTGGCCCAAATGAGCAGCT
GGTGGAGAGCGCCACCCGATACGTGCCCGTCAATTGCAACCAGCTGCCCA
CCATCGATATTAATGAAATCTTTCAGCAGTCGAATATCCAATACGATGTG
CGAAAGGTGTTGATCTCTTTGGCTCAAGCTTCTGCGGCGGTTATAGGAGC
TGGCCCTTATGCTCCACGCCTGATAGCTATGCTAAAGCAACGTTTGATCA
ATCGCCGAAATCAGCAAGCGGATACGCTGCAATGCCTCGTGGACATGGGC
TTCAAGCGGGAGCTAGCCGCATTTGCCTTAAAAGCACACAATGGCATTTA
CTCGACCACGATGGAGTGGCTAATACAGAACCAAAAC
BS12645.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11025-PB | 1308 | isopeptidase-T-3-RB | 1..771 | 17..787 | 3805 | 99.7 | Plus |
CG11025-PA | 1674 | isopeptidase-T-3-RA | 396..1137 | 46..787 | 3660 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RB | 1778 | CG11025-RB | 105..875 | 17..787 | 3825 | 99.7 | Plus |
isopeptidase-T-3-RC | 2491 | CG11025-RC | 533..1286 | 34..787 | 3740 | 99.7 | Plus |
isopeptidase-T-3-RA | 2479 | CG11025-RA | 533..1274 | 46..787 | 3680 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19671359..19671850 | 44..535 | 2430 | 99.6 | Plus |
2R | 25286936 | 2R | 19671906..19672157 | 536..787 | 1260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:46:11 has no hits.
BS12645.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:55 Download gff for
BS12645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11025-PB | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:37 Download gff for
BS12645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..875 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:03 Download gff for
BS12645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..875 | 17..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:03 Download gff for
BS12645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19671267..19671295 | 17..45 | 100 | -> | Plus |
2R | 19671361..19671850 | 46..535 | 99 | -> | Plus |
2R | 19671906..19672157 | 536..787 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:37 Download gff for
BS12645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15558772..15558800 | 17..45 | 100 | -> | Plus |
arm_2R | 15558866..15559355 | 46..535 | 99 | -> | Plus |
arm_2R | 15559411..15559662 | 536..787 | 100 | | Plus |
BS12645.complete Sequence
1340 bp assembled on 2006-11-01
GenBank Submission: FJ637247
> BS12645.complete
GAAGTTATCAGTCGACATGCAAAAACTGCGCAGTTTGTTTCTCAGGAAAT
CAGCCCATACAAATCGCCCAGGTAGCTCTACTTCTGGCGAGGCAGACGAT
GCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGGTAATCTGCCCCAGCTC
TCGGGTTCTTATCTTCAAAACGGACGTTAATAAGCGCCTAAACGAGCTGA
AGAGTGAGGTGATTCTGGAACTGAGCGACGATCCCGACTCCATCCAGCTA
TTTGCCCCAGATGTGCGGCATCTTAATCCGCGATACCGTCTCTATCGGGC
GGAATACTTCGGCGGCGAGCTTAACGAGGGCGACACGCTGGCCCAGCTAA
AAGTTCGCAACAATGAGACTTTTATACTCTCTCCACGACGCAATACTCTG
CCGCAGACTGTTTCACGGATACGTGAGGTTCCTGGCCCAAATGAGCAGCT
GGTGGAGAGCGCCACCCGATACGTGCCCGTCAATTGCAACCAGCTGCCCA
CCATCGATATTAATGAAATCTTTCAGCAGTCGAATATCCAATACGATGTG
CGAAAGGTGTTGATCTCTTTGGCTCAAGCTTCTGCGGCGGTTATAGGAGC
TGGCCCTTATGCTCCACGCCTGATAGCTATGCTAAAGCAACGTTTGATCA
ATCGCCGAAATCAGCAAGCGGATACGCTGCAATGCCTCGTGGACATGGGC
TTCAAGCGGGAGCTAGCCGCATTTGCCTTAAAAGCACACAATGGCATTTA
CTCGACCACGATGGAGTGGCTAATACAGAACCAAAACGAGGAAAATCCAC
AGGAACCGCCGGGCATGAATATGCAGCACAGTCTATCTTCCATCTCACCC
TCCACGATTGTCACCAATAATGAAACCATTGAAAACACTGCTGCCTTGAT
TGAGATTGTACGAATCTACAGCCACCGGGATTCCCCTCCCAGCGATGAGA
TTGTAGAATCGCTTACAGAAATGGGCTTCGAGGAGACGGCAGTGCTTGCG
GCGCTGAAGAAAACTGGCAACAACAAGGCGTCCGCGTGCGAATGGTTGTG
CGACAATCGATCGGGTAGCGTTATTGAACTGCGTGAAGGCTTGGCGCCCG
ATTCGCCCATCCTAAAGGTGATCCTGGAAATGCCACAAGTCCAGATGACC
CTAAGCAATCCAAAGACTTTTTTGGCATTTCTGGGCATCCTGGAAAACGA
ACATGCGATACGCGTGTGGCGTGGCGACAACGACACAACCTCGGTCATCA
CACATATCCTTCAAAAGTACCATGAGGAGAAGCATGTGCTTGGCATCAAT
CAGTTCTATACGAACCGCTGGTGAAAGCTTTCTAGACCAT
BS12645.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RB | 1308 | CG11025-PB | 1..1308 | 17..1324 | 6465 | 99.6 | Plus |
isopeptidase-T-3-RC | 1686 | CG11025-PC | 396..1686 | 34..1324 | 6380 | 99.6 | Plus |
isopeptidase-T-3-RA | 1674 | CG11025-PA | 396..1674 | 46..1324 | 6320 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RB | 1778 | CG11025-RB | 105..1415 | 17..1327 | 6480 | 99.6 | Plus |
isopeptidase-T-3-RC | 2491 | CG11025-RC | 533..1826 | 34..1327 | 6395 | 99.6 | Plus |
isopeptidase-T-3-RA | 2479 | CG11025-RA | 533..1814 | 46..1327 | 6335 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19671359..19671850 | 44..535 | 2430 | 99.6 | Plus |
2R | 25286936 | 2R | 19671906..19672242 | 536..872 | 1685 | 100 | Plus |
2R | 25286936 | 2R | 19672294..19672597 | 872..1175 | 1475 | 99 | Plus |
2R | 25286936 | 2R | 19672660..19672812 | 1175..1327 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:07:57 has no hits.
BS12645.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:33 Download gff for
BS12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 1..1308 | 17..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:55 Download gff for
BS12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..1415 | 17..1327 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:50 Download gff for
BS12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..1411 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:33 Download gff for
BS12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..1415 | 17..1327 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:12 Download gff for
BS12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..1411 | 17..1323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:12 Download gff for
BS12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19672661..19672808 | 1176..1323 | 100 | | Plus |
2R | 19671267..19671295 | 17..45 | 100 | -> | Plus |
2R | 19671361..19671850 | 46..535 | 99 | -> | Plus |
2R | 19671906..19672241 | 536..871 | 100 | -> | Plus |
2R | 19672294..19672597 | 872..1175 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:50 Download gff for
BS12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15558772..15558800 | 17..45 | 100 | -> | Plus |
arm_2R | 15558866..15559355 | 46..535 | 99 | -> | Plus |
arm_2R | 15559411..15559746 | 536..871 | 100 | -> | Plus |
arm_2R | 15559799..15560102 | 872..1175 | 99 | -> | Plus |
arm_2R | 15560166..15560313 | 1176..1323 | 100 | | Plus |
BS12645.pep Sequence
Translation from 16 to 1323
> BS12645.pep
MQKLRSLFLRKSAHTNRPGSSTSGEADDASRPGESILVRVICPSSRVLIF
KTDVNKRLNELKSEVILELSDDPDSIQLFAPDVRHLNPRYRLYRAEYFGG
ELNEGDTLAQLKVRNNETFILSPRRNTLPQTVSRIREVPGPNEQLVESAT
RYVPVNCNQLPTIDINEIFQQSNIQYDVRKVLISLAQASAAVIGAGPYAP
RLIAMLKQRLINRRNQQADTLQCLVDMGFKRELAAFALKAHNGIYSTTME
WLIQNQNEENPQEPPGMNMQHSLSSISPSTIVTNNETIENTAALIEIVRI
YSHRDSPPSDEIVESLTEMGFEETAVLAALKKTGNNKASACEWLCDNRSG
SVIELREGLAPDSPILKVILEMPQVQMTLSNPKTFLAFLGILENEHAIRV
WRGDNDTTSVITHILQKYHEEKHVLGINQFYTNRW*
BS12645.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-PB | 435 | CG11025-PB | 1..435 | 1..435 | 2228 | 100 | Plus |
isopeptidase-T-3-PC | 561 | CG11025-PC | 128..561 | 2..435 | 2206 | 99.1 | Plus |
isopeptidase-T-3-PA | 557 | CG11025-PA | 133..557 | 11..435 | 2181 | 100 | Plus |