Clone BS12645 Report

Search the DGRC for BS12645

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:126
Well:45
Vector:pDNR-Dual
Associated Gene/Transcriptisopeptidase-T-3-RB
Protein status:BS12645.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12645.3prime Sequence

797 bp (706 high quality bases) assembled on 2006-10-13

> BS12645.3prime
ATGGTCTAGAAAGCTTTCACCAGCGGTTCGTATAGAACTGATTGATGCCA
AGCACATGCTTCTCCTCATGGTACTTTTGAAGGATATGTGTGATGACCGA
GGTTGTGTCGTTGTCGCCACGCCACACGCGTATCGCATGTTCGTTTTCCA
GGATGCCCAGAAATGCCAAAAAAGTCTTTGGATTGCTTAGGGTCATCTGG
ACTTGTGGCATTTCCAGGATCACCTTTAGGATGGGCGAATCGGGCGCCAA
GCCTTCACGCAGTTCAATAACGCTACCCGATCGATTGTCGCACAACCATT
CGCACGCGGACGCCTTGTTGTTGCCAGTTTTCTTCAGCGCCGCAAGCACT
GCCGTCTCCTCGAAGCCCATTTCTGTAAGCGATTCTACAATCTCATCGCT
GGGAGGGGAATCCCGGTGGCTGTAGATTCGTACAATCTCAATCAAGGCAG
CAGTGTTTTCAATGGTTTCATTATTGGTGACAATCGTGGAGGGTGAGATG
GAAGATAGACTGTGCTGCATATTCATGCCCGGCGGTTCCTGTGGATTTTC
CTCGTTTTGGTTCTGTATTAGCCACTCCATCGTGGTCGAGTAAATGCCAT
TGTGTGCTTTTAAGGCAAATGCGGCTAGCTCCCGCTTGAAGCCCATGTCC
ACGAGGCATTGCAGCGTATCCGCTTGCTGATTTCGGCGATTGATCAAACG
TTGCTTTAGCATAGCTATCAGGCGTGGAGCATAAGGGCCAGCTCCTATAA
CCGCCGCAAAAGCTTGAGCCAAAGAGATCAACACCTTTCGCACATCG

BS12645.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11025-PA 1674 isopeptidase-T-3-RA 894..1674 797..17 3805 99.4 Minus
CG11025-PB 1308 isopeptidase-T-3-RB 528..1308 797..17 3805 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-RC 2491 CG11025-RC 1043..1826 797..14 3860 99.5 Minus
isopeptidase-T-3-RB 1778 CG11025-RB 632..1415 797..14 3860 99.5 Minus
isopeptidase-T-3-RA 2479 CG11025-RA 1031..1814 797..14 3860 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19671914..19672242 797..469 1630 99.7 Minus
2R 25286936 2R 19672294..19672597 469..166 1475 99 Minus
2R 25286936 2R 19672660..19672812 166..14 765 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:10:00 has no hits.

BS12645.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:54 Download gff for BS12645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11025-PB 528..1308 17..797 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:08 Download gff for BS12645.3prime
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 1031..1814 14..797 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:28 Download gff for BS12645.3prime
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 1031..1814 14..797 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:28 Download gff for BS12645.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19671914..19672241 470..797 99 -> Minus
2R 19672294..19672597 166..469 99 -> Minus
2R 19672661..19672812 14..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:08 Download gff for BS12645.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15559419..15559746 470..797 99 -> Minus
arm_2R 15560166..15560317 14..165 100   Minus
arm_2R 15559799..15560102 166..469 99 -> Minus

BS12645.5prime Sequence

787 bp (778 high quality bases) assembled on 2006-10-13

> BS12645.5prime
GAAGTTATCAGTCGACATGCAAAAACTGCGCAGTTTGTTTCTCAGGAAAT
CAGCCCATACAAATCGCCCAGGTAGCTCTACTTCTGGCGAGGCAGACGAT
GCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGGTAATCTGCCCCAGCTC
TCGGGTTCTTATCTTCAAAACGGACGTTAATAAGCGCCTAAACGAGCTGA
AGAGTGAGGTGATTCTGGAACTGAGCGACGATCCCGACTCCATCCAGCTA
TTTGCCCCAGATGTGCGGCATCTTAATCCGCGATACCGTCTCTATCGGGC
GGAATACTTCGGCGGCGAGCTTAACGAGGGCGACACGCTGGCCCAGCTAA
AAGTTCGCAACAATGAGACTTTTATACTCTCTCCACGACGCAATACTCTG
CCGCAGACTGTTTCACGGATACGTGAGGTTCCTGGCCCAAATGAGCAGCT
GGTGGAGAGCGCCACCCGATACGTGCCCGTCAATTGCAACCAGCTGCCCA
CCATCGATATTAATGAAATCTTTCAGCAGTCGAATATCCAATACGATGTG
CGAAAGGTGTTGATCTCTTTGGCTCAAGCTTCTGCGGCGGTTATAGGAGC
TGGCCCTTATGCTCCACGCCTGATAGCTATGCTAAAGCAACGTTTGATCA
ATCGCCGAAATCAGCAAGCGGATACGCTGCAATGCCTCGTGGACATGGGC
TTCAAGCGGGAGCTAGCCGCATTTGCCTTAAAAGCACACAATGGCATTTA
CTCGACCACGATGGAGTGGCTAATACAGAACCAAAAC

BS12645.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11025-PB 1308 isopeptidase-T-3-RB 1..771 17..787 3805 99.7 Plus
CG11025-PA 1674 isopeptidase-T-3-RA 396..1137 46..787 3660 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-RB 1778 CG11025-RB 105..875 17..787 3825 99.7 Plus
isopeptidase-T-3-RC 2491 CG11025-RC 533..1286 34..787 3740 99.7 Plus
isopeptidase-T-3-RA 2479 CG11025-RA 533..1274 46..787 3680 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19671359..19671850 44..535 2430 99.6 Plus
2R 25286936 2R 19671906..19672157 536..787 1260 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:46:11 has no hits.

BS12645.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:55 Download gff for BS12645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11025-PB 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:37 Download gff for BS12645.5prime
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RB 105..875 17..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:03 Download gff for BS12645.5prime
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RB 105..875 17..787 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:03 Download gff for BS12645.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19671267..19671295 17..45 100 -> Plus
2R 19671361..19671850 46..535 99 -> Plus
2R 19671906..19672157 536..787 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:37 Download gff for BS12645.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15558772..15558800 17..45 100 -> Plus
arm_2R 15558866..15559355 46..535 99 -> Plus
arm_2R 15559411..15559662 536..787 100   Plus

BS12645.complete Sequence

1340 bp assembled on 2006-11-01

GenBank Submission: FJ637247

> BS12645.complete
GAAGTTATCAGTCGACATGCAAAAACTGCGCAGTTTGTTTCTCAGGAAAT
CAGCCCATACAAATCGCCCAGGTAGCTCTACTTCTGGCGAGGCAGACGAT
GCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGGTAATCTGCCCCAGCTC
TCGGGTTCTTATCTTCAAAACGGACGTTAATAAGCGCCTAAACGAGCTGA
AGAGTGAGGTGATTCTGGAACTGAGCGACGATCCCGACTCCATCCAGCTA
TTTGCCCCAGATGTGCGGCATCTTAATCCGCGATACCGTCTCTATCGGGC
GGAATACTTCGGCGGCGAGCTTAACGAGGGCGACACGCTGGCCCAGCTAA
AAGTTCGCAACAATGAGACTTTTATACTCTCTCCACGACGCAATACTCTG
CCGCAGACTGTTTCACGGATACGTGAGGTTCCTGGCCCAAATGAGCAGCT
GGTGGAGAGCGCCACCCGATACGTGCCCGTCAATTGCAACCAGCTGCCCA
CCATCGATATTAATGAAATCTTTCAGCAGTCGAATATCCAATACGATGTG
CGAAAGGTGTTGATCTCTTTGGCTCAAGCTTCTGCGGCGGTTATAGGAGC
TGGCCCTTATGCTCCACGCCTGATAGCTATGCTAAAGCAACGTTTGATCA
ATCGCCGAAATCAGCAAGCGGATACGCTGCAATGCCTCGTGGACATGGGC
TTCAAGCGGGAGCTAGCCGCATTTGCCTTAAAAGCACACAATGGCATTTA
CTCGACCACGATGGAGTGGCTAATACAGAACCAAAACGAGGAAAATCCAC
AGGAACCGCCGGGCATGAATATGCAGCACAGTCTATCTTCCATCTCACCC
TCCACGATTGTCACCAATAATGAAACCATTGAAAACACTGCTGCCTTGAT
TGAGATTGTACGAATCTACAGCCACCGGGATTCCCCTCCCAGCGATGAGA
TTGTAGAATCGCTTACAGAAATGGGCTTCGAGGAGACGGCAGTGCTTGCG
GCGCTGAAGAAAACTGGCAACAACAAGGCGTCCGCGTGCGAATGGTTGTG
CGACAATCGATCGGGTAGCGTTATTGAACTGCGTGAAGGCTTGGCGCCCG
ATTCGCCCATCCTAAAGGTGATCCTGGAAATGCCACAAGTCCAGATGACC
CTAAGCAATCCAAAGACTTTTTTGGCATTTCTGGGCATCCTGGAAAACGA
ACATGCGATACGCGTGTGGCGTGGCGACAACGACACAACCTCGGTCATCA
CACATATCCTTCAAAAGTACCATGAGGAGAAGCATGTGCTTGGCATCAAT
CAGTTCTATACGAACCGCTGGTGAAAGCTTTCTAGACCAT

BS12645.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-RB 1308 CG11025-PB 1..1308 17..1324 6465 99.6 Plus
isopeptidase-T-3-RC 1686 CG11025-PC 396..1686 34..1324 6380 99.6 Plus
isopeptidase-T-3-RA 1674 CG11025-PA 396..1674 46..1324 6320 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-RB 1778 CG11025-RB 105..1415 17..1327 6480 99.6 Plus
isopeptidase-T-3-RC 2491 CG11025-RC 533..1826 34..1327 6395 99.6 Plus
isopeptidase-T-3-RA 2479 CG11025-RA 533..1814 46..1327 6335 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19671359..19671850 44..535 2430 99.6 Plus
2R 25286936 2R 19671906..19672242 536..872 1685 100 Plus
2R 25286936 2R 19672294..19672597 872..1175 1475 99 Plus
2R 25286936 2R 19672660..19672812 1175..1327 765 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:07:57 has no hits.

BS12645.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:43:33 Download gff for BS12645.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RB 1..1308 17..1324 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:17:55 Download gff for BS12645.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RB 105..1415 17..1327 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:50 Download gff for BS12645.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RB 105..1411 17..1323 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:43:33 Download gff for BS12645.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RB 105..1415 17..1327 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:12 Download gff for BS12645.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RB 105..1411 17..1323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:12 Download gff for BS12645.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19672661..19672808 1176..1323 100   Plus
2R 19671267..19671295 17..45 100 -> Plus
2R 19671361..19671850 46..535 99 -> Plus
2R 19671906..19672241 536..871 100 -> Plus
2R 19672294..19672597 872..1175 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:50 Download gff for BS12645.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15558772..15558800 17..45 100 -> Plus
arm_2R 15558866..15559355 46..535 99 -> Plus
arm_2R 15559411..15559746 536..871 100 -> Plus
arm_2R 15559799..15560102 872..1175 99 -> Plus
arm_2R 15560166..15560313 1176..1323 100   Plus

BS12645.pep Sequence

Translation from 16 to 1323

> BS12645.pep
MQKLRSLFLRKSAHTNRPGSSTSGEADDASRPGESILVRVICPSSRVLIF
KTDVNKRLNELKSEVILELSDDPDSIQLFAPDVRHLNPRYRLYRAEYFGG
ELNEGDTLAQLKVRNNETFILSPRRNTLPQTVSRIREVPGPNEQLVESAT
RYVPVNCNQLPTIDINEIFQQSNIQYDVRKVLISLAQASAAVIGAGPYAP
RLIAMLKQRLINRRNQQADTLQCLVDMGFKRELAAFALKAHNGIYSTTME
WLIQNQNEENPQEPPGMNMQHSLSSISPSTIVTNNETIENTAALIEIVRI
YSHRDSPPSDEIVESLTEMGFEETAVLAALKKTGNNKASACEWLCDNRSG
SVIELREGLAPDSPILKVILEMPQVQMTLSNPKTFLAFLGILENEHAIRV
WRGDNDTTSVITHILQKYHEEKHVLGINQFYTNRW*

BS12645.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-PB 435 CG11025-PB 1..435 1..435 2228 100 Plus
isopeptidase-T-3-PC 561 CG11025-PC 128..561 2..435 2206 99.1 Plus
isopeptidase-T-3-PA 557 CG11025-PA 133..557 11..435 2181 100 Plus